>COL5_ARATH (Q9FHH8) Zinc finger protein CONSTANS-LIKE 5|
          Length = 355

 Score = 66.6 bits (161), Expect = 1e-11
 Identities = 38/97 (39%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
 Frame = +2

Query: 125 WGVXXXXXXXXXXSPAAVHCRTCXXXXXXXXXAYLCAGCDAG-HARAGHERVWVCEVCEL 301
           WG             AAV CR           A+LC  CD   H+   HERVWVCEVCE 
Sbjct: 15  WGAAARSCDACKSVTAAVFCRV--------DSAFLCIACDTRIHSFTRHERVWVCEVCEQ 66

Query: 302 XXXXXXXXXXXXXXXXXXXXXIHHANPLARRHERVPV 412
                                IH ANPLA RHERVPV
Sbjct: 67  APAAVTCKADAAALCVSCDADIHSANPLASRHERVPV 103

>COL4_ARATH (Q940T9) Zinc finger protein CONSTANS-LIKE 4|
          Length = 362

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 34/86 (39%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = +2

Query: 170 AAVHCRTCXXXXXXXXXAYLCAGCD-----AGHARAGHERVWVCEVCELXXXXXXXXXXX 334
           AA++CR           A+LC  CD     A    + H RVW+CEVCE            
Sbjct: 14  AALYCRP--------DAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADA 65

Query: 335 XXXXXXXXXXIHHANPLARRHERVPV 412
                     IH ANPLARRHERVPV
Sbjct: 66  AALCVTCDRDIHSANPLARRHERVPV 91

>COL3_ARATH (Q9SK53) Zinc finger protein CONSTANS-LIKE 3|
          Length = 294

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +2

Query: 221 AYLCAGCD-----AGHARAGHERVWVCEVCELXXXXXXXXXXXXXXXXXXXXXIHHANPL 385
           A+LC  CD     A    + HERVW+CEVCE                      IH ANPL
Sbjct: 25  AFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPL 84

Query: 386 ARRHERVPV 412
           +RRHERVP+
Sbjct: 85  SRRHERVPI 93

>COL1_ARATH (O50055) Zinc finger protein CONSTANS-LIKE 1|
          Length = 355

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 33/86 (38%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
 Frame = +2

Query: 182 CRTCXXXXXX----XXXAYLCAGCDAG-HAR----AGHERVWVCEVCELXXXXXXXXXXX 334
           C TC             AYLC+ CDA  HA     + HERV VC+ CE            
Sbjct: 12  CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADA 71

Query: 335 XXXXXXXXXXIHHANPLARRHERVPV 412
                     IH ANPLARRH+RVP+
Sbjct: 72  ASLCTTCDSEIHSANPLARRHQRVPI 97

>COL2_ARATH (Q96502) Zinc finger protein CONSTANS-LIKE 2|
          Length = 347

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 31/86 (36%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
 Frame = +2

Query: 182 CRTCXXXXXX----XXXAYLCAGCDA-----GHARAGHERVWVCEVCELXXXXXXXXXXX 334
           C TC             AYLC  CDA         + HERV VC+ CE            
Sbjct: 16  CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADA 75

Query: 335 XXXXXXXXXXIHHANPLARRHERVPV 412
                     IH ANPLARRH+RVP+
Sbjct: 76  ASLCTACDAEIHSANPLARRHQRVPI 101

>CONS_ARATH (Q39057) Zinc finger protein CONSTANS|
          Length = 373

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
 Frame = +2

Query: 182 CRTCXXXXXX----XXXAYLCAGCDA-----GHARAGHERVWVCEVCELXXXXXXXXXXX 334
           C TC             AYLC  CDA         + H+RV VCE CE            
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADD 79

Query: 335 XXXXXXXXXXIHHANPLARRHERVPV 412
                     +H ANPLARRH+RVP+
Sbjct: 80  ASLCTACDSEVHSANPLARRHQRVPI 105

>COL6_ARATH (Q8LG76) Zinc finger protein CONSTANS-LIKE 6|
          Length = 406

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 365 IHHANPLARRHERV 406
           +H ANPLARRHERV
Sbjct: 44  VHSANPLARRHERV 57

>COL16_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16|
          Length = 417

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 365 IHHANPLARRHERV 406
           +H ANPLARRHERV
Sbjct: 44  VHSANPLARRHERV 57

>VP40_BHV1C (P54817) Capsid protein P40 [Contains: Assemblin (Protease) (EC|
           3.4.21.97); Capsid assembly protein]
          Length = 621

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 264 PARACPASHPAHRYAPSPPPLRPSH 190
           P    PA  P H ++P PP   PSH
Sbjct: 463 PGEGAPAELPPHHHSPPPPHPPPSH 487

>NEB2_HUMAN (Q96SB3) Neurabin-2 (Neurabin-II) (Spinophilin) (Protein|
           phosphatase 1 regulatory subunit 9B)
          Length = 815

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 252 CPASH--PAHRYAPSPPPLRPSHVRQ 181
           CPA    P HR AP+ PP +P  VR+
Sbjct: 270 CPAGQQPPQHRVAPARPPPKPREVRK 295

>CYAA_NEUCR (Q01631) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 2300

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = -2

Query: 258 RACPASHPAHRYAPSPP-----PLRPSHVRQCTAAG 166
           RA  +++PA  Y   P      P+RP +VRQ TA G
Sbjct: 593 RAAESTYPASVYVSDPSEQREVPVRPGYVRQTTAPG 628

>FYB_MOUSE (O35601) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)|
           (p120/p130) (SLP-76-associated phosphoprotein)
           (SLAP-130)
          Length = 819

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = -2

Query: 282 THTLSCPARACPASHPAHRYAPSPPP 205
           TH  S P    PASHPAH   PS PP
Sbjct: 386 THPASQPP--LPASHPAHPPVPSLPP 409

>RNC_HUMAN (Q9NRR4) Ribonuclease III (EC 3.1.26.3) (RNase III) (Drosha) (p241)|
          Length = 1374

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 264 PARACPASHPAHRYAPSPPPLRPSHVR 184
           P R CP     H   PS P  RP ++R
Sbjct: 14  PGRGCPRGRGGHGARPSAPSFRPQNLR 40

>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -2

Query: 291 TSQTHTLSCPARACPASHPAHRYAPSPPPLR 199
           TS   T SCP  A     P  R  PSPP LR
Sbjct: 114 TSARSTSSCPRAAPTCPCPLSRRVPSPPYLR 144

>UCP8_SCHPO (O94685) UBA domain-containing protein 8|
          Length = 884

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 264 PARACPASHPAHRYAPSPPPLRPS 193
           PA   PA  PA ++ P PPP+R S
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSS 752

>STHY_ARATH (Q9SYM2) Putative salt tolerance-like protein At1g78600|
          Length = 299

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +2

Query: 284 CEVCELXXXXXXXXXXXXXXXXXXXXXIHHANPLARRHERVPV 412
           C VCE                      IH AN LA +H+RVP+
Sbjct: 5   CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL 47

>K1543_MOUSE (Q80VC9) Protein KIAA1543|
          Length = 1252

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 264 PARACPASHPAHRYAPSPPPLRPSHVR 184
           PAR  PA+  +    PSP P  P H R
Sbjct: 757 PARRAPAARRSPGPGPSPTPRSPKHAR 783

>DNB2_ADE04 (P06500) Early E2A DNA-binding protein|
          Length = 512

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 246 ASHPAHRYAPSPPPL 202
           ASHP  R +PSPPPL
Sbjct: 24  ASHPPGRESPSPPPL 38

>MUTL_TREPA (O83325) DNA mismatch repair protein mutL|
          Length = 620

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 249 PASHPAHRYAPSPPPLRPSHVRQCT 175
           P  H AH   PSPP +   H R CT
Sbjct: 399 PVQH-AHLLPPSPPHISCEHARDCT 422

>GPI11_MAGGR (P0C148) Glycosylphosphatidylinositol anchor biosynthesis protein|
           11
          Length = 256

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -2

Query: 276 TLSCPARACPASHPAHRYAPSPPPLRPSHVR 184
           T S PA+A   S P     PSPPP   SH R
Sbjct: 3   TPSTPAKAMGKSLPNTVKDPSPPPKAGSHTR 33


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,584,235
Number of Sequences: 219361
Number of extensions: 387929
Number of successful extensions: 1999
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1976
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)