>LEU11_METJA (Q57926) 2-isopropylmalate synthase 1 (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase 1) (Alpha-IPM synthetase
           1)
          Length = 398

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 260 GLDVAEISELAALRPIQTAVS--GAAVPGEDDGTAVADDTGCVTPKA 394
           GL VA  +E A   PI+  +    AA     D   +AD TGC TP++
Sbjct: 149 GLFVAFSAEDATRTPIEDLIKVHKAAEEAGADRVHIADTTGCATPQS 195

>CDX4_HUMAN (O14627) Homeobox protein CDX-4 (Caudal-type homeobox protein 4)|
          Length = 284

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 281 SELAALRPIQTAVSGAAVPGEDDGTAVADDTGCVTPKASGP 403
           ++ + L P+    SG+++PG+  G+ V  D G    KAS P
Sbjct: 111 TDYSNLGPVGGGTSGSSLPGQAGGSLVPTDAGAA--KASSP 149

>ELOA1_HUMAN (Q14241) Transcription elongation factor B polypeptide 3 (RNA|
           polymerase II transcription factor SIII subunit A1)
           (SIII p110) (Elongin A) (EloA) (Elongin 110 kDa subunit)
          Length = 772

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -2

Query: 340 PGHCGAAHGRL---DRPERRQFGDFRDIEAHRSRCARADPTAALDPLSGD 200
           P H    H +L   +RP +   G  R  E  R RC R  PT + DP S D
Sbjct: 126 PDHRQKKHRKLSELERPHKVSHGHERRDE--RKRCHRMSPTYSSDPESSD 173


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,833,988
Number of Sequences: 219361
Number of extensions: 572905
Number of successful extensions: 1469
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)