>PAL1_ORYSA (P14717) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 701

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +2

Query: 68  MAGNGAIVEKDPLNWGAAAAELTGS 142
           MAGNG I ++DPLNWGAAAAE+ GS
Sbjct: 1   MAGNGPINKEDPLNWGAAAAEMAGS 25

>PAL1_DAUCA (O23865) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5)|
          Length = 708

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +2

Query: 74  GNGAIVEKDPLNWGAAAAELTGS 142
           GNG  ++KDPLNWG AA  LTGS
Sbjct: 11  GNGLCMQKDPLNWGMAAEALTGS 33

>PALY_BROFI (Q42609) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 703

 Score = 34.3 bits (77), Expect = 0.097
 Identities = 16/23 (69%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = +2

Query: 77  NGAIVE-KDPLNWGAAAAELTGS 142
           NG  ++ +DPLNWGAAAAEL GS
Sbjct: 7   NGLCLQGRDPLNWGAAAAELQGS 29

>PALY_HELAN (O04058) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 667

 Score = 32.0 bits (71), Expect = 0.48
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +2

Query: 71  AGNGAIVEKDPLNWGAAAAELTGS 142
           + NG  + KDPLNWG AA  LTGS
Sbjct: 10  SANGFCI-KDPLNWGVAAEALTGS 32

>PAL3_PETCR (P45729) Phenylalanine ammonia-lyase 3 (EC 4.3.1.5)|
          Length = 718

 Score = 31.6 bits (70), Expect = 0.63
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +2

Query: 74  GNG---AIVEKDPLNWGAAAAELTGS 142
           GNG    + ++DPLNWG AA  LTGS
Sbjct: 14  GNGLDLCMKKEDPLNWGVAAEALTGS 39

>PAL1_ARATH (P35510) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5)|
          Length = 725

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 77  NGAIVEKDPLNWGAAAAELTGS 142
           N  I  +DPLNWGAAA ++ GS
Sbjct: 27  NMVINAEDPLNWGAAAEQMKGS 48

>TRI48_HUMAN (Q8IWZ4) Tripartite motif protein 48 (RING finger protein 101)|
          Length = 375

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 6   LLRLPCSSSQSAGHHHHPPRKWQATE 83
           LL L CSSSQ   +H H P +W A E
Sbjct: 110 LLCLLCSSSQEHRYHRHCPAEWAAEE 135

>PAL1_PRUAV (O64963) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5)|
          Length = 717

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 89  VEKDPLNWGAAAAELTGS 142
           ++KDPLNWG AA  L GS
Sbjct: 23  IKKDPLNWGVAAETLKGS 40

>TRI49_HUMAN (Q9NS80) Tripartite motif protein 49 (RING finger protein 18)|
           (Testis-specific ring-finger protein)
          Length = 452

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 6   LLRLPCSSSQSAGHHHHPPRKWQATE 83
           LL L CSSSQ   +H H P +W A E
Sbjct: 110 LLCLLCSSSQEHRYHRHRPIEWAAEE 135

>PALY_STYHU (P45732) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 715

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +2

Query: 71  AGNGAIVEKDPLNWGAAAAELTGS 142
           A NG     DPLNW AAA  L GS
Sbjct: 15  ANNGQQPRHDPLNWAAAAEALKGS 38

>PALY_WHEAT (Q43210) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 700

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 98  DPLNWGAAAAELTGS 142
           DPLNWG AA EL+GS
Sbjct: 12  DPLNWGKAAEELSGS 26

>PALY_MEDSA (P27990) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 725

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 65  KMAGNGAIVEKDPLNWGAAAAELTGS 142
           K   N  + E DPLNWG AA  + GS
Sbjct: 23  KNNNNMKVNEADPLNWGVAAEAMKGS 48

>MB21_ARATH (O80998) Myrosinase-binding protein-like At2g25980|
          Length = 449

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 44  PPPPPTEKMAGNG 82
           PPPPPTEK+ G+G
Sbjct: 298 PPPPPTEKLQGSG 310

>PAL2_ORYSA (P53443) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 710

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 98  DPLNWGAAAAELTGS 142
           DPLNWG A  E+TGS
Sbjct: 23  DPLNWGKATEEMTGS 37

>PAL2_CICAR (Q9SMK9) Phenylalanine ammonia-lyase 2 (EC 4.3.1.5)|
          Length = 718

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 74  GNGAIVEKDPLNWGAAAAELTGS 142
           GNG +   D LNWG AA  + GS
Sbjct: 19  GNGNLSNNDSLNWGMAADSMRGS 41

>PAL2_LITER (O49836) Phenylalanine ammonia-lyase 2 (EC 4.3.1.5) (PAL-2)|
          Length = 705

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 74  GNGAI--VEKDPLNWGAAAAELTGS 142
           GNG +    KDPLNWG AA  + GS
Sbjct: 4   GNGKMEFCMKDPLNWGMAAESMKGS 28

>PALY_TRISU (P45734) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 725

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 59  TEKMAGNGAIVEKDPLNWGAAAAELTGS 142
           T   A N  +   DPLNWG AA  + GS
Sbjct: 22  THANANNMKVNAADPLNWGVAAEAMKGS 49

>PALY_CAMSI (P45726) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 714

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 74  GNGAIVEKDPLNWGAAAAELTGS 142
           G+     KDPLNWG AA  + GS
Sbjct: 15  GSPGFCLKDPLNWGVAAEAMKGS 37

>PALY_DIGLA (O23924) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 713

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 86  IVEKDPLNWGAAAAELTGS 142
           + + DPLNW AAA EL GS
Sbjct: 17  VKQNDPLNWVAAAEELKGS 35

>PAL2_PEA (Q04593) Phenylalanine ammonia-lyase 2 (EC 4.3.1.5)|
          Length = 724

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 59  TEKMAGNGAIVEKDPLNWGAAAAELTGS 142
           T     N  + + DPLNWG AA  + GS
Sbjct: 21  TNAKNNNIKVSDSDPLNWGVAAEAMKGS 48

>NAC76_ORYSA (Q5Z6B6) NAC domain-containing protein 76 (ONAC076)|
          Length = 276

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 5   SSSTPLLLFAVCRPPPPPTEKMAGNGAIVEKDPLNW-GAAAAEL 133
           S   P L+ A   PPPPP+    G  + +++ PL + G  AA+L
Sbjct: 228 SMQLPQLMSADQPPPPPPSLLPGGTASSLQRLPLQYLGCEAADL 271

>OSB10_HUMAN (Q9BXB5) Oxysterol-binding protein-related protein 10 (OSBP-related|
           protein 10) (ORP-10)
          Length = 764

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -1

Query: 135 VSSAAAAPQLSGSFSTMAPLPAIFSVGGGGGRQTAKRSRGV 13
           VSS +AA  L G  S  +P     S  GGGGR+      GV
Sbjct: 40  VSSRSAAAGLGGGGSRSSPGSVAASPSGGGGRRREPALEGV 80

>CRCB1_STRCO (Q9FC39) Protein crcB homolog 1|
          Length = 154

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 138 PVSSAAAAPQLSGSFSTMAPLPAIFSVGGGGG 43
           P    AAAP  SG + T AP+ A+ ++GGG G
Sbjct: 9   PGGIRAAAPSRSG-WRTQAPVVAVVALGGGTG 39

>VE2_HPV25 (P36787) Regulatory protein E2|
          Length = 502

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 40  PATTTTHRENGRQRSHRREGPAQ--LGRGGGRAHR 138
           P+TT++      QRS  R G ++   GRGG R HR
Sbjct: 333 PSTTSSATSQRSQRSRSRAGSSRGGRGRGGRRRHR 367

>RL4_MYCPA (P61066) 50S ribosomal protein L4|
          Length = 217

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 10  FDSPAPLRSLPATTTTHRENGRQRSHRREGPAQLGRGGGRAHRQ 141
           FD+PA +  +    T  R   RQ +H  +    +  GG + +RQ
Sbjct: 25  FDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGRKPYRQ 68

>RL4_MYCLE (O32982) 50S ribosomal protein L4|
          Length = 230

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 10  FDSPAPLRSLPATTTTHRENGRQRSHRREGPAQLGRGGGRAHRQ 141
           FD+PA +  +    T  R   RQ +H  +    +  GG + +RQ
Sbjct: 34  FDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGRKPYRQ 77

>PAL1_SOYBN (P27991) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5)|
          Length = 713

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 98  DPLNWGAAAAELTGS 142
           DPLNWGAAA  + GS
Sbjct: 22  DPLNWGAAAEAMKGS 36

>PAL2_POPKI (Q43052) Phenylalanine ammonia-lyase G2B (EC 4.3.1.5)|
          Length = 710

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 74  GNGA--IVEKDPLNWGAAAAELTGS 142
           GNG+      DPLNWG AA  L GS
Sbjct: 10  GNGSPGFNTNDPLNWGMAAESLKGS 34

>BTBD1_HUMAN (Q9H0C5) BTB/POZ domain-containing protein 1 (Hepatitis C virus|
           NS5A-transactivated protein 8) (NS5ATP8)
          Length = 482

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 44  PPPPPTEKMAGNGAIVEKDPL-NWGAAAAEL 133
           PPPPP+    G    ++++PL NW A  A L
Sbjct: 25  PPPPPSPSSLGPLLPLQREPLYNWQATKASL 55

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 132 SSAAAAPQLSGSFSTMAPLPAIFSVGGGGGRQTAKRSRGVEEDP 1
           + AA    + G     AP P +   GGGGG+Q   R  GV   P
Sbjct: 860 AEAAVGRGVLGHGPERAPEPVVLGGGGGGGQQ---RGSGVRSGP 900

>PAPD5_HUMAN (Q8NDF8) PAP associated domain-containing protein 5 (EC 2.7.7.-)|
           (Topoisomerase-related function protein 4-2) (TRF4-2)
          Length = 572

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 16  SPAPLRSLPATTTTHRENGRQRSHRREGPAQLGR--GGGRA 132
           SP P  ++PA       +G     +R+  A  GR  GGGRA
Sbjct: 56  SPHPSAAVPAADPADSASGSSNKRKRDNKASGGRAAGGGRA 96

>PAL1_RUBID (Q9M568) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (RiPAL1)|
          Length = 710

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
 Frame = +2

Query: 74  GNGAIVE----KDPLNWGAAAAELTGS 142
           GNGA+       DPLNW  AA  L GS
Sbjct: 7   GNGAVESFCEGHDPLNWNMAAESLKGS 33

>PACC_TRIRU (Q9C1A4) pH-response transcription factor pacC/RIM101|
          Length = 758

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 141 LPVSSAAAAPQLSGSFSTMAPLPAIFSVGGG-GGRQTA 31
           LP++ A A P+         P+PA+  VGGG GG Q+A
Sbjct: 296 LPLTHAGAVPEYQ-------PMPAMVGVGGGHGGYQSA 326

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 132 SSAAAAPQLSGSFSTMAPLPAIFSVGGGGGRQTAKRSRG 16
           ++ AAAP   G  S  +P     S  GGGG  +A   RG
Sbjct: 217 AAVAAAPARRGPASPASPAAGPVSAPGGGGAPSAGGDRG 255


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,307,878
Number of Sequences: 219361
Number of extensions: 399354
Number of successful extensions: 3062
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 2779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3036
length of database: 80,573,946
effective HSP length: 23
effective length of database: 75,528,643
effective search space used: 1812687432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)