ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast70d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018185.1| Zea mays clone EL01N0558E02.c mRNA sequence 117 2e-23
2ref|XM_479671.1| Oryza sativa (japonica cultivar-group), mRNA 76 8e-11
3ref|XM_506619.1| PREDICTED Oryza sativa (japonica cultivar-group... 76 8e-11
4dbj|AK067883.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 8e-11
5dbj|AK060348.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 8e-11
6ref|XM_536452.2| PREDICTED: Canis familiaris similar to U7 snRNA... 48 0.018
7dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
8dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
9gb|AY105771.1| Zea mays PCO074166 mRNA sequence 44 0.28
10gb|AF077372.1|AF077372 Zea mays cytochrome b5 reductase (NFR) mR... 44 0.28
11gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 42 1.1
12emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome... 42 1.1
13emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome... 42 1.1
14emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.1
15emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.1
16emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.1
17gb|AE005889.1| Caulobacter crescentus CB15 section 215 of 359 of... 42 1.1
18dbj|AK135715.1| Mus musculus in vitro fertilized eggs cDNA, RIKE... 42 1.1
19dbj|AK165145.1| Mus musculus 2 days pregnant adult female ovary ... 42 1.1
20emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.1
21gb|AC140363.3| Mus musculus BAC clone RP23-212M11 from 9, comple... 42 1.1
22gb|AF025406.1|AF025406 Mycobacterium tuberculosis PGRS-like seco... 42 1.1
23gb|AC102396.28| Mus musculus chromosome 3, clone RP24-169F23, co... 40 4.4
24gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 4.4
25gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 4.4
26gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 4.4
27gb|AY703589.1| Pseudomyrmex cubaensis 28S ribosomal RNA gene, pa... 40 4.4
28gb|BC035071.2| Homo sapiens gamma-aminobutyric acid (GABA) B rec... 40 4.4
29emb|AL353782.23| Human DNA sequence from clone RP11-207C11 on ch... 40 4.4
30emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 4.4
31emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome... 40 4.4
32emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome... 40 4.4
33emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome... 40 4.4
34emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome... 40 4.4
35emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.4
36emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 40 4.4
37emb|BX640421.1| Bordetella pertussis strain Tohama I, complete g... 40 4.4
38emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 4.4
39emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 4.4
40emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 4.4
41emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4,... 40 4.4
42emb|AL449123.1|LMFLUNK03 Leishmania major Friedlin cosmid L8530A... 40 4.4
43gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.4
44ref|NM_005458.5| Homo sapiens gamma-aminobutyric acid (GABA) B r... 40 4.4
45dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
46dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
47dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
48gb|AY826880.1| Heterocapsa triquetra clone HTNIFH1 chloroplast p... 40 4.4
49dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.4
50gb|AF056085.1|AF056085 Homo sapiens GABA-B receptor mRNA, comple... 40 4.4
51dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
52dbj|AP005565.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
53dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
54emb|AJ327397.1|HSA327397 Homo sapiens genomic sequence surroundi... 40 4.4 
>gb|BT018185.1| Zea mays clone EL01N0558E02.c mRNA sequence
          Length = 1219

 Score =  117 bits (59), Expect = 2e-23
 Identities = 113/131 (86%)
 Strand = Plus / Plus

                                                                       
Query: 201 ggctgcggctcggggctgcactgcgccgcctgcggcgacggcggggccggcgtctgcgcg 260
           ||||||||||| || |||||||||  | ||||||||| |||||||| | || ||||| ||
Sbjct: 8   ggctgcggctccggcctgcactgctgcccctgcggcgccggcgggggcagcatctgcacg 67

                                                                       
Query: 261 cgcgccacccccgtcgaccccctcacgcacggcaccggcctccccttcaacaactactcc 320
           ||||||| |||||| |||||   ||| |||||||| ||||||||||||||||||||||| 
Sbjct: 68  cgcgccagccccgtggacccggccacccacggcacgggcctccccttcaacaactactcg 127

                      
Query: 321 tggctcaccac 331
           |||||||||||
Sbjct: 128 tggctcaccac 138
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>ref|XM_479671.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1559

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 106/129 (82%), Gaps = 6/129 (4%)
 Strand = Plus / Plus

                                                                       
Query: 203 ctgcggctcggggctgcactgcgccgcctgcggcgacggcggggccggcgtc------tg 256
           ||||||| ||||||||||||||  || |||||||| |||||| | ||||| |      ||
Sbjct: 104 ctgcggcgcggggctgcactgcagcgactgcggcggcggcggcggcggcgacaagacgtg 163

                                                                       
Query: 257 cgcgcgcgccacccccgtcgaccccctcacgcacggcaccggcctccccttcaacaacta 316
           | |||||||||  ||| ||||||| |||||||||||||| |  |||||||||||||||||
Sbjct: 164 cacgcgcgccaagcccatcgacccgctcacgcacggcacggatctccccttcaacaacta 223

                    
Query: 317 ctcctggct 325
           ||| |||||
Sbjct: 224 ctcatggct 232
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>ref|XM_506619.1| PREDICTED Oryza sativa (japonica cultivar-group), P0015C07.31 mRNA
          Length = 1660

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 106/129 (82%), Gaps = 6/129 (4%)
 Strand = Plus / Plus

                                                                       
Query: 203 ctgcggctcggggctgcactgcgccgcctgcggcgacggcggggccggcgtc------tg 256
           ||||||| ||||||||||||||  || |||||||| |||||| | ||||| |      ||
Sbjct: 187 ctgcggcgcggggctgcactgcagcgactgcggcggcggcggcggcggcgacaagacgtg 246

                                                                       
Query: 257 cgcgcgcgccacccccgtcgaccccctcacgcacggcaccggcctccccttcaacaacta 316
           | |||||||||  ||| ||||||| |||||||||||||| |  |||||||||||||||||
Sbjct: 247 cacgcgcgccaagcccatcgacccgctcacgcacggcacggatctccccttcaacaacta 306

                    
Query: 317 ctcctggct 325
           ||| |||||
Sbjct: 307 ctcatggct 315
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>dbj|AK067883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124M22, full
           insert sequence
          Length = 1659

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 106/129 (82%), Gaps = 6/129 (4%)
 Strand = Plus / Plus

                                                                       
Query: 203 ctgcggctcggggctgcactgcgccgcctgcggcgacggcggggccggcgtc------tg 256
           ||||||| ||||||||||||||  || |||||||| |||||| | ||||| |      ||
Sbjct: 186 ctgcggcgcggggctgcactgcagcgactgcggcggcggcggcggcggcgacaagacgtg 245

                                                                       
Query: 257 cgcgcgcgccacccccgtcgaccccctcacgcacggcaccggcctccccttcaacaacta 316
           | |||||||||  ||| ||||||| |||||||||||||| |  |||||||||||||||||
Sbjct: 246 cacgcgcgccaagcccatcgacccgctcacgcacggcacggatctccccttcaacaacta 305

                    
Query: 317 ctcctggct 325
           ||| |||||
Sbjct: 306 ctcatggct 314
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>dbj|AK060348.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-F04, full
           insert sequence
          Length = 1559

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 106/129 (82%), Gaps = 6/129 (4%)
 Strand = Plus / Plus

                                                                       
Query: 203 ctgcggctcggggctgcactgcgccgcctgcggcgacggcggggccggcgtc------tg 256
           ||||||| ||||||||||||||  || |||||||| |||||| | ||||| |      ||
Sbjct: 104 ctgcggcgcggggctgcactgcagcgactgcggcggcggcggcggcggcgacaagacgtg 163

                                                                       
Query: 257 cgcgcgcgccacccccgtcgaccccctcacgcacggcaccggcctccccttcaacaacta 316
           | |||||||||  ||| ||||||| |||||||||||||| |  |||||||||||||||||
Sbjct: 164 cacgcgcgccaagcccatcgacccgctcacgcacggcacggatctccccttcaacaacta 223

                    
Query: 317 ctcctggct 325
           ||| |||||
Sbjct: 224 ctcatggct 232
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>ref|XM_536452.2| PREDICTED: Canis familiaris similar to U7 snRNA-associated Sm-like
           protein Lsm11 (LOC479314), mRNA
          Length = 1377

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 205 gcggctcggggctgcactgcgccg 228
           ||||||||||||||||||||||||
Sbjct: 118 gcggctcggggctgcactgcgccg 95
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                        
Query: 203    ctgcggctcggggctgcactgcgccgcctgcggcgacggcgg 244
              ||||||| ||||||||||||||  || |||||||| ||||||
Sbjct: 193784 ctgcggcgcggggctgcactgcagcgactgcggcggcggcgg 193743



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 300    ctccccttcaacaactactcctggct 325
              |||||||||||||||||||| |||||
Sbjct: 193593 ctccccttcaacaactactcatggct 193568
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>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0015C07
          Length = 149079

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                        
Query: 203    ctgcggctcggggctgcactgcgccgcctgcggcgacggcgg 244
              ||||||| ||||||||||||||  || |||||||| ||||||
Sbjct: 109119 ctgcggcgcggggctgcactgcagcgactgcggcggcggcgg 109078



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 300    ctccccttcaacaactactcctggct 325
              |||||||||||||||||||| |||||
Sbjct: 108928 ctccccttcaacaactactcatggct 108903
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>gb|AY105771.1| Zea mays PCO074166 mRNA sequence
          Length = 1305

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 223 gcgccgcctgcggcgacggcgg 244
           ||||||||||||||||||||||
Sbjct: 206 gcgccgcctgcggcgacggcgg 185
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>gb|AF077372.1|AF077372 Zea mays cytochrome b5 reductase (NFR) mRNA, complete cds
          Length = 1147

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 223 gcgccgcctgcggcgacggcgg 244
           ||||||||||||||||||||||
Sbjct: 120 gcgccgcctgcggcgacggcgg 99
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 232     gcggcgacggcggggccggcg 252
               |||||||||||||||||||||
Sbjct: 3935438 gcggcgacggcggggccggcg 3935458



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 232     gcggcgacggcggggccggcg 252
               |||||||||||||||||||||
Sbjct: 3929153 gcggcgacggcggggccggcg 3929173



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 232     gcggcgacggcggggccggcg 252
               |||||||||||||||||||||
Sbjct: 3928556 gcggcgacggcggggccggcg 3928576



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 232     gcggcgacggcggggccggcg 252
               |||||||||||||||||||||
Sbjct: 1384718 gcggcgacggcggggccggcg 1384698



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 233     cggcgacggcggggccggcg 252
               ||||||||||||||||||||
Sbjct: 3793226 cggcgacggcggggccggcg 3793245



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 233     cggcgacggcggggccggcg 252
               ||||||||||||||||||||
Sbjct: 2422790 cggcgacggcggggccggcg 2422771



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cggcgacggcggggccggcg 252
              ||||||||||||||||||||
Sbjct: 839545 cggcgacggcggggccggcg 839564



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cggcgacggcggggccggcg 252
              ||||||||||||||||||||
Sbjct: 839380 cggcgacggcggggccggcg 839399



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cggcgacggcggggccggcg 252
              ||||||||||||||||||||
Sbjct: 150279 cggcgacggcggggccggcg 150298
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>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13
          Length = 349606

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 232    gcggcgacggcggggccggcg 252
              |||||||||||||||||||||
Sbjct: 118690 gcggcgacggcggggccggcg 118710



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 232    gcggcgacggcggggccggcg 252
              |||||||||||||||||||||
Sbjct: 118075 gcggcgacggcggggccggcg 118095
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>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13
          Length = 348264

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 232  gcggcgacggcggggccggcg 252
            |||||||||||||||||||||
Sbjct: 2187 gcggcgacggcggggccggcg 2167
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>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14
          Length = 316050

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 232    gcggcgacggcggggccggcg 252
              |||||||||||||||||||||
Sbjct: 129172 gcggcgacggcggggccggcg 129192



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 233  cggcgacggcggggccggcg 252
            ||||||||||||||||||||
Sbjct: 3619 cggcgacggcggggccggcg 3638
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>emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             6/14
          Length = 300050

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 232   gcggcgacggcggggccggcg 252
             |||||||||||||||||||||
Sbjct: 18847 gcggcgacggcggggccggcg 18827
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>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             5/14
          Length = 299450

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 232   gcggcgacggcggggccggcg 252
             |||||||||||||||||||||
Sbjct: 71874 gcggcgacggcggggccggcg 71854
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>gb|AE005889.1| Caulobacter crescentus CB15 section 215 of 359 of the complete genome
          Length = 10190

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 193  ccggcgcgggctgcggctcgg 213
            |||||||||||||||||||||
Sbjct: 5676 ccggcgcgggctgcggctcgg 5696
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>dbj|AK135715.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
          enriched library, clone:7420405M03
          product:unclassifiable, full insert sequence
          Length = 2113

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 44 acgctcccccgtgcccgttcccgttcccg 72
          |||||||||||||||||| ||||| ||||
Sbjct: 38 acgctcccccgtgcccgtgcccgtgcccg 66
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>dbj|AK165145.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
          full-length enriched library, clone:E330037N21
          product:hypothetical protein, full insert sequence
          Length = 1401

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 44 acgctcccccgtgcccgttcccgttcccg 72
          |||||||||||||||||| ||||| ||||
Sbjct: 37 acgctcccccgtgcccgtgcccgtgcccg 65
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 198     gcgggctgcggctcggggctg 218
               |||||||||||||||||||||
Sbjct: 2792171 gcgggctgcggctcggggctg 2792191



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 246     gccggcgtctgcgcgcgcgccacc 269
               ||||||| ||||||||||||||||
Sbjct: 1882370 gccggcgcctgcgcgcgcgccacc 1882347
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>gb|AC140363.3| Mus musculus BAC clone RP23-212M11 from 9, complete sequence
          Length = 217832

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 44    acgctcccccgtgcccgttcccgttcccg 72
             |||||||||||||||||| ||||| ||||
Sbjct: 93828 acgctcccccgtgcccgtgcccgtgcccg 93800
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>gb|AF025406.1|AF025406 Mycobacterium tuberculosis PGRS-like secondary fingerprinting probe
           MTB485(1), region 4
          Length = 216

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 232 gcggcgacggcggggccggcg 252
           |||||||||||||||||||||
Sbjct: 215 gcggcgacggcggggccggcg 195
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>gb|AC102396.28| Mus musculus chromosome 3, clone RP24-169F23, complete sequence
          Length = 137155

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   cttcaacaactactcctggc 324
             ||||||||||||||||||||
Sbjct: 85041 cttcaacaactactcctggc 85022
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    cggcgcgggctgcggctcgg 213
              ||||||||||||||||||||
Sbjct: 946613 cggcgcgggctgcggctcgg 946594
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    ggcgcgggctgcggctcggg 214
              ||||||||||||||||||||
Sbjct: 716121 ggcgcgggctgcggctcggg 716102
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 189     tccgccggcgcgggctgcgg 208
               ||||||||||||||||||||
Sbjct: 3304685 tccgccggcgcgggctgcgg 3304704
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>gb|AY703589.1| Pseudomyrmex cubaensis 28S ribosomal RNA gene, partial sequence
          Length = 1886

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 241  gcggggccggcgtctgcgcgcgcg 264
            ||||||||||||| ||||||||||
Sbjct: 1043 gcggggccggcgtgtgcgcgcgcg 1020
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>gb|BC035071.2| Homo sapiens gamma-aminobutyric acid (GABA) B receptor, 2, mRNA
           (cDNA clone MGC:43091 IMAGE:5260138), complete cds
          Length = 3426

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 243 ggggccggcgtctgcgcgcgcgcc 266
           ||||||||||||| ||||||||||
Sbjct: 248 ggggccggcgtctccgcgcgcgcc 225
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>emb|AL353782.23| Human DNA sequence from clone RP11-207C11 on chromosome 9 Contains the 5'
              end of the GPR51 gene for G protein-coupled receptor 51
              (HG20, GABBR2, GPRC3B, GABABR2), the 3' end of a novel gene
              (FLJ36928), a CDC10 cell division cycle 10 homolog (S.
              cerevisiae) (SEPT7) pseudogene and a CpG island, complete
              sequence
          Length = 165358

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 243    ggggccggcgtctgcgcgcgcgcc 266
              ||||||||||||| ||||||||||
Sbjct: 114755 ggggccggcgtctccgcgcgcgcc 114778
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     gcgcgggctgcggctcgggg 215
               ||||||||||||||||||||
Sbjct: 1728554 gcgcgggctgcggctcgggg 1728573
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>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13
          Length = 349563

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cggcgacggcggggccggcg 252
              ||||||||||||||||||||
Sbjct: 334688 cggcgacggcggggccggcg 334707
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>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13
          Length = 346186

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    cggcgacggcggggccggcg 252
              ||||||||||||||||||||
Sbjct: 345395 cggcgacggcggggccggcg 345376
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>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13
          Length = 349564

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cggcgacggcggggccggcg 252
              ||||||||||||||||||||
Sbjct: 153083 cggcgacggcggggccggcg 153102



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cggcgacggcggggccggcg 252
              ||||||||||||||||||||
Sbjct: 152918 cggcgacggcggggccggcg 152937
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>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13
          Length = 341957

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cggcgacggcggggccggcg 252
              ||||||||||||||||||||
Sbjct: 150288 cggcgacggcggggccggcg 150307
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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    cgccggcgcgggctgcggct 210
              ||||||||||||||||||||
Sbjct: 320275 cgccggcgcgggctgcggct 320256
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>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    cgccggcgcgggctgcggct 210
              ||||||||||||||||||||
Sbjct: 217455 cgccggcgcgggctgcggct 217436
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>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12
          Length = 349726

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    cgccggcgcgggctgcggct 210
              ||||||||||||||||||||
Sbjct: 202464 cgccggcgcgggctgcggct 202445
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>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14
          Length = 343050

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cggcgacggcggggccggcg 252
              ||||||||||||||||||||
Sbjct: 150299 cggcgacggcggggccggcg 150318
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>emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 8/14
          Length = 306050

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    cggcgacggcggggccggcg 252
              ||||||||||||||||||||
Sbjct: 199490 cggcgacggcggggccggcg 199471
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>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14
          Length = 320050

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cggcgacggcggggccggcg 252
              ||||||||||||||||||||
Sbjct: 172084 cggcgacggcggggccggcg 172103



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cggcgacggcggggccggcg 252
              ||||||||||||||||||||
Sbjct: 171967 cggcgacggcggggccggcg 171986
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>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08,
             complete sequence
          Length = 157734

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 232   gcggcgacggcggggccggcgtctgcgcgcgc 263
             ||||||||||||| | ||||||||||| ||||
Sbjct: 13074 gcggcgacggcggcggcggcgtctgcgggcgc 13105
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>emb|AL449123.1|LMFLUNK03 Leishmania major Friedlin cosmid L8530A, unmapped
          Length = 40970

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   cccgttcccgttcccgcaga 76
            ||||||||||||||||||||
Sbjct: 8185 cccgttcccgttcccgcaga 8204
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 54      gtgcccgttcccgttcccgc 73
               ||||||||||||||||||||
Sbjct: 1156447 gtgcccgttcccgttcccgc 1156466
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>ref|NM_005458.5| Homo sapiens gamma-aminobutyric acid (GABA) B receptor, 2 (GABBR2),
           mRNA
          Length = 5786

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 243 ggggccggcgtctgcgcgcgcgcc 266
           ||||||||||||| ||||||||||
Sbjct: 191 ggggccggcgtctccgcgcgcgcc 168
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 232      gcggcgacggcggggccggcgtctgcgcgcgc 263
                ||||||||||||| | ||||||||||| ||||
Sbjct: 29103608 gcggcgacggcggcggcggcgtctgcgggcgc 29103639
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 222      tgcgccgcctgcggcgacggcggggccggcgt 253
                ||||||| | ||||||||||||| ||||||||
Sbjct: 15940814 tgcgccgacggcggcgacggcggcgccggcgt 15940783
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     cgccgcctgcggcgacggcg 243
               ||||||||||||||||||||
Sbjct: 6966159 cgccgcctgcggcgacggcg 6966140
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>gb|AY826880.1| Heterocapsa triquetra clone HTNIFH1 chloroplast protochlorophyllide
           reductase mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 1172

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 190 ccgccggcgcgggctgcggc 209
           ||||||||||||||||||||
Sbjct: 302 ccgccggcgcgggctgcggc 321
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 49      cccccgtgcccgttcccgttcccg 72
               ||||||| ||||||||||||||||
Sbjct: 5946913 cccccgttcccgttcccgttcccg 5946890
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>gb|AF056085.1|AF056085 Homo sapiens GABA-B receptor mRNA, complete cds
          Length = 5786

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 243 ggggccggcgtctgcgcgcgcgcc 266
           ||||||||||||| ||||||||||
Sbjct: 191 ggggccggcgtctccgcgcgcgcc 168
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>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0061B07
          Length = 124766

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   cgccgcctgcggcgacggcg 243
             ||||||||||||||||||||
Sbjct: 25586 cgccgcctgcggcgacggcg 25567
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>dbj|AP005565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1238_G07
          Length = 78304

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 222   tgcgccgcctgcggcgacggcggggccggcgt 253
             ||||||| | ||||||||||||| ||||||||
Sbjct: 11527 tgcgccgacggcggcgacggcggcgccggcgt 11496
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>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1081_G10
          Length = 107955

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 222    tgcgccgcctgcggcgacggcggggccggcgt 253
              ||||||| | ||||||||||||| ||||||||
Sbjct: 103940 tgcgccgacggcggcgacggcggcgccggcgt 103909
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>emb|AJ327397.1|HSA327397 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-AD10R
          Length = 734

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 243 ggggccggcgtctgcgcgcgcgcc 266
           ||||||||||||| ||||||||||
Sbjct: 42  ggggccggcgtctccgcgcgcgcc 19


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,479,680
Number of Sequences: 3902068
Number of extensions: 1479680
Number of successful extensions: 35953
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34193
Number of HSP's gapped (non-prelim): 1757
length of query: 336
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 314
effective length of database: 17,147,199,772
effective search space: 5384220728408
effective search space used: 5384220728408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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