ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast70e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC135503.8| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
2emb|CR732431.2|CNS0GS38 Tetraodon nigroviridis full-length cDNA 40 5.7
3emb|CR731383.2|CNS0GRA4 Tetraodon nigroviridis full-length cDNA 40 5.7
4emb|CR730931.2|CNS0GQXK Tetraodon nigroviridis full-length cDNA 40 5.7
5gb|AY364468.1| Triticum monococcum cytosolic glutathione peroxid... 40 5.7
6emb|AJ238745.1|HVU238745 Hordeum vulgare mRNA for glutathione pe... 40 5.7
7emb|AJ010455.1|TAE010455 Triticum aestivum glutathione peroxidase 40 5.7
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7

>gb|AC135503.8| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0117L20 map S2137, complete sequence
          Length = 125303

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   cgatggccgccgcgtcctcc 341
             ||||||||||||||||||||
Sbjct: 86798 cgatggccgccgcgtcctcc 86817



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>emb|CR732431.2|CNS0GS38 Tetraodon nigroviridis full-length cDNA
          Length = 1696

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 238 tcggtgtgtggcggcgctcggctc 261
           |||||||||| |||||||||||||
Sbjct: 128 tcggtgtgtgtcggcgctcggctc 105



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>emb|CR731383.2|CNS0GRA4 Tetraodon nigroviridis full-length cDNA
          Length = 1746

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 238 tcggtgtgtggcggcgctcggctc 261
           |||||||||| |||||||||||||
Sbjct: 159 tcggtgtgtgtcggcgctcggctc 136



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>emb|CR730931.2|CNS0GQXK Tetraodon nigroviridis full-length cDNA
          Length = 1726

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 238 tcggtgtgtggcggcgctcggctc 261
           |||||||||| |||||||||||||
Sbjct: 148 tcggtgtgtgtcggcgctcggctc 125



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>gb|AY364468.1| Triticum monococcum cytosolic glutathione peroxidase (gpc1) mRNA,
           complete cds
          Length = 901

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 324 atggccgccgcgtcctccgc 343
           ||||||||||||||||||||
Sbjct: 123 atggccgccgcgtcctccgc 142



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>emb|AJ238745.1|HVU238745 Hordeum vulgare mRNA for glutathione peroxidase-like protein
           GPX54Hv
          Length = 915

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 324 atggccgccgcgtcctccgc 343
           ||||||||||||||||||||
Sbjct: 133 atggccgccgcgtcctccgc 152



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>emb|AJ010455.1|TAE010455 Triticum aestivum glutathione peroxidase
          Length = 327

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 324 atggccgccgcgtcctccgc 343
           ||||||||||||||||||||
Sbjct: 112 atggccgccgcgtcctccgc 131



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 322     cgatggccgccgcgtcctcc 341
               ||||||||||||||||||||
Sbjct: 8183443 cgatggccgccgcgtcctcc 8183462



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 322     cgatggccgccgcgtcctcc 341
               ||||||||||||||||||||
Sbjct: 8254206 cgatggccgccgcgtcctcc 8254225


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,450,665
Number of Sequences: 3902068
Number of extensions: 1450665
Number of successful extensions: 23967
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23921
Number of HSP's gapped (non-prelim): 46
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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