ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast70d06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 813 bits (410), Expect = 0.0 Identities = 413/414 (99%) Strand = Plus / Plus Query: 3 caggaaccagccggtgcagcccgaaggagggaagctcaggttcgtcatcgacttgcttga 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1209 caggaaccagccggtgcagcccgaaggagggaagctcaggttcgtcatcgacttgcttga 1268 Query: 63 gacggagctgctccacctcttcaagctcgaaggggccgcgttcctcgaggggatacgcag 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1269 gacggagctgctccacctcttcaagctcgaaggggccgcgttcctcgaggggatacgcag 1328 Query: 123 ggtcttcaagttcgagacgcccgagattcatgacagggacaagtttgcttggttcagaga 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1329 ggtcttcaagttcgagacgcccgagattcatgacagggacaagtttgcttggttcagaga 1388 Query: 183 cgaggaattcgcgcgacaaaccatcgcagggatgaacccaatgagcatccaactggtcac 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1389 cgaggaattcgcgcgacaaaccatcgcagggatgaacccaatgagcatccaactggtcac 1448 Query: 243 ggagtttcctatcaagagcaatctggacgaggcaacctacggcccggcagactccctcat 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1449 ggagtttcctatcaagagcaatctggacgaggcaacctacggcccggcagactccctcat 1508 Query: 303 cactaaagaggtggttgaagagcagatcaggcgtgtcttgacagctgatgaggccgtgca 362 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1509 cactaaagaggtggttgaagagcagatcaggcgtgtcatgacagctgatgaggccgtgca 1568 Query: 363 aaacaagaagctcttcatgctcgactaccacgacctgttgctgccatacgtaca 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1569 aaacaagaagctcttcatgctcgactaccacgacctgttgctgccatacgtaca 1622
>emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:2 gene) Length = 3023 Score = 250 bits (126), Expect = 3e-63 Identities = 342/414 (82%) Strand = Plus / Plus Query: 3 caggaaccagccggtgcagcccgaaggagggaagctcaggttcgtcatcgacttgcttga 62 |||||||||||| |||||||| ||||| || ||| ||||| || || | || ||||||| Sbjct: 1196 caggaaccagcccgtgcagcctgaagggggcaaggtcaggctcatcctggatttgcttgc 1255 Query: 63 gacggagctgctccacctcttcaagctcgaaggggccgcgttcctcgaggggatacgcag 122 | ||||||| | || || | |||||||||||||| | |||| | ||||||||||| | Sbjct: 1256 caaggagctggttcatctggttaagctcgaaggggcggagttcgtggaggggatacgtcg 1315 Query: 123 ggtcttcaagttcgagacgcccgagattcatgacagggacaagtttgcttggttcagaga 182 |||||||||||||| || |||||||||||||||| ||||||| |||||||||||||||| Sbjct: 1316 agtcttcaagttcgaaacccccgagattcatgacatggacaagcttgcttggttcagaga 1375 Query: 183 cgaggaattcgcgcgacaaaccatcgcagggatgaacccaatgagcatccaactggtcac 242 |||||| || ||||| |||||| | ||||||||||||||| | ||||||||||| ||||| Sbjct: 1376 cgaggagtttgcgcggcaaacccttgcagggatgaacccactcagcatccaactagtcac 1435 Query: 243 ggagtttcctatcaagagcaatctggacgaggcaacctacggcccggcagactccctcat 302 |||||| |||||| ||||| ||||||||| | ||||||||||| |||||||| || Sbjct: 1436 ggagttgcctatcgtcagcaagctggacgagcttaagtacggcccggcggactcccttat 1495 Query: 303 cactaaagaggtggttgaagagcagatcaggcgtgtcttgacagctgatgaggccgtgca 362 |||||| ||| || ||||| ||||||||| ||| || |||| || || ||||||||| Sbjct: 1496 cactaaggagctgattgaaaagcagatcaaccgtatcatgacggccgaagaggccgtggc 1555 Query: 363 aaacaagaagctcttcatgctcgactaccacgacctgttgctgccatacgtaca 416 | || ||||| |||||||| |||||||||||| || |||| ||||||||||| Sbjct: 1556 tcagaaaaagctgttcatgctggactaccacgacttgctgctaccatacgtaca 1609
>emb|AJ270938.1|OSA270938 Oryza sativa mRNA for lipoxygenase (rci-1 gene) Length = 3018 Score = 161 bits (81), Expect = 2e-36 Identities = 218/264 (82%), Gaps = 6/264 (2%) Strand = Plus / Plus Query: 139 acgcccgagattcatgacagggacaagtttgcttggttcagagacgaggaattcgcgcga 198 |||||||||||||| |||| ||||||| |||| ||||||||||||||||| |||||||| Sbjct: 1254 acgcccgagattcacgacaaggacaagcttgcatggttcagagacgaggagttcgcgcgg 1313 Query: 199 caaaccatcgcagggatgaacccaatgagcatccaactggtca------cggagtttcct 252 ||||| | |||||||||||||| | ||||||||||| |||| |||| || ||| Sbjct: 1314 caaacgctggcagggatgaaccctctcagcatccaacttgtcagggacacggacttccct 1373 Query: 253 atcaagagcaatctggacgaggcaacctacggcccggcagactccctcatcactaaagag 312 || ||||| |||||||||| |||||||||||| | |||||||||||||| |||||| Sbjct: 1374 atattcagcaagctggacgaggaaacctacggcccaggggactccctcatcaccaaagag 1433 Query: 313 gtggttgaagagcagatcaggcgtgtcttgacagctgatgaggccgtgcaaaacaagaag 372 || ||||||||||||| | | ||| ||||||| || ||||||||| | || |||||| Sbjct: 1434 ctgattgaagagcagattaatggggtcatgacagcagaggaggccgtggagaagaagaag 1493 Query: 373 ctcttcatgctcgactaccacgac 396 || |||||||| |||||||||||| Sbjct: 1494 ctgttcatgctggactaccacgac 1517
>dbj|AK072241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002P20, full insert sequence Length = 3080 Score = 161 bits (81), Expect = 2e-36 Identities = 218/264 (82%), Gaps = 6/264 (2%) Strand = Plus / Plus Query: 139 acgcccgagattcatgacagggacaagtttgcttggttcagagacgaggaattcgcgcga 198 |||||||||||||| |||| ||||||| |||| ||||||||||||||||| |||||||| Sbjct: 1273 acgcccgagattcacgacaaggacaagcttgcatggttcagagacgaggagttcgcgcgg 1332 Query: 199 caaaccatcgcagggatgaacccaatgagcatccaactggtca------cggagtttcct 252 ||||| | |||||||||||||| | ||||||||||| |||| |||| || ||| Sbjct: 1333 caaacgctggcagggatgaaccctctcagcatccaacttgtcagggacacggacttccct 1392 Query: 253 atcaagagcaatctggacgaggcaacctacggcccggcagactccctcatcactaaagag 312 || ||||| |||||||||| |||||||||||| | |||||||||||||| |||||| Sbjct: 1393 atattcagcaagctggacgaggaaacctacggcccaggggactccctcatcaccaaagag 1452 Query: 313 gtggttgaagagcagatcaggcgtgtcttgacagctgatgaggccgtgcaaaacaagaag 372 || ||||||||||||| | | ||| ||||||| || ||||||||| | || |||||| Sbjct: 1453 ctgattgaagagcagattaatggggtcatgacagcagaggaggccgtggagaagaagaag 1512 Query: 373 ctcttcatgctcgactaccacgac 396 || |||||||| |||||||||||| Sbjct: 1513 ctgttcatgctggactaccacgac 1536
>dbj|AK066737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079G10, full insert sequence Length = 2747 Score = 161 bits (81), Expect = 2e-36 Identities = 218/264 (82%), Gaps = 6/264 (2%) Strand = Plus / Plus Query: 139 acgcccgagattcatgacagggacaagtttgcttggttcagagacgaggaattcgcgcga 198 |||||||||||||| |||| ||||||| |||| ||||||||||||||||| |||||||| Sbjct: 780 acgcccgagattcacgacaaggacaagcttgcatggttcagagacgaggagttcgcgcgg 839 Query: 199 caaaccatcgcagggatgaacccaatgagcatccaactggtca------cggagtttcct 252 ||||| | |||||||||||||| | ||||||||||| |||| |||| || ||| Sbjct: 840 caaacgctggcagggatgaaccctctcagcatccaacttgtcagggacacggacttccct 899 Query: 253 atcaagagcaatctggacgaggcaacctacggcccggcagactccctcatcactaaagag 312 || ||||| |||||||||| |||||||||||| | |||||||||||||| |||||| Sbjct: 900 atattcagcaagctggacgaggaaacctacggcccaggggactccctcatcaccaaagag 959 Query: 313 gtggttgaagagcagatcaggcgtgtcttgacagctgatgaggccgtgcaaaacaagaag 372 || ||||||||||||| | | ||| ||||||| || ||||||||| | || |||||| Sbjct: 960 ctgattgaagagcagattaatggggtcatgacagcagaggaggccgtggagaagaagaag 1019 Query: 373 ctcttcatgctcgactaccacgac 396 || |||||||| |||||||||||| Sbjct: 1020 ctgttcatgctggactaccacgac 1043
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 159 ggacaagtttgcttggttcagagacgaggaattcgcgcgacaaaccatcgcagggatgaa 218 ||||||| |||| ||||||||||||||||| |||||||| ||||| | ||||||||||| Sbjct: 22890733 ggacaagcttgcatggttcagagacgaggagttcgcgcggcaaacgctggcagggatgaa 22890674 Query: 219 cccaatgagcatccaactggtca 241 ||| | ||||||||||| |||| Sbjct: 22890673 ccctctcagcatccaacttgtca 22890651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 259 agcaatctggacgaggcaacctacggcccggcagactccctcatcactaaagaggtggtt 318 ||||| |||||||||| |||||||||||| | |||||||||||||| |||||| || || Sbjct: 22890497 agcaagctggacgaggaaacctacggcccaggggactccctcatcaccaaagagctgatt 22890438 Query: 319 gaagagcagat 329 ||||||||||| Sbjct: 22890437 gaagagcagat 22890427 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 159 ggacaagtttgcttggttcagagacgaggaattcgcgcgacaaaccatcgcagggatgaa 218 ||||||| |||| ||||| ||||||||||| |||||||| |||| | ||||||||||| Sbjct: 22956815 ggacaagcttgcatggttgagagacgaggagttcgcgcggaaaacgctggcagggatgaa 22956874 Query: 219 cccaatgagcatccaactggtca 241 ||| | ||||||||||| |||| Sbjct: 22956875 ccctctcagcatccaacttgtca 22956897 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 292 gactccctcatcactaaagaggtggttgaagagcagat 329 |||||||||||||| |||||| || ||||||||||||| Sbjct: 22968411 gactccctcatcaccaaagagctgattgaagagcagat 22968448 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 353 aggccgtgcaaaacaagaagctcttcatgctcgactaccacgac 396 |||||||| | || |||||||| |||||||| |||||||||||| Sbjct: 22968571 aggccgtggagaagaagaagctgttcatgctggactaccacgac 22968614 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 353 aggccgtgcaaaacaagaagctcttcatgctcgactaccacgac 396 |||||||| | || |||||||| |||||||| |||||||||||| Sbjct: 22890304 aggccgtggagaagaagaagctgttcatgctggactaccacgac 22890261 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 259 agcaatctggacgaggcaacctacggccc 287 ||||| |||||||||| |||||||||||| Sbjct: 22957051 agcaagctggacgaggaaacctacggccc 22957079 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 127 ttcaagttcgagacgcccgagattcatgacag 158 ||||||||| | |||||||||||||| ||||| Sbjct: 22956277 ttcaagttccaaacgcccgagattcacgacag 22956308
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 159 ggacaagtttgcttggttcagagacgaggaattcgcgcgacaaaccatcgcagggatgaa 218 ||||||| |||| ||||||||||||||||| |||||||| ||||| | ||||||||||| Sbjct: 22818924 ggacaagcttgcatggttcagagacgaggagttcgcgcggcaaacgctggcagggatgaa 22818865 Query: 219 cccaatgagcatccaactggtca 241 ||| | ||||||||||| |||| Sbjct: 22818864 ccctctcagcatccaacttgtca 22818842 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 259 agcaatctggacgaggcaacctacggcccggcagactccctcatcactaaagaggtggtt 318 ||||| |||||||||| |||||||||||| | |||||||||||||| |||||| || || Sbjct: 22818688 agcaagctggacgaggaaacctacggcccaggggactccctcatcaccaaagagctgatt 22818629 Query: 319 gaagagcagat 329 ||||||||||| Sbjct: 22818628 gaagagcagat 22818618 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 159 ggacaagtttgcttggttcagagacgaggaattcgcgcgacaaaccatcgcagggatgaa 218 ||||||| |||| ||||| ||||||||||| |||||||| |||| | ||||||||||| Sbjct: 22885006 ggacaagcttgcatggttgagagacgaggagttcgcgcggaaaacgctggcagggatgaa 22885065 Query: 219 cccaatgagcatccaactggtca 241 ||| | ||||||||||| |||| Sbjct: 22885066 ccctctcagcatccaacttgtca 22885088 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 292 gactccctcatcactaaagaggtggttgaagagcagat 329 |||||||||||||| |||||| || ||||||||||||| Sbjct: 22896602 gactccctcatcaccaaagagctgattgaagagcagat 22896639 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 353 aggccgtgcaaaacaagaagctcttcatgctcgactaccacgac 396 |||||||| | || |||||||| |||||||| |||||||||||| Sbjct: 22896762 aggccgtggagaagaagaagctgttcatgctggactaccacgac 22896805 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 353 aggccgtgcaaaacaagaagctcttcatgctcgactaccacgac 396 |||||||| | || |||||||| |||||||| |||||||||||| Sbjct: 22818495 aggccgtggagaagaagaagctgttcatgctggactaccacgac 22818452 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 259 agcaatctggacgaggcaacctacggccc 287 ||||| |||||||||| |||||||||||| Sbjct: 22885242 agcaagctggacgaggaaacctacggccc 22885270 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 127 ttcaagttcgagacgcccgagattcatgacag 158 ||||||||| | |||||||||||||| ||||| Sbjct: 22884468 ttcaagttccaaacgcccgagattcacgacag 22884499
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 259 agcaatctggacgaggcaacctacggcccggcagactccctcatcactaaagaggtggtt 318 ||||| |||||||||| |||||||||||| | |||||||||||||| |||||| || || Sbjct: 66347 agcaagctggacgaggaaacctacggcccaggggactccctcatcaccaaagagctgatt 66406 Query: 319 gaagagcagat 329 ||||||||||| Sbjct: 66407 gaagagcagat 66417 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 159 ggacaagtttgcttggttcagagacgaggaattcgcgcgacaaaccatcgcagggatgaa 218 ||||||| |||| ||||||||||||||||| |||||||| ||||| | ||||||||||| Sbjct: 66111 ggacaagcttgcatggttcagagacgaggagttcgcgcggcaaacgctggcagggatgaa 66170 Query: 219 cccaatgagcatccaactggtca 241 ||| | ||||||||||| |||| Sbjct: 66171 ccctctcagcatccaacttgtca 66193 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 353 aggccgtgcaaaacaagaagctcttcatgctcgactaccacgac 396 |||||||| | || |||||||| |||||||| |||||||||||| Sbjct: 66540 aggccgtggagaagaagaagctgttcatgctggactaccacgac 66583 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 127 ttcaagttcgagacgcccgagattcatgacag 158 ||||||||| | |||||||||||||| ||||| Sbjct: 548 ttcaagttccaaacgcccgagattcacgacag 517
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 159 ggacaagtttgcttggttcagagacgaggaattcgcgcgacaaaccatcgcagggatgaa 218 ||||||| |||| ||||| ||||||||||| |||||||| |||| | ||||||||||| Sbjct: 66092 ggacaagcttgcatggttgagagacgaggagttcgcgcggaaaacgctggcagggatgaa 66151 Query: 219 cccaatgagcatccaactggtca 241 ||| | ||||||||||| |||| Sbjct: 66152 ccctctcagcatccaacttgtca 66174 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 292 gactccctcatcactaaagaggtggttgaagagcagat 329 |||||||||||||| |||||| || ||||||||||||| Sbjct: 77688 gactccctcatcaccaaagagctgattgaagagcagat 77725 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 353 aggccgtgcaaaacaagaagctcttcatgctcgactaccacgac 396 |||||||| | || |||||||| |||||||| |||||||||||| Sbjct: 77848 aggccgtggagaagaagaagctgttcatgctggactaccacgac 77891 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 259 agcaatctggacgaggcaacctacggccc 287 ||||| |||||||||| |||||||||||| Sbjct: 66328 agcaagctggacgaggaaacctacggccc 66356 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 127 ttcaagttcgagacgcccgagattcatgacag 158 ||||||||| | |||||||||||||| ||||| Sbjct: 65554 ttcaagttccaaacgcccgagattcacgacag 65585
>ref|XM_483276.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2775 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 159 ggacaagtttgcttggttcagagacgaggaattcgcg 195 ||||||||| || ||| ||||||||||||| |||||| Sbjct: 1248 ggacaagttcgcatggctcagagacgaggagttcgcg 1284
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 159 ggacaagtttgcttggttcagagacgaggaattcgcg 195 ||||||||| || ||| ||||||||||||| |||||| Sbjct: 25211089 ggacaagttcgcatggctcagagacgaggagttcgcg 25211053
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1168A08 Length = 138135 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 159 ggacaagtttgcttggttcagagacgaggaattcgcg 195 ||||||||| || ||| ||||||||||||| |||||| Sbjct: 76212 ggacaagttcgcatggctcagagacgaggagttcgcg 76176
>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds Length = 2664 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 159 ggacaagtttgcttggttcagagacgaggaattcgcg 195 ||||||||| || ||| ||||||||||||| |||||| Sbjct: 933 ggacaagttcgcatggctcagagacgaggagttcgcg 969
>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for lipoxygenase, complete cds Length = 3007 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 159 ggacaagtttgcttggttcagagacgaggaattcgcg 195 ||||||||| || ||| ||||||||||||| |||||| Sbjct: 1366 ggacaagttcgcatggctcagagacgaggagttcgcg 1402
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3123 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 tggttcagagacgaggaattcgcg 195 ||||||||||||||||| |||||| Sbjct: 1376 tggttcagagacgaggagttcgcg 1399
>ref|XM_586542.2| PREDICTED: Bos taurus similar to Adrenomedullin receptor (AM-R) (LOC509554), mRNA Length = 1268 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 gacggagctgctccacctcttcaa 86 |||||||||||||||| ||||||| Sbjct: 149 gacggagctgctccacttcttcaa 172
>gb|AC129576.11| Mus musculus chromosome 10, clone RP24-343D9, complete sequence Length = 136276 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gagctgctccacctcttcaa 86 |||||||||||||||||||| Sbjct: 108212 gagctgctccacctcttcaa 108193
>gb|AY254348.1| Nicotiana attenuata lipoxygenase (Lox2) mRNA, partial cds Length = 2836 Score = 40.1 bits (20), Expect = 5.7 Identities = 41/48 (85%) Strand = Plus / Plus Query: 157 agggacaagtttgcttggttcagagacgaggaattcgcgcgacaaacc 204 |||||||||||| ||||||| | ||||| |||||| || || |||||| Sbjct: 1179 agggacaagttttcttggtttaaagacgtggaatttgctcgtcaaacc 1226
>ref|XM_762864.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_228_14877_11356) partial mRNA Length = 3522 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tcttgacagctgatgaggcc 357 |||||||||||||||||||| Sbjct: 2411 tcttgacagctgatgaggcc 2430
>gb|AC162038.6| Mus musculus 6 BAC RP24-576J4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 175787 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 247 tttcctatcaagagcaatctggacgagg 274 ||||||||||||||||| || ||||||| Sbjct: 154097 tttcctatcaagagcaacctagacgagg 154070
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene) Length = 2967 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 tggttcagagacgaggaattcgcg 195 ||||||||||||||||| |||||| Sbjct: 1269 tggttcagagacgaggagttcgcg 1292
>ref|NM_007412.1| Mus musculus adrenomedullin receptor (Admr), mRNA Length = 1568 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gagctgctccacctcttcaa 86 |||||||||||||||||||| Sbjct: 189 gagctgctccacctcttcaa 208
>dbj|AK031480.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030438M05 product:ADRENOMEDULLIN RECEPTOR, full insert sequence Length = 3956 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gagctgctccacctcttcaa 86 |||||||||||||||||||| Sbjct: 229 gagctgctccacctcttcaa 248
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 tggttcagagacgaggaattcgcg 195 ||||||||||||||||| |||||| Sbjct: 5280234 tggttcagagacgaggagttcgcg 5280211
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 tggttcagagacgaggaattcgcg 195 ||||||||||||||||| |||||| Sbjct: 6537 tggttcagagacgaggagttcgcg 6514
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full insert sequence Length = 3160 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 tggttcagagacgaggaattcgcg 195 ||||||||||||||||| |||||| Sbjct: 1375 tggttcagagacgaggagttcgcg 1398
>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full insert sequence Length = 2250 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 tggttcagagacgaggaattcgcg 195 ||||||||||||||||| |||||| Sbjct: 537 tggttcagagacgaggagttcgcg 560
>gb|AC155330.3| Mus musculus 6 BAC RP24-146L23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 215602 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 tttcctatcaagagcaatctggacgagg 274 ||||||||||||||||| || ||||||| Sbjct: 148338 tttcctatcaagagcaacctagacgagg 148365
>gb|AF412953.2| Vespula vulgaris microsatellite 10 sequence Length = 456 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 374 tcttcatgctcgactaccacgacc 397 |||||||||||||||| ||||||| Sbjct: 157 tcttcatgctcgactaacacgacc 180
>dbj|D17292.1|MUSGPCR Mus musculus mRNA for G protein-coupled receptor, complete cds Length = 1568 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gagctgctccacctcttcaa 86 |||||||||||||||||||| Sbjct: 189 gagctgctccacctcttcaa 208 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,712,414 Number of Sequences: 3902068 Number of extensions: 2712414 Number of successful extensions: 43216 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43093 Number of HSP's gapped (non-prelim): 117 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
