ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast70c06 |
|---|---|
| Clone Library Name | barley_pub |
>XRCC1_RAT (Q9ESZ0) DNA-repair protein XRCC1 (X-ray repair cross-complementing| protein 1) Length = 631 Score = 58.5 bits (140), Expect = 7e-09 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 8/146 (5%) Frame = +1 Query: 25 ELGGTRARRQ*PKPQVSTSRNLDLNL--------PLIQPFRAERFRIPAIMPEPSSDPGN 180 ++GG+ ++ Q P R LDL L P P +R ++P P++ P + Sbjct: 232 KVGGSSSKLQEPP---KGKRKLDLGLEDKKPPSKPSAGPPAPKRPKLPVPSRTPAATPAS 288 Query: 181 GKGKRSLPSWMXXXXXXXXXXXXXXXXXXHXXXXXXXXXXXXDFSKLLDGVVFVLSGFVN 360 ++++P + K+L GVV VLSGF N Sbjct: 289 TPAQKAVPG----------------KPRGEGTEPRGARAGPQELGKILQGVVVVLSGFQN 332 Query: 361 PERGRLRSQALDMGAVYRPDWSDDCT 438 P R LR +AL++GA YRPDW+ D T Sbjct: 333 PFRSELRDKALELGAKYRPDWTPDST 358
>XRCC1_MOUSE (Q60596) DNA-repair protein XRCC1 (X-ray repair cross-complementing| protein 1) Length = 631 Score = 58.2 bits (139), Expect = 9e-09 Identities = 26/44 (59%), Positives = 32/44 (72%) Frame = +1 Query: 307 DFSKLLDGVVFVLSGFVNPERGRLRSQALDMGAVYRPDWSDDCT 438 + K+L GVV VLSGF NP R LR +AL++GA YRPDW+ D T Sbjct: 315 ELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDST 358
>XRCC1_CRIGR (O54935) DNA-repair protein XRCC1 (X-ray repair cross-complementing| protein 1) Length = 633 Score = 58.2 bits (139), Expect = 9e-09 Identities = 26/44 (59%), Positives = 32/44 (72%) Frame = +1 Query: 307 DFSKLLDGVVFVLSGFVNPERGRLRSQALDMGAVYRPDWSDDCT 438 + K+L GVV VLSGF NP R LR +AL++GA YRPDW+ D T Sbjct: 316 ELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDST 359
>XRCC1_HUMAN (P18887) DNA-repair protein XRCC1 (X-ray repair cross-complementing| protein 1) Length = 633 Score = 57.8 bits (138), Expect = 1e-08 Identities = 26/44 (59%), Positives = 32/44 (72%) Frame = +1 Query: 307 DFSKLLDGVVFVLSGFVNPERGRLRSQALDMGAVYRPDWSDDCT 438 + K+L GVV VLSGF NP R LR +AL++GA YRPDW+ D T Sbjct: 315 ELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDST 358
>SPD1_NEPCL (P19837) Spidroin 1 (Dragline silk fibroin 1) (Fragment)| Length = 747 Score = 30.4 bits (67), Expect = 2.0 Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 5/73 (6%) Frame = +3 Query: 213 GXXXXXXXXXXAESGQEEARGGGPREGSNGAGFLQTLGRGGL-----CAVRVREP*EGQA 377 G +GQE RG G +G G Q GRGGL A GQ Sbjct: 490 GQGAGAAAAAAVGAGQEGIRGQGAGQGGYGGLGSQGSGRGGLGGQGAGAAAAAAGGAGQG 549 Query: 378 ALPGAGHGGGVPA 416 L G G G G A Sbjct: 550 GLGGQGAGQGAGA 562 Score = 28.9 bits (63), Expect = 5.8 Identities = 20/51 (39%), Positives = 23/51 (45%) Frame = +3 Query: 252 SGQEEARGGGPREGSNGAGFLQTLGRGGLCAVRVREP*EGQAALPGAGHGG 404 +G A GG +G G Q +GRGGL G AA GAG GG Sbjct: 590 AGAAAAAAGGAGQGGYGGLGGQGVGRGGLGGQGA-----GAAAAGGAGQGG 635
>BCHZ_ERYLO (Q9KWI8) Chlorophyllide reductase subunit Z (EC 1.18.-.-) (Chlorin| reductase subunit Z) Length = 494 Score = 30.4 bits (67), Expect = 2.0 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 169 PNSVPALWRGYGTAQLGKAGSTAGSNRGFGRLIPEVSA 56 P+ +P + G G +LGK G+ A R + L PE+ A Sbjct: 53 PHELPIVVTGLGEEELGKTGTEAAMKRAWQTLDPELPA 90
>PROC_CORML (P0C1E5) Pyrroline-5-carboxylate reductase (EC 1.5.1.2) (P5CR) (P5C| reductase) Length = 270 Score = 30.4 bits (67), Expect = 2.0 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = -2 Query: 416 GRYTAPMSSAWERSLPLSGFTNPDSTKTTPSKSLEKSGAVGALSRAASAC 267 G T + E S +G ++P T + LE+SG GA RAA AC Sbjct: 211 GAATMMKETGKEPSELRAGVSSPAGTTVAAIRELEESGIRGAFYRAAQAC 260
>PROC_CORGL (P0C1E4) Pyrroline-5-carboxylate reductase (EC 1.5.1.2) (P5CR) (P5C| reductase) Length = 270 Score = 30.4 bits (67), Expect = 2.0 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = -2 Query: 416 GRYTAPMSSAWERSLPLSGFTNPDSTKTTPSKSLEKSGAVGALSRAASAC 267 G T + E S +G ++P T + LE+SG GA RAA AC Sbjct: 211 GAATMMKETGKEPSELRAGVSSPAGTTVAAIRELEESGIRGAFYRAAQAC 260
>LONM_HUMAN (P36776) Lon protease homolog, mitochondrial precursor (EC| 3.4.21.-) (Lon protease-like protein) (LONP) (LONHs) Length = 959 Score = 30.0 bits (66), Expect = 2.6 Identities = 23/66 (34%), Positives = 27/66 (40%) Frame = +3 Query: 135 PYPRHNAGTEFGSGQWQGQEEPPFLDGXXXXXXXXXXAESGQEEARGGGPREGSNGAGFL 314 P+ G G GQW+G E G A SG E+A GG EG+ GAG Sbjct: 51 PWALWGRGPAIG-GQWRGFWEASSRGGG---------AFSGGEDASEGGAEEGAGGAGGS 100 Query: 315 QTLGRG 332 G G Sbjct: 101 AGAGEG 106
>DIDO1_MOUSE (Q8C9B9) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (Fragments) Length = 1956 Score = 30.0 bits (66), Expect = 2.6 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +1 Query: 10 PWWTAELGGTRARRQ*PKPQVSTSRNLDLNLPLIQPFRAE-RFRIPAIMPEP 162 PW +A L GT AR+ P P + S+ L + ++ R +PA P P Sbjct: 599 PWPSATLSGTSARQAGPTPMTAASKKLPGSAAVVGVTRKPMSANVPAASPAP 650
>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)| Length = 627 Score = 29.6 bits (65), Expect = 3.4 Identities = 29/89 (32%), Positives = 34/89 (38%), Gaps = 1/89 (1%) Frame = +3 Query: 141 PRHNAGTEFGSGQWQGQEEPPFLDGXXXXXXXXXXAESGQEEARGGGP-REGSNGAGFLQ 317 PR +G GQ QG P G AESGQ+ G GP ++G G G Q Sbjct: 91 PRQQGPGGYGQGQ-QGPSGP----GSAAAASAAASAESGQQGPGGYGPGQQGPGGYGPGQ 145 Query: 318 TLGRGGLCAVRVREP*EGQAALPGAGHGG 404 G GG + G AA A G Sbjct: 146 Q-GPGGYGPGQQGPSGPGSAAAAAAAASG 173
>CCG8_HUMAN (Q8WXS5) Voltage-dependent calcium channel gamma-8 subunit| (Neuronal voltage-gated calcium channel gamma-8 subunit) Length = 425 Score = 29.6 bits (65), Expect = 3.4 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -3 Query: 361 GSRTLTAQRPPRPRVWRNPAPLEPSRG 281 G T+T RPP P R+PAP P+ G Sbjct: 378 GGVTVTVTRPPAPPAPRHPAPSAPAPG 404
>HYR1_CANAL (P46591) Hyphally-regulated protein precursor| Length = 937 Score = 29.6 bits (65), Expect = 3.4 Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 1/88 (1%) Frame = +3 Query: 147 HNAGTEFGSGQWQGQEEPPFLDGXXXXXXXXXXAESGQEEARGGGPREGSN-GAGFLQTL 323 H + GSG G G ++SG E G EGSN GAG Sbjct: 695 HGSNEGSGSGSGSGSNNG---SGSGSQSGSGSGSQSGSESGSNSGSNEGSNPGAGNGSNE 751 Query: 324 GRGGLCAVRVREP*EGQAALPGAGHGGG 407 G G + E GQ + P G G G Sbjct: 752 G-SGQGSGNGSEAGSGQGSGPNNGSGSG 778
>COAT_SOUV3 (Q04542) Capsid protein (Coat protein)| Length = 546 Score = 29.3 bits (64), Expect = 4.4 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 115 AGSTAGSNRGFGRLIPEVSATDAAPWFPRAQPST 14 A +A G G+L+PEV+ D P P A P+T Sbjct: 8 APQSADGASGAGQLVPEVNTADPLPMEPVAGPTT 41
>IE68_EHV4 (P18346) Immediate-early protein IE68 (ORF4) (Fragment)| Length = 273 Score = 29.3 bits (64), Expect = 4.4 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 9/55 (16%) Frame = -1 Query: 147 GGDTEPLSSERLDQRQVQIEVSGG-*YLRFRL-LTPRPGSPELSR-------PPW 10 GG+ P SS+R+D +V + GG + + L L+PR P LSR PPW Sbjct: 25 GGNPSPRSSQRIDSVRVPARLPGGSDHPEYGLPLSPRSLRPYLSRGPGAFCAPPW 79
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein| kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 29.3 bits (64), Expect = 4.4 Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 8/105 (7%) Frame = +3 Query: 21 G*ARGNQGAASVAETSGINLPKPRFEPAVDP--------AFPS*AVPYPRHNAGTEFGSG 176 G A + A A +G+ +P R PA P A P+ +VP P GT + Sbjct: 2200 GWAAPGEARAMTAPRAGVGMP--RLPPAPGPLSTTVIPGAAPTLSVPTPDGALGTARRNQ 2257 Query: 177 QWQGQEEPPFLDGXXXXXXXXXXAESGQEEARGGGPREGSNGAGF 311 W G PP A G GG R GS A F Sbjct: 2258 VWFGLRVPP-------------TACCGHSTQPRGGQRVGSKTASF 2289
>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID| domain-containing protein 1B) (Osa homolog 2) (hOsa2) (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated factor 250b) (BAF250B) Length = 2236 Score = 29.3 bits (64), Expect = 4.4 Identities = 19/45 (42%), Positives = 19/45 (42%) Frame = +3 Query: 273 GGGPREGSNGAGFLQTLGRGGLCAVRVREP*EGQAALPGAGHGGG 407 GGG GS G G G GG A V AA G G GGG Sbjct: 313 GGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGG 357
>NOLA1_BRARE (Q7ZVE0) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar| protein family A member 1) Length = 226 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +2 Query: 2 GDSHGGRLSSGEPGRGVSSRNLRYQPPE 85 G GG G GRG +RN Y PPE Sbjct: 35 GGGRGGGFGGGRGGRGGFNRNQDYGPPE 62
>Y2850_MYCTU (O05809) Hypothetical protein Rv2850c/MT2916| Length = 629 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = +1 Query: 337 FVLSGFVNPERGRLRSQALD 396 FVL G +NPE G LR Q LD Sbjct: 145 FVLIGTMNPEEGELRPQLLD 164
>DDI1_YEAST (P40087) DNA damage-inducible protein DDI1 (v-SNARE-master 1)| Length = 428 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/37 (40%), Positives = 17/37 (45%) Frame = -3 Query: 175 PDPNSVPALWRGYGTAQLGKAGSTAGSNRGFGRLIPE 65 P P +VPAL G STAG+ GR PE Sbjct: 356 PQPGAVPALAPRTGMGPTPTGRSTAGATTATGRTFPE 392
>NOLA1_RAT (Q6AYA1) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar| protein family A member 1) Length = 226 Score = 28.5 bits (62), Expect = 7.6 Identities = 21/55 (38%), Positives = 22/55 (40%) Frame = +3 Query: 255 GQEEARGGGPREGSNGAGFLQTLGRGGLCAVRVREP*EGQAALPGAGHGGGVPAR 419 G+ RGGG R G G GF GRGG G G G GGG R Sbjct: 183 GRGGGRGGGGRGGGRGGGFRG--GRGG-----------GGGFRGGRGGGGGFRGR 224
>Y911_METJA (Q58321) Magnesium-chelatase subunit chlI homolog| Length = 365 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +1 Query: 337 FVLSGFVNPERGRLRSQALD 396 F+L G +NPE G LR Q LD Sbjct: 179 FILVGTMNPEEGELRPQILD 198
>Y1277_CHLTE (Q8KCY0) UPF0251 protein CT1277| Length = 197 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/45 (37%), Positives = 18/45 (40%) Frame = +3 Query: 273 GGGPREGSNGAGFLQTLGRGGLCAVRVREP*EGQAALPGAGHGGG 407 GGG R G GF L RG P G+ G GHG G Sbjct: 142 GGGRRGGGKCRGFRSGLDRG---------PGHGEGRCQGEGHGNG 177
>JPH4_HUMAN (Q96JJ6) Junctophilin-4 (Junctophilin-like 1 protein)| Length = 628 Score = 28.5 bits (62), Expect = 7.6 Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Frame = -1 Query: 168 RTRFRHYGGDTEPLSSERLDQRQVQIEVSGG*YLRFRLLTPRPGSPEL------SRPPWE 7 R R G DTEPL D+ + +G LTP GSPEL SR PW Sbjct: 426 RPRQDSEGSDTEPL-----DEDSPGVYENG--------LTPSEGSPELPSSPASSRQPWR 472 Query: 6 SP 1 P Sbjct: 473 PP 474
>ECM1_RAT (Q62894) Extracellular matrix protein 1 precursor (Secretory| component P85) Length = 562 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/17 (70%), Positives = 12/17 (70%) Frame = -3 Query: 352 TLTAQRPPRPRVWRNPA 302 TLT Q PP PR W NPA Sbjct: 156 TLTGQHPPEPRTW-NPA 171 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,065,340 Number of Sequences: 219361 Number of extensions: 1264872 Number of successful extensions: 4955 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4517 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4934 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
