ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast70d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018193.1| Zea mays clone EL01N0559B01.c mRNA sequence 84 4e-13
2gb|AY112481.1| Zea mays CL16599_1 mRNA sequence 76 1e-10
3ref|XM_467364.1| Oryza sativa (japonica cultivar-group), mRNA 56 9e-05
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
5dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
6gb|BC012884.1| Homo sapiens CD47 molecule, mRNA (cDNA clone MGC:... 44 0.35
7gb|AC012020.17| Homo sapiens 3 BAC RP11-861A13 (Roswell Park Can... 44 0.35
8gb|AF540016.1| Homo sapiens integrin-associated protein CD47 gen... 44 0.35
9gb|BC010016.2| Homo sapiens CD47 molecule, mRNA (cDNA clone MGC:... 44 0.35
10ref|NM_001025079.1| Homo sapiens CD47 molecule (CD47), transcrip... 44 0.35
11ref|NM_198793.2| Homo sapiens CD47 molecule (CD47), transcript v... 44 0.35
12ref|NM_001777.3| Homo sapiens CD47 molecule (CD47), transcript v... 44 0.35
13emb|CR857514.1| Pongo pygmaeus mRNA; cDNA DKFZp459F197 (from clo... 44 0.35
14emb|CR615658.1| full-length cDNA clone CS0DD005YB19 of Neuroblas... 44 0.35
15emb|Z25521.1|HSINASPA H.sapiens integrin associated protein mRNA... 44 0.35
16emb|X69398.1|HSOA3MR H.sapiens mRNA for OA3 antigenic surface de... 44 0.35
17emb|CR621937.1| full-length cDNA clone CS0DB006YL21 of Neuroblas... 44 0.35
18emb|CR601569.1| full-length cDNA clone CS0DE014YE13 of Placenta ... 44 0.35
19emb|CR592842.1| full-length cDNA clone CS0DI075YH06 of Placenta ... 44 0.35
20emb|CR591788.1| full-length cDNA clone CS0DI069YB19 of Placenta ... 44 0.35
21dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
22ref|NM_183652.1| Oryza sativa (japonica cultivar-group), predic... 42 1.4
23gb|AC125196.4| Mus musculus BAC clone RP23-248M23 from chromosom... 42 1.4
24gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 42 1.4
25emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 1.4
26gb|CP000088.1| Thermobifida fusca YX, complete genome 42 1.4
27dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 1.4
28gb|AE011907.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.4
29dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
30dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
31dbj|AK105791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
32gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 1.4
33ref|XM_477050.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
34gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete g... 40 5.5
35gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspa... 40 5.5
36gb|AC095018.2| Drosophila melanogaster clone BACR24L18, complete... 40 5.5
37ref|XM_424982.1| PREDICTED: Gallus gallus similar to mKIAA1045 p... 40 5.5
38gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 5.5
39ref|XM_879867.1| PREDICTED: Bos taurus similar to Rho GTPase act... 40 5.5
40ref|XM_583103.2| PREDICTED: Bos taurus similar to Rho GTPase act... 40 5.5
41gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
42gb|AC118704.17| Mus musculus chromosome 13, clone RP24-114K21, c... 40 5.5
43ref|XM_843990.1| PREDICTED: Canis familiaris similar to sin3 ass... 40 5.5
44gb|BT016031.1| Drosophila melanogaster RE04174 full insert cDNA 40 5.5
45gb|AC107789.7| Mus musculus chromosome 1, clone RP23-409K18, com... 40 5.5
46emb|AL512629.7| Human DNA sequence from clone RP11-564N10 on chr... 40 5.5
47gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.5
48emb|X54453.1|DMABDA D. melanogaster abdominal-A (abd-A) mRNA for... 40 5.5
49gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.5
50ref|NM_169733.2| Drosophila melanogaster abdominal A CG10325-RB,... 40 5.5
51ref|NM_057345.2| Drosophila melanogaster abdominal A CG10325-RA,... 40 5.5
52gb|AC096756.3| Homo sapiens BAC clone RP11-526A4 from 4, complet... 40 5.5
53dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
54dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
55dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
56dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
57dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
58dbj|AK069286.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
59emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.5
60dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
61gb|AY107645.1| Zea mays PCO100030 mRNA sequence 40 5.5
62gb|AE003715.4| Drosophila melanogaster chromosome 3R, section 53... 40 5.5
63gb|AC140241.3| Mus musculus BAC clone RP23-283I15 from chromosom... 40 5.5
64gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 5.5
65gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
66gb|L31790.1|L31790 Drosophila melanogaster (P1 DS00846 (D02)) DN... 40 5.5
67gb|U31961.1|DMU31961 Drosophila melanogaster bithorax complex (B... 40 5.5
68gb|AC163715.5| Mus musculus BAC clone RP23-367H6 from chromosome... 40 5.5
69dbj|AB005901.1| Streptomyces kasugaensis DNA, kasugamycin biosyn... 40 5.5 
>gb|BT018193.1| Zea mays clone EL01N0559B01.c mRNA sequence
          Length = 1522

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 107/129 (82%)
 Strand = Plus / Plus

                                                                       
Query: 280 ggcccgccgcggggtcgcggccgccgcagtgtccagccctgccgcggtcccctccacggg 339
           ||||||| |||||||| ||| |||||| ||||||||||| || | |    ||  | ||||
Sbjct: 301 ggcccgcggcggggtctcggtcgccgccgtgtccagccccgctgtgtcggccgtcgcggg 360

                                                                       
Query: 340 gaaagatggcaaacaggttcctaaggatttcctccatatcaatgattttgancaagatac 399
           ||| |||| |||||||| ||||||||||||||| |||||||||||||||||  | |||||
Sbjct: 361 gaaggatgccaaacaggctcctaaggatttccttcatatcaatgattttgacaaggatac 420

                    
Query: 400 aatcatgaa 408
           ||| |||||
Sbjct: 421 aataatgaa 429
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>gb|AY112481.1| Zea mays CL16599_1 mRNA sequence
          Length = 512

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                       
Query: 336 cggggaaagatggcaaacaggttcctaaggatttcctccatatcaatgattttgancaag 395
           ||||||| |||| |||||||| ||||||||||||||| || |||| |||||||||  | |
Sbjct: 264 cggggaaggatgccaaacaggctcctaaggatttccttcaaatcattgattttgacaagg 323

                            
Query: 396 atacaatcatgaagatt 412
           ||||||| |||||||||
Sbjct: 324 atacaataatgaagatt 340
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>ref|XM_467364.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1104

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 341 aaagatggcaaacaggttcctaaggatttcctccatatcaatgattttgancaagataca 400
           ||||||| ||||||| |||||||||| || || |||||  ||||||| ||  | ||||||
Sbjct: 175 aaagatgccaaacagattcctaaggactttcttcatattgatgatttcgacaaggataca 234

                      
Query: 401 atcatgaagat 411
           |||||||||||
Sbjct: 235 atcatgaagat 245
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                            
Query: 349      caaacaggttcctaaggatttcctccatatcaatgattttgancaagatacaatcatgaa 408
                ||||||| |||||||||| || || |||||  ||||||| ||  | ||||||||||||||
Sbjct: 29097813 caaacagattcctaaggactttcttcatattgatgatttcgacaaggatacaatcatgaa 29097872

                   
Query: 409      gat 411
                |||
Sbjct: 29097873 gat 29097875



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 285      gccgcggggtcgcggccgccgc 306
                ||||||||||||||||||||||
Sbjct: 28701957 gccgcggggtcgcggccgccgc 28701978
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>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0724B10
          Length = 169143

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                          
Query: 349    caaacaggttcctaaggatttcctccatatcaatgattttgancaagatacaatcatgaa 408
              ||||||| |||||||||| || || |||||  ||||||| ||  | ||||||||||||||
Sbjct: 143978 caaacagattcctaaggactttcttcatattgatgatttcgacaaggatacaatcatgaa 144037

                 
Query: 409    gat 411
              |||
Sbjct: 144038 gat 144040
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>gb|BC012884.1| Homo sapiens CD47 molecule, mRNA (cDNA clone MGC:9240
           IMAGE:3857911), complete cds
          Length = 1273

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 97  gcccgccgcggggtcgccgccgccgc 72
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>gb|AC012020.17| Homo sapiens 3 BAC RP11-861A13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 177835

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 281   gcccgccgcggggtcgcggccgccgc 306
             ||||||||||||||||| ||||||||
Sbjct: 80394 gcccgccgcggggtcgccgccgccgc 80419
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>gb|AF540016.1| Homo sapiens integrin-associated protein CD47 gene, promoter region
           and partial cds
          Length = 660

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 581 gcccgccgcggggtcgccgccgccgc 556
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>gb|BC010016.2| Homo sapiens CD47 molecule, mRNA (cDNA clone MGC:15298
           IMAGE:4303534), complete cds
          Length = 1254

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 76  gcccgccgcggggtcgccgccgccgc 51
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>ref|NM_001025079.1| Homo sapiens CD47 molecule (CD47), transcript variant 3, mRNA
          Length = 5313

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 174 gcccgccgcggggtcgccgccgccgc 149
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>ref|NM_198793.2| Homo sapiens CD47 molecule (CD47), transcript variant 2, mRNA
          Length = 5288

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 174 gcccgccgcggggtcgccgccgccgc 149
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>ref|NM_001777.3| Homo sapiens CD47 molecule (CD47), transcript variant 1, mRNA
          Length = 5346

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 174 gcccgccgcggggtcgccgccgccgc 149
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>emb|CR857514.1| Pongo pygmaeus mRNA; cDNA DKFZp459F197 (from clone DKFZp459F197)
          Length = 5044

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 62  gcccgccgcggggtcgccgccgccgc 37
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>emb|CR615658.1| full-length cDNA clone CS0DD005YB19 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1394

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 208 gcccgccgcggggtcgccgccgccgc 183
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>emb|Z25521.1|HSINASPA H.sapiens integrin associated protein mRNA, complete CDS,
          Length = 1270

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 133 gcccgccgcggggtcgccgccgccgc 108
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>emb|X69398.1|HSOA3MR H.sapiens mRNA for OA3 antigenic surface determinant
          Length = 1285

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 100 gcccgccgcggggtcgccgccgccgc 75
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>emb|CR621937.1| full-length cDNA clone CS0DB006YL21 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 1145

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 97  gcccgccgcggggtcgccgccgccgc 72
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>emb|CR601569.1| full-length cDNA clone CS0DE014YE13 of Placenta of Homo sapiens
           (human)
          Length = 1260

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 142 gcccgccgcggggtcgccgccgccgc 117
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>emb|CR592842.1| full-length cDNA clone CS0DI075YH06 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1189

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 94  gcccgccgcggggtcgccgccgccgc 69
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>emb|CR591788.1| full-length cDNA clone CS0DI069YB19 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1195

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 gcccgccgcggggtcgcggccgccgc 306
           ||||||||||||||||| ||||||||
Sbjct: 77  gcccgccgcggggtcgccgccgccgc 52
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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0459B01
          Length = 163087

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 285   gccgcggggtcgcggccgccgc 306
             ||||||||||||||||||||||
Sbjct: 18530 gccgcggggtcgcggccgccgc 18551
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>ref|NM_183652.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2457

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 57   cgcgccgtccacctccgccgg 77
            |||||||||||||||||||||
Sbjct: 2244 cgcgccgtccacctccgccgg 2224
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>gb|AC125196.4| Mus musculus BAC clone RP23-248M23 from chromosome 19, complete
             sequence
          Length = 196591

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 192   tctccacccctacctccaccc 212
             |||||||||||||||||||||
Sbjct: 45111 tctccacccctacctccaccc 45091
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 153     cgatggctgcagcggcgatttccggcggc 181
               ||||||||||| ||||||||||| |||||
Sbjct: 2539164 cgatggctgcatcggcgatttcctgcggc 2539136
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 241     gccttcagcgcgaccaatcgccgca 265
               ||||||||||||||| |||||||||
Sbjct: 3217058 gccttcagcgcgacctatcgccgca 3217082
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 266     tcctccgcctccgcggcccgc 286
               |||||||||||||||||||||
Sbjct: 1173122 tcctccgcctccgcggcccgc 1173142
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 241     gccttcagcgcgaccaatcgccgca 265
               ||||||||||||||| |||||||||
Sbjct: 3450977 gccttcagcgcgacctatcgccgca 3451001



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 287     cgcggggtcgcggccgccgc 306
               ||||||||||||||||||||
Sbjct: 1038567 cgcggggtcgcggccgccgc 1038548
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>gb|AE011907.1| Xanthomonas axonopodis pv. citri str. 306,  section 285 of 469 of the
            complete genome
          Length = 10566

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 241  gccttcagcgcgaccaatcgccgca 265
            ||||||||||||||| |||||||||
Sbjct: 5686 gccttcagcgcgacctatcgccgca 5710
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 57       cgcgccgtccacctccgccgg 77
                |||||||||||||||||||||
Sbjct: 10871864 cgcgccgtccacctccgccgg 10871844



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 40       gccgccgccctagccgccgcgccgtccacctc 71
                ||||||||||  ||||||||||||||| ||||
Sbjct: 34410537 gccgccgcccccgccgccgcgccgtccccctc 34410568
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>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0025P13
          Length = 133242

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 57    cgcgccgtccacctccgccgg 77
             |||||||||||||||||||||
Sbjct: 58880 cgcgccgtccacctccgccgg 58860
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>dbj|AK105791.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H06, full
            insert sequence
          Length = 1830

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 57   cgcgccgtccacctccgccgg 77
            |||||||||||||||||||||
Sbjct: 1356 cgcgccgtccacctccgccgg 1336
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 241     gccttcagcgcgaccaatcgccgca 265
               ||||||||||||||| |||||||||
Sbjct: 3446710 gccttcagcgcgacctatcgccgca 3446734
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>ref|XM_477050.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 465

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 259 cgccgcatcctccgcctccgcggc 282
           |||||||||||||||| |||||||
Sbjct: 150 cgccgcatcctccgccgccgcggc 127
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>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome
          Length = 2314078

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    gcagcggcgatttccggcgg 180
              ||||||||||||||||||||
Sbjct: 306687 gcagcggcgatttccggcgg 306668
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>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete
              sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12
              (WM1.12) genes, complete cds; transposons Ophelia2,
              Angela3s, and XJ3, complete sequence; LRR protein WM1.3
              (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1,
              Jody, Angela, and XJ and Stowaway MITE, complete sequence;
              LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1)
              genes, complete cds; transposons XJ, XA, Angela, and Fred
              and WM1.11 gene, complete sequence; RPM1-like sequence and
              LRR protein WM1.10 (WM1.10) genes, complete cds; and
              transposon XJ, complete sequence
          Length = 198649

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 40     gccgccgccctagccgccgcgccgtcca 67
              ||||||||| ||||||||||| ||||||
Sbjct: 161443 gccgccgccatagccgccgcgacgtcca 161416
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>gb|AC095018.2| Drosophila melanogaster clone BACR24L18, complete sequence
          Length = 163116

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     gccgccgccctagccgccgc 59
              ||||||||||||||||||||
Sbjct: 129525 gccgccgccctagccgccgc 129544
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>ref|XM_424982.1| PREDICTED: Gallus gallus similar to mKIAA1045 protein (LOC427408),
           mRNA
          Length = 1938

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 178 cggccacctcgtcctctccacccc 201
           |||||||| |||||||||||||||
Sbjct: 177 cggccaccacgtcctctccacccc 154
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    ggcccgccgcggggtcgcgg 299
              ||||||||||||||||||||
Sbjct: 792660 ggcccgccgcggggtcgcgg 792641
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>ref|XM_879867.1| PREDICTED: Bos taurus similar to Rho GTPase activating protein 30
            isoform 1, transcript variant 2 (LOC538835), mRNA
          Length = 3645

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  ccacctcgtcctctccaccc 200
            ||||||||||||||||||||
Sbjct: 2229 ccacctcgtcctctccaccc 2210
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>ref|XM_583103.2| PREDICTED: Bos taurus similar to Rho GTPase activating protein 30
            isoform 1, transcript variant 1 (LOC538835), mRNA
          Length = 4287

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  ccacctcgtcctctccaccc 200
            ||||||||||||||||||||
Sbjct: 2229 ccacctcgtcctctccaccc 2210
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>gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0708D12,
              complete sequence
          Length = 172647

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 52     gccgccgcgccgtccacctccgcc 75
              ||||||||||||||| ||||||||
Sbjct: 119538 gccgccgcgccgtccccctccgcc 119515
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>gb|AC118704.17| Mus musculus chromosome 13, clone RP24-114K21, complete sequence
          Length = 197574

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    ctccgcctccgcggcccgcc 287
              ||||||||||||||||||||
Sbjct: 141703 ctccgcctccgcggcccgcc 141684
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>ref|XM_843990.1| PREDICTED: Canis familiaris similar to sin3 associated polypeptide
           p30 (LOC607359), mRNA
          Length = 872

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 283 ccgccgcggggtcgcggccgccgcagtg 310
           |||| |||||| ||||||||||||||||
Sbjct: 30  ccgcggcggggacgcggccgccgcagtg 57
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>gb|BT016031.1| Drosophila melanogaster RE04174 full insert cDNA
          Length = 4872

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   gccgccgccctagccgccgc 59
            ||||||||||||||||||||
Sbjct: 1125 gccgccgccctagccgccgc 1144
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>gb|AC107789.7| Mus musculus chromosome 1, clone RP23-409K18, complete sequence
          Length = 242347

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 189    tcctctccacccctacctccaccc 212
              ||||| ||||||||||||||||||
Sbjct: 160297 tcctccccacccctacctccaccc 160274
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>emb|AL512629.7| Human DNA sequence from clone RP11-564N10 on chromosome 13 Contains the
             5' end of the FGF14 gene for fibroblast growth factor 14,
             a lipoyltransferase (LOC51601) pseudogene and a CpG
             island, complete sequence
          Length = 188696

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   gcaaacaggttcctaaggat 367
             ||||||||||||||||||||
Sbjct: 96018 gcaaacaggttcctaaggat 96037
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      ctttctcgaagccacgagcc 28
              ||||||||||||||||||||
Sbjct: 924254 ctttctcgaagccacgagcc 924235
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>emb|X54453.1|DMABDA D. melanogaster abdominal-A (abd-A) mRNA for homeobox protein
          Length = 1772

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 40  gccgccgccctagccgccgc 59
           ||||||||||||||||||||
Sbjct: 101 gccgccgccctagccgccgc 120
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>gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0011A24, from chromosome 10, complete sequence
          Length = 176832

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     gccgccgccctagccgccgc 59
              ||||||||||||||||||||
Sbjct: 145242 gccgccgccctagccgccgc 145223
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>ref|NM_169733.2| Drosophila melanogaster abdominal A CG10325-RB, transcript variant
           B (abd-A), mRNA
          Length = 3946

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 40  gccgccgccctagccgccgc 59
           ||||||||||||||||||||
Sbjct: 220 gccgccgccctagccgccgc 239
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>ref|NM_057345.2| Drosophila melanogaster abdominal A CG10325-RA, transcript variant A
            (abd-A), mRNA
          Length = 4758

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   gccgccgccctagccgccgc 59
            ||||||||||||||||||||
Sbjct: 1133 gccgccgccctagccgccgc 1152
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>gb|AC096756.3| Homo sapiens BAC clone RP11-526A4 from 4, complete sequence
          Length = 151018

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   caaacaggttcctaaggatt 368
             ||||||||||||||||||||
Sbjct: 30101 caaacaggttcctaaggatt 30120
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 40      gccgccgccctagccgccgc 59
               ||||||||||||||||||||
Sbjct: 4839962 gccgccgccctagccgccgc 4839943
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 259     cgccgcatcctccgcctccgcggc 282
               |||||||||||||||| |||||||
Sbjct: 5598977 cgccgcatcctccgccgccgcggc 5598954
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 52      gccgccgcgccgtccacctccgcc 75
               ||||||||||||||| ||||||||
Sbjct: 6289183 gccgccgcgccgtccccctccgcc 6289160
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>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0468B07
          Length = 169071

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 40    gccgccgccctagccgccgcgccgtccacctc 71
             ||||||||||  ||||||||||||||| ||||
Sbjct: 92881 gccgccgcccccgccgccgcgccgtccccctc 92912
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>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0081K20
          Length = 117287

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 259    cgccgcatcctccgcctccgcggc 282
              |||||||||||||||| |||||||
Sbjct: 112062 cgccgcatcctccgccgccgcggc 112039
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>dbj|AK069286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010J12, full
           insert sequence
          Length = 1387

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 40  gccgccgccctagccgccgcgccgtccacctc 71
           ||||||||||  ||||||||||||||| ||||
Sbjct: 166 gccgccgcccccgccgccgcgccgtccccctc 197
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 164     gcggcgatttccggcggcca 183
               ||||||||||||||||||||
Sbjct: 3443652 gcggcgatttccggcggcca 3443671
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>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0431A02
          Length = 165038

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 259   cgccgcatcctccgcctccgcggc 282
             |||||||||||||||| |||||||
Sbjct: 60669 cgccgcatcctccgccgccgcggc 60646
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>gb|AY107645.1| Zea mays PCO100030 mRNA sequence
          Length = 623

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 264 catcctccgcctccgcggcccgcc 287
           |||||||||||||||| |||||||
Sbjct: 65  catcctccgcctccgccgcccgcc 88
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>gb|AE003715.4| Drosophila melanogaster chromosome 3R, section 53 of 118 of the
             complete sequence
          Length = 228547

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    gccgccgccctagccgccgc 59
             ||||||||||||||||||||
Sbjct: 28169 gccgccgccctagccgccgc 28150
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>gb|AC140241.3| Mus musculus BAC clone RP23-283I15 from chromosome 17, complete
             sequence
          Length = 158575

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 194   tccacccctacctccacccggcgcccac 221
             ||||||||||||||||||| || |||||
Sbjct: 19083 tccacccctacctccaccccgcccccac 19056
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    ttccggcggccacctcgtcc 191
              ||||||||||||||||||||
Sbjct: 301209 ttccggcggccacctcgtcc 301228
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 40      gccgccgccctagccgccgc 59
               ||||||||||||||||||||
Sbjct: 4840783 gccgccgccctagccgccgc 4840764
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>gb|L31790.1|L31790 Drosophila melanogaster (P1 DS00846 (D02)) DNA sequence, complete
             sequence
          Length = 77447

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    gccgccgccctagccgccgc 59
             ||||||||||||||||||||
Sbjct: 47377 gccgccgccctagccgccgc 47396
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>gb|U31961.1|DMU31961 Drosophila melanogaster bithorax complex (BX-C), complete sequence
          Length = 338234

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     gccgccgccctagccgccgc 59
              ||||||||||||||||||||
Sbjct: 155545 gccgccgccctagccgccgc 155564
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>gb|AC163715.5| Mus musculus BAC clone RP23-367H6 from chromosome 17, complete sequence
          Length = 208781

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 194   tccacccctacctccacccggcgcccac 221
             ||||||||||||||||||| || |||||
Sbjct: 48613 tccacccctacctccaccccgcccccac 48586
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>dbj|AB005901.1| Streptomyces kasugaensis DNA, kasugamycin biosynthesis responsible
            gene region, partial and complete cds
          Length = 7581

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 32   gcactcaggccgccgccctagccgccgc 59
            |||| |||||||||||||| ||||||||
Sbjct: 3034 gcacccaggccgccgccctcgccgccgc 3061


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,083,122
Number of Sequences: 3902068
Number of extensions: 3083122
Number of successful extensions: 74681
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73814
Number of HSP's gapped (non-prelim): 867
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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