ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast70c10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483413.1| Oryza sativa (japonica cultivar-group), mRNA Length = 792 Score = 172 bits (87), Expect = 6e-40 Identities = 181/211 (85%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 194 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 253 |||||||||||||||||||| | ||||||| |||||||||||| ||| || || || Sbjct: 93 cgagaagttcccggcggggagggcgtacgcggcgtgcgaggacctgccgagcctcggcgc 152 Query: 254 cgcgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgc 313 |||||||||| || ||||||| ||||||||||||||| ||| ||||||||||||| || Sbjct: 153 ggcgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgttcgtggcggc 212 Query: 314 gccggcgggggccaacgggtgggtggcctgggcgctcaa-cccacgggcgagggcatggc 372 ||||||||| ||| |||||||||||| |||| ||| || ||||| |||||||| ||||| Sbjct: 213 gccggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggc 272 Query: 373 cggcgcgcaggcgctcgtggcgctcaagggc 403 ||| |||||||||||||||||||||||||| Sbjct: 273 cgggacgcaggcgctcgtggcgctcaagggc 303
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 172 bits (87), Expect = 6e-40 Identities = 181/211 (85%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 194 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 253 |||||||||||||||||||| | ||||||| |||||||||||| ||| || || || Sbjct: 26079482 cgagaagttcccggcggggagggcgtacgcggcgtgcgaggacctgccgagcctcggcgc 26079541 Query: 254 cgcgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgc 313 |||||||||| || ||||||| ||||||||||||||| ||| ||||||||||||| || Sbjct: 26079542 ggcgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgttcgtggcggc 26079601 Query: 314 gccggcgggggccaacgggtgggtggcctgggcgctcaa-cccacgggcgagggcatggc 372 ||||||||| ||| |||||||||||| |||| ||| || ||||| |||||||| ||||| Sbjct: 26079602 gccggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggc 26079661 Query: 373 cggcgcgcaggcgctcgtggcgctcaagggc 403 ||| |||||||||||||||||||||||||| Sbjct: 26079662 cgggacgcaggcgctcgtggcgctcaagggc 26079692 Score = 63.9 bits (32), Expect = 4e-07 Identities = 84/100 (84%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 298 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaaccc-a 356 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 26067143 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 26067084 Query: 357 cgggcgagggcatggccggcgcgcaggcgctcgtggcgct 396 | |||| || ||||||||| ||||||||||||| ||||| Sbjct: 26067083 ccggcggcgggatggccggcacgcaggcgctcgtcgcgct 26067044
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 172 bits (87), Expect = 6e-40 Identities = 181/211 (85%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 194 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 253 |||||||||||||||||||| | ||||||| |||||||||||| ||| || || || Sbjct: 23413 cgagaagttcccggcggggagggcgtacgcggcgtgcgaggacctgccgagcctcggcgc 23472 Query: 254 cgcgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgc 313 |||||||||| || ||||||| ||||||||||||||| ||| ||||||||||||| || Sbjct: 23473 ggcgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgttcgtggcggc 23532 Query: 314 gccggcgggggccaacgggtgggtggcctgggcgctcaa-cccacgggcgagggcatggc 372 ||||||||| ||| |||||||||||| |||| ||| || ||||| |||||||| ||||| Sbjct: 23533 gccggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggc 23592 Query: 373 cggcgcgcaggcgctcgtggcgctcaagggc 403 ||| |||||||||||||||||||||||||| Sbjct: 23593 cgggacgcaggcgctcgtggcgctcaagggc 23623 Score = 63.9 bits (32), Expect = 4e-07 Identities = 84/100 (84%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 298 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaaccc-a 356 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 11074 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 11015 Query: 357 cgggcgagggcatggccggcgcgcaggcgctcgtggcgct 396 | |||| || ||||||||| ||||||||||||| ||||| Sbjct: 11014 ccggcggcgggatggccggcacgcaggcgctcgtcgcgct 10975
>gb|AY108865.1| Zea mays PCO075691 mRNA sequence Length = 425 Score = 151 bits (76), Expect = 2e-33 Identities = 173/204 (84%), Gaps = 1/204 (0%) Strand = Plus / Plus Query: 194 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 253 ||||||||||||||||||| ||||||| |||||||||||| ||| ||||||| || Sbjct: 160 cgagaagttcccggcggggcgtgcgtacgcgtcgtgcgaggacctgccgaagctgggcgc 219 Query: 254 cgcgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgc 313 ||||||||||||| ||||||| ||||||| ||||| ||| ||||||||||||| || Sbjct: 220 gtcgctgcactggacgtacgacgcgtccaagagctccctgtcggtggcgttcgtggcggc 279 Query: 314 gccggcgggggccaacgggtgggtggcctgggcgctcaaccc-acgggcgagggcatggc 372 ||| |||| ||| |||||||||||| |||| || ||||| ||||||||||||||||| Sbjct: 280 gcccgcggcggcgggcgggtgggtggcgtggggcctgaaccctacgggcgagggcatggc 339 Query: 373 cggcgcgcaggcgctcgtggcgct 396 ||||||||||||||| |||||||| Sbjct: 340 cggcgcgcaggcgctggtggcgct 363 Score = 46.1 bits (23), Expect = 0.088 Identities = 41/47 (87%) Strand = Plus / Plus Query: 96 gcctccacgatgccgcgccacatcgcgctgctgttgctcctgctcct 142 |||||||| ||||||||||| |||||||||| ||| ||||||||| Sbjct: 65 gcctccacaatgccgcgccatctcgcgctgctcctgcccctgctcct 111
>ref|XM_483411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1418 Score = 63.9 bits (32), Expect = 4e-07 Identities = 84/100 (84%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 298 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaaccc-a 356 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 256 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 315 Query: 357 cgggcgagggcatggccggcgcgcaggcgctcgtggcgct 396 | |||| || ||||||||| ||||||||||||| ||||| Sbjct: 316 ccggcggcgggatggccggcacgcaggcgctcgtcgcgct 355
>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1186_G01 Length = 112077 Score = 63.9 bits (32), Expect = 4e-07 Identities = 84/100 (84%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 298 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaaccc-a 356 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 102704 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 102645 Query: 357 cgggcgagggcatggccggcgcgcaggcgctcgtggcgct 396 | |||| || ||||||||| ||||||||||||| ||||| Sbjct: 102644 ccggcggcgggatggccggcacgcaggcgctcgtcgcgct 102605
>dbj|AK058714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D11, full insert sequence Length = 1418 Score = 63.9 bits (32), Expect = 4e-07 Identities = 84/100 (84%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 298 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaaccc-a 356 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 256 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 315 Query: 357 cgggcgagggcatggccggcgcgcaggcgctcgtggcgct 396 | |||| || ||||||||| ||||||||||||| ||||| Sbjct: 316 ccggcggcgggatggccggcacgcaggcgctcgtcgcgct 355
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0019D02, complete sequence Length = 154692 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 194 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 253 |||||||||||||||||||| || ||||| | ||||| ||||| ||| ||| || || Sbjct: 150058 cgagaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcgc 150117 Query: 254 cgcgctgcactggacctacgacg 276 ||||||||||||||||||||| Sbjct: 150118 gacgctgcactggacctacgacg 150140 Score = 48.1 bits (24), Expect = 0.022 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand = Plus / Plus Query: 329 cgggtgggtggcctgggcgctcaaccc-acgggcgagggcatggccggcgcgcaggcgct 387 |||||||||| | |||||| ||||||| || ||||| |||||| |||||||||||||| Sbjct: 150199 cgggtgggtgtcgtgggcgatcaaccccaccggcgacggcatgaagggcgcgcaggcgct 150258 Query: 388 cgtggcgctcaagggc 403 ||| || |||||||| Sbjct: 150259 cgtcgccttcaagggc 150274 Score = 44.1 bits (22), Expect = 0.35 Identities = 53/62 (85%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 330 gggtgggtggcctgggcgctcaaccca-cgggcgagggcatggccggcgcgcaggcgctc 388 ||||||||||| |||| ||||||||| | || || || |||||||| |||||||||||| Sbjct: 140717 gggtgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctc 140658 Query: 389 gt 390 || Sbjct: 140657 gt 140656
>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBb0004A05, complete sequence Length = 157913 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 194 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 253 |||||||||||||||||||| || ||||| | ||||| ||||| ||| ||| || || Sbjct: 34732 cgagaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcgc 34791 Query: 254 cgcgctgcactggacctacgacg 276 ||||||||||||||||||||| Sbjct: 34792 gacgctgcactggacctacgacg 34814 Score = 48.1 bits (24), Expect = 0.022 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand = Plus / Plus Query: 329 cgggtgggtggcctgggcgctcaaccc-acgggcgagggcatggccggcgcgcaggcgct 387 |||||||||| | |||||| ||||||| || ||||| |||||| |||||||||||||| Sbjct: 34873 cgggtgggtgtcgtgggcgatcaaccccaccggcgacggcatgaagggcgcgcaggcgct 34932 Query: 388 cgtggcgctcaagggc 403 ||| || |||||||| Sbjct: 34933 cgtcgccttcaagggc 34948 Score = 44.1 bits (22), Expect = 0.35 Identities = 53/62 (85%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 330 gggtgggtggcctgggcgctcaaccca-cgggcgagggcatggccggcgcgcaggcgctc 388 ||||||||||| |||| ||||||||| | || || || |||||||| |||||||||||| Sbjct: 25391 gggtgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctc 25332 Query: 389 gt 390 || Sbjct: 25331 gt 25330
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 194 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 253 |||||||||||||||||||| || ||||| | ||||| ||||| ||| ||| || || Sbjct: 19104773 cgagaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcgc 19104832 Query: 254 cgcgctgcactggacctacgacg 276 ||||||||||||||||||||| Sbjct: 19104833 gacgctgcactggacctacgacg 19104855 Score = 48.1 bits (24), Expect = 0.022 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand = Plus / Plus Query: 329 cgggtgggtggcctgggcgctcaaccc-acgggcgagggcatggccggcgcgcaggcgct 387 |||||||||| | |||||| ||||||| || ||||| |||||| |||||||||||||| Sbjct: 19104914 cgggtgggtgtcgtgggcgatcaaccccaccggcgacggcatgaagggcgcgcaggcgct 19104973 Query: 388 cgtggcgctcaagggc 403 ||| || |||||||| Sbjct: 19104974 cgtcgccttcaagggc 19104989 Score = 44.1 bits (22), Expect = 0.35 Identities = 53/62 (85%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 330 gggtgggtggcctgggcgctcaaccca-cgggcgagggcatggccggcgcgcaggcgctc 388 ||||||||||| |||| ||||||||| | || || || |||||||| |||||||||||| Sbjct: 19095431 gggtgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctc 19095372 Query: 389 gt 390 || Sbjct: 19095371 gt 19095370
>gb|AC008144.5|AC008144 Drosophila melanogaster, chromosome 3R, region 93F-93F, BAC clone BACR04F21, complete sequence Length = 171226 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 gctgctgttgctcctgctcctc 143 |||||||||||||||||||||| Sbjct: 45504 gctgctgttgctcctgctcctc 45483
>gb|AE003737.3| Drosophila melanogaster chromosome 3R, section 75 of 118 of the complete sequence Length = 178251 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 gctgctgttgctcctgctcctc 143 |||||||||||||||||||||| Sbjct: 140880 gctgctgttgctcctgctcctc 140901
>gb|CP000145.1| Rhodobacter sphaeroides 2.4.1 plasmid B, complete sequence Length = 114178 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 363 agggcatggccggcgcgcaggcgct 387 |||||||| |||||||||||||||| Sbjct: 38410 agggcatgaccggcgcgcaggcgct 38434
>ref|XM_361363.1| Magnaporthe grisea 70-15 hypothetical protein (MG03837.4) partial mRNA Length = 2733 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 gctgctgttgctcctgctcct 142 ||||||||||||||||||||| Sbjct: 2407 gctgctgttgctcctgctcct 2387
>tpg|BK003676.1| TPA: TPA_inf: Drosophila melanogaster HDC05200 (HDC05200) gene, complete cds Length = 4612 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 gctgctgttgctcctgctcct 142 ||||||||||||||||||||| Sbjct: 2864 gctgctgttgctcctgctcct 2884
>gb|AC091388.1|AC091388 Drosophila melanogaster, chromosome 2R, region 44C-44D, BAC clone BACR14B02, complete sequence Length = 194036 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 gctgctgttgctcctgctcct 142 ||||||||||||||||||||| Sbjct: 148552 gctgctgttgctcctgctcct 148572
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.4 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 355 cacgggcgagggcatggccggcgcgcaggcgct 387 |||| ||||||||| |||||||||||||||||| Sbjct: 1513576 cacgtgcgagggca-ggccggcgcgcaggcgct 1513607
>gb|AE003837.3| Drosophila melanogaster chromosome 2R, section 13 of 73 of the complete sequence Length = 265215 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 gctgctgttgctcctgctcct 142 ||||||||||||||||||||| Sbjct: 114109 gctgctgttgctcctgctcct 114129
>gb|AC006421.1|AC006421 Drosophila melanogaster, chromosome 2R, region 44C1-44C5, P1 clones DS08614 and DS00667, complete sequence Length = 100575 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 gctgctgttgctcctgctcct 142 ||||||||||||||||||||| Sbjct: 63497 gctgctgttgctcctgctcct 63517
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 cgatgccgcgccacatcgcgc 123 ||||||||||||||||||||| Sbjct: 3201171 cgatgccgcgccacatcgcgc 3201151
>emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chromosome 2, complete sequence Length = 226251 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 gctgctgttgctcctgctcct 142 ||||||||||||||||||||| Sbjct: 149362 gctgctgttgctcctgctcct 149342 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 gctgctgttgctcctgctcct 142 ||||||||||||||||||||| Sbjct: 149227 gctgctgttgctcctgctcct 149207
>gb|AC101660.25| Mus musculus chromosome 15, clone RP23-4I22, complete sequence Length = 188464 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 acaagtcctcactcaccactg 68 ||||||||||||||||||||| Sbjct: 51172 acaagtcctcactcaccactg 51192
>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004O15 map near R3342S, complete sequence Length = 140142 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgctgctgttgctcctgctc 140 |||||||||||||||||||| Sbjct: 104988 cgctgctgttgctcctgctc 105007
>gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0059H21 map R3342S, complete sequence Length = 133790 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgctgctgttgctcctgctc 140 |||||||||||||||||||| Sbjct: 87843 cgctgctgttgctcctgctc 87862
>gb|AC154623.2| Mus musculus BAC clone RP23-327K7 from chromosome 13, complete sequence Length = 190884 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctgctgttgctcctgctcct 142 |||||||||||||||||||| Sbjct: 105720 ctgctgttgctcctgctcct 105701
>gb|AC165278.4| Mus musculus chromosome 15, clone RP23-250O18, complete sequence Length = 187758 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctgctgttgctcctgctcct 142 |||||||||||||||||||| Sbjct: 135283 ctgctgttgctcctgctcct 135264
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggcatggccggcgcgcaggc 384 |||||||||||||||||||| Sbjct: 3952532 ggcatggccggcgcgcaggc 3952551
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctgctgttgctcctgctcct 142 |||||||||||||||||||| Sbjct: 34133895 ctgctgttgctcctgctcct 34133914
>gb|AC131316.8| Mus musculus chromosome 1, clone RP23-302H1, complete sequence Length = 237076 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 tgctgttgctcctgctcctc 143 |||||||||||||||||||| Sbjct: 203258 tgctgttgctcctgctcctc 203277
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 gccggcgcgcaggcgctcgt 390 |||||||||||||||||||| Sbjct: 41472 gccggcgcgcaggcgctcgt 41491
>ref|XM_846699.1| PREDICTED: Canis familiaris similar to prostate tumor over expressed gene 1 (predicted) (LOC483946), mRNA Length = 540 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 cgcgctgctgttgctcctgctcct 142 |||||||||| ||||||||||||| Sbjct: 526 cgcgctgctgctgctcctgctcct 503
>emb|AL929444.6| Human DNA sequence from clone RP11-359B3 on chromosome 10 Contains a ribosomal protein S27 (metallopanstimulin 1) (MPS1, MPS-1) (RPS27) pseudogene, complete sequence Length = 50865 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gggggccaacgggtgggtggcctg 343 |||||||||| ||||||||||||| Sbjct: 12070 gggggccaacaggtgggtggcctg 12047
>emb|AL512428.13| Human DNA sequence from clone RP11-373L11 on chromosome 6 Contains the 3' end of the C6orf32 gene for chromosome 6 open reading frame 32 (PL48, DIFF40, DIFF48) and a CpG island, complete sequence Length = 70800 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tgctgttgctcctgctcctc 143 |||||||||||||||||||| Sbjct: 61138 tgctgttgctcctgctcctc 61119
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cggcgcgcaggcgctcgtgg 392 |||||||||||||||||||| Sbjct: 169566 cggcgcgcaggcgctcgtgg 169585
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 gctggcgttcgtggccgcgc 315 |||||||||||||||||||| Sbjct: 95987 gctggcgttcgtggccgcgc 96006
>gb|AF448526.1| Mytilus galloprovincialis precollagen-D mRNA, complete cds Length = 2848 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctgctgttgctcctgctcct 142 |||||||||||||||||||| Sbjct: 2130 ctgctgttgctcctgctcct 2111
>gb|AE011626.1| Xanthomonas axonopodis pv. citri str. 306, section 4 of 469 of the complete genome Length = 11366 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 gccggcgcgcaggcgctcgt 390 |||||||||||||||||||| Sbjct: 7816 gccggcgcgcaggcgctcgt 7835
>gb|AC068556.10| Homo sapiens chromosome 10 clone RP11-415G6, complete sequence Length = 182913 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 gggggccaacgggtgggtggcctg 343 |||||||||| ||||||||||||| Sbjct: 135290 gggggccaacaggtgggtggcctg 135313
>gb|AC068060.5| Homo sapiens chromosome 10 clone RP11-359B3, complete sequence Length = 182912 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gggggccaacgggtgggtggcctg 343 |||||||||| ||||||||||||| Sbjct: 47618 gggggccaacaggtgggtggcctg 47595
>ref|NM_078688.2| Drosophila melanogaster domeless CG14226-RA (dome), mRNA Length = 4877 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 tcgcgctgctgttgctcctgctcc 141 |||||||||||||||| ||||||| Sbjct: 3716 tcgcgctgctgttgctgctgctcc 3693
>gb|DQ355953.1| Oryza sativa (indica cultivar-group) cultivar Teqing receptor kinase (TRKd) pseudogene, complete sequence; and receptor kinase TRKa (TRKa), receptor kinase TRKe (TRKe), and receptor kinase TRKb (TRKb) genes, complete cds Length = 33301 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cgctgctgttgctcctgctc 140 |||||||||||||||||||| Sbjct: 25112 cgctgctgttgctcctgctc 25093
>gb|AY075427.1| Drosophila melanogaster LD46805 full length cDNA Length = 4814 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 tcgcgctgctgttgctcctgctcc 141 |||||||||||||||| ||||||| Sbjct: 3637 tcgcgctgctgttgctgctgctcc 3614
>gb|AC099011.1| Drosophila melanogaster, chromosome 2L, region 24C-24D, BAC clone BACR22M14, complete sequence Length = 173380 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctgctgttgctcctgctcct 142 |||||||||||||||||||| Sbjct: 114809 ctgctgttgctcctgctcct 114828
>gb|AC010671.8|AC010671 Drosophila melanogaster, chromosome X, region 18E-18F, BAC clone BACR33M08, complete sequence Length = 180263 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 tcgcgctgctgttgctcctgctcc 141 |||||||||||||||| ||||||| Sbjct: 74221 tcgcgctgctgttgctgctgctcc 74244
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cgctgctgttgctcctgctc 140 |||||||||||||||||||| Sbjct: 27757829 cgctgctgttgctcctgctc 27757810 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cgctgctgttgctcctgctc 140 |||||||||||||||||||| Sbjct: 27616985 cgctgctgttgctcctgctc 27616966
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctgctgttgctcctgctcct 142 |||||||||||||||||||| Sbjct: 34224367 ctgctgttgctcctgctcct 34224386
>gb|AC008003.8|AC008003 Drosophila melanogaster, chromosome 2L, region 24D-24D, BAC clone BACR48D02, complete sequence Length = 181728 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctgctgttgctcctgctcct 142 |||||||||||||||||||| Sbjct: 29463 ctgctgttgctcctgctcct 29482
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence Length = 163828 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctgctgttgctcctgctcct 142 |||||||||||||||||||| Sbjct: 97707 ctgctgttgctcctgctcct 97726
>dbj|AK100155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019E12, full insert sequence Length = 1603 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctgctgttgctcctgctcct 142 |||||||||||||||||||| Sbjct: 493 ctgctgttgctcctgctcct 474
>gb|AE003578.3| Drosophila melanogaster chromosome 2L, section 13 of 83 of the complete sequence Length = 295211 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctgctgttgctcctgctcct 142 |||||||||||||||||||| Sbjct: 245374 ctgctgttgctcctgctcct 245393
>gb|AE003512.3| Drosophila melanogaster chromosome X, section 64 of 74 of the complete sequence Length = 346474 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 tcgcgctgctgttgctcctgctcc 141 |||||||||||||||| ||||||| Sbjct: 324134 tcgcgctgctgttgctgctgctcc 324157
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 gcatggccggcgcgcaggcgctcg 389 ||||||||||||| |||||||||| Sbjct: 3557991 gcatggccggcgcccaggcgctcg 3557968
>gb|AC004279.1|AC004279 Drosophila melanogaster DNA sequence (P1 DS06502 (D146)), complete sequence Length = 85338 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctgctgttgctcctgctcct 142 |||||||||||||||||||| Sbjct: 61765 ctgctgttgctcctgctcct 61784
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cgctgctgttgctcctgctc 140 |||||||||||||||||||| Sbjct: 27781817 cgctgctgttgctcctgctc 27781798 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cgctgctgttgctcctgctc 140 |||||||||||||||||||| Sbjct: 27640973 cgctgctgttgctcctgctc 27640954
>gb|AY147847.1| Drosophila melanogaster cytokine receptor domeless (dome) mRNA, complete cds Length = 4805 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 tcgcgctgctgttgctcctgctcc 141 |||||||||||||||| ||||||| Sbjct: 3648 tcgcgctgctgttgctgctgctcc 3625
>emb|AJ420377.1|DME420377 Drosophila melanogaster mRNA for putative interleukine JAK/STAT receptor (dome gene) Length = 4830 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 tcgcgctgctgttgctcctgctcc 141 |||||||||||||||| ||||||| Sbjct: 3648 tcgcgctgctgttgctgctgctcc 3625
>dbj|AB032799.1| Chromobacterium violaceum violacein biosynthetic gene cluster (vio A, vio B, vio C, vio D), complete cds Length = 9077 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 gcatggccggcgcgcaggcgctcg 389 ||||||||||||| |||||||||| Sbjct: 8849 gcatggccggcgcccaggcgctcg 8872 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,799,760 Number of Sequences: 3902068 Number of extensions: 1799760 Number of successful extensions: 52972 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 52073 Number of HSP's gapped (non-prelim): 882 length of query: 406 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 384 effective length of database: 17,147,199,772 effective search space: 6584524712448 effective search space used: 6584524712448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
