ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast70c12 |
|---|---|
| Clone Library Name | barley_pub |
>CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 324 Score = 30.4 bits (67), Expect = 1.0 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +3 Query: 276 YMLDVHNKQGDQFEEAKSGTATTHLTQLCLGKNFCPGIRL 395 + +V++K+ D FE K+G A ++ C CP + L Sbjct: 137 FKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTL 176
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Frame = +3 Query: 24 PKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT---VTSVIFDGFGLCSPMQQDLVD- 191 P + +W G+D C T+++G C + +L +T I FG +Q+ ++ Sbjct: 338 PPRLAESWKGNDPC--TNWIGIACSNGNITVISLEKMELTGTISPEFGAIKSLQRIILGI 395 Query: 192 ------------ELPDLALFQASSNNFGGEVP 251 LP+L SSN G+VP Sbjct: 396 NNLTGMIPQELTTLPNLKTLDVSSNKLFGKVP 427
>ZNF92_HUMAN (Q03936) Zinc finger protein 92 (Zinc finger protein HTF12)| Length = 586 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +3 Query: 30 NVTSTWTGHDICATT--SYLGFNCGAPHGQASNLTVTSVIFDG 152 N +S +T H I T SY CG Q+SNLT +I+ G Sbjct: 491 NQSSIFTKHKIIHTEGKSYKCEKCGNAFNQSSNLTARKIIYTG 533
>3MGH_STAAW (P65416) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 27 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 140 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAS (Q6G6X6) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 27 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 140 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAR (Q6GE90) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 27 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 140 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAN (P65415) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 27 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 140 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAM (P65414) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 27 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 140 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAC (Q5HDL2) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 27 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 140 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 24.3 bits (51), Expect(2) = 2.8 Identities = 11/38 (28%), Positives = 18/38 (47%) Frame = +1 Query: 133 HQSFSMALVCVHRCNKILSTSFPILHSSRLPPTTSAAK 246 HQ+ + A H+ + S P H+ LPP+ A+ Sbjct: 1528 HQAAAAAAALHHQSMLLTSPGLPPQHAISLPPSAGGAQ 1565 Score = 23.1 bits (48), Expect(2) = 2.8 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +2 Query: 2 QEHHHLRPQKRNQHLDRPRHLRHDELPRLQ 91 Q HL+ Q+ QHL + +HL + P Q Sbjct: 1498 QAQQHLQ-QQAQQHLQQQQHLAQQQHPHQQ 1526
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 28.9 bits (63), Expect = 3.0 Identities = 22/77 (28%), Positives = 33/77 (42%) Frame = +3 Query: 18 SDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTSVIFDGFGLCSPMQQDLVDEL 197 SDP S+W+ ++ +LG +C A SN V SV F L P ++ L Sbjct: 36 SDPAQSLSSWSDNNDVTPCKWLGVSCDA----TSN--VVSVDLSSFMLVGPF-PSILCHL 88 Query: 198 PDLALFQASSNNFGGEV 248 P L +N+ G + Sbjct: 89 PSLHSLSLYNNSINGSL 105
>VTS1_EMENI (Q5BGC4) Protein vts1| Length = 611 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = +3 Query: 24 PKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTS 137 P NV ++W T+ G GAPH Q S++ + Sbjct: 332 PYNVNASWASMTNTPMTATFGSQLGAPHQQGSDMVANA 369
>NU157_YEAST (P40064) Nucleoporin NUP157 (Nuclear pore protein NUP157)| Length = 1391 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +3 Query: 150 GFGLCSPMQQDLVDELPDLALFQASSNNFGGEVPILTGLSYMYM 281 G G +P Q+ V +PD L Q S+ ++ I L+Y ++ Sbjct: 131 GLGAFTPFQRQQVTNIPDEVLSQVSNTEIKSDMGIFLELNYCWI 174
>V70K_OYMV (P20130) 66 kDa protein| Length = 597 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = +1 Query: 136 QSFSMALV---CVHRCNKILSTSFPILHSSRLPPTTSAAKSLSSPDLA 270 Q MAL+ C H + S SFP H S LPP ++ SSP + Sbjct: 469 QHCQMALMENYCSHFSSPSSSVSFPEDHQSSLPPISTRWVQCSSPSFS 516
>RDRP_ORSVS (Q84133) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -3 Query: 131 HREVTRLSMRCPA 93 HREV RLS+RCPA Sbjct: 949 HREVRRLSLRCPA 961
>RDRP_ORSVC (P89659) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -3 Query: 131 HREVTRLSMRCPA 93 HREV RLS+RCPA Sbjct: 949 HREVRRLSLRCPA 961
>PTPRA_HUMAN (P18433) Receptor-type tyrosine-protein phosphatase alpha precursor| (EC 3.1.3.48) (Protein-tyrosine phosphatase alpha) (R-PTP-alpha) Length = 802 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 315 EEAKSGTATTHLTQLCLGKNFCPGIRLRP 401 EEAK+ T+ LT L + F P I L P Sbjct: 45 EEAKTSNPTSSLTSLSVAPTFSPNITLGP 73
>CHRA_PSEAE (P14285) Chromate transport protein| Length = 416 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -1 Query: 166 EHRPKPSKMTDVTVRLLACPCGAPQLKPR*LVVAQMSW 53 E +PSK TD T + P PQL R L ++W Sbjct: 6 EESYRPSKATDATTEAVPPPMSYPQLFARFLKFGLLAW 43
>CLOCK_DROME (O61735) Circadian locomoter output cycles protein kaput (dCLOCK)| (dPAS1) Length = 1027 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/37 (35%), Positives = 25/37 (67%) Frame = +2 Query: 2 QEHHHLRPQKRNQHLDRPRHLRHDELPRLQLRGTAWT 112 Q HHH++ Q+++Q+ + +H +H +L + QL+ T T Sbjct: 546 QSHHHMQQQQQHQN-QQQQHQQHQQLQQ-QLQHTVGT 580
>RPOB_PROAC (Q6A6K6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1159 Score = 27.3 bits (59), Expect = 8.9 Identities = 21/62 (33%), Positives = 29/62 (46%) Frame = +3 Query: 183 LVDELPDLALFQASSNNFGGEVPILTGLSYMYMLDVHNKQGDQFEEAKSGTATTHLTQLC 362 LVD LF + G P G+ YMYML +H+ D+ A+S + +TQ Sbjct: 986 LVDTDGKATLFDGRT---GEPFPSKVGVGYMYMLKLHHLVDDKI-HARSTGPYSMITQQP 1041 Query: 363 LG 368 LG Sbjct: 1042 LG 1043 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,832,830 Number of Sequences: 219361 Number of extensions: 1090498 Number of successful extensions: 2823 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2731 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2819 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
