>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 28/97 (28%), Positives = 41/97 (42%)
 Frame = -1

Query: 322  GTAPRRRCAMDASLPRRTA*APSGTTSTMSPCFCPDGMYSTNPDVRHDGIDDAPTTCVPR 143
            G  P  R  M   +PR +   P      +   F P G+    P  +H+ +  A      R
Sbjct: 2501 GIPPHIRRPMSMEMPRPSNNPPLNNPVGLPQHFPPQGL----PVQQHNILGQAFIELRHR 2556

Query: 142  SCDGCGPRSKLPFASSPSVIPSANLQVAHRSRSTSPD 32
            + DG   RS+LPFA+SPS +  +     H +    PD
Sbjct: 2557 APDG---RSRLPFAASPSSVIESPSHPRHGNFLPRPD 2590

>ENO_THEVO (Q979Z9) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 401

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 217 DGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHRSRSTS 38
           D +Y+TNPD    GI+   T  V    +  G  +K   A+S +        V+HRS  T+
Sbjct: 301 DDLYTTNPDRIRKGIELGSTNAVLIKVNQIGTLTKAQEAASLASSAGLKNVVSHRSGETT 360

Query: 37  PD-MADLAI 14
            D +A L++
Sbjct: 361 DDFLAHLSV 369

>Y1903_CORGL (Q6M4B7) Hypothetical RNA methyltransferase Cgl1903/cg2084 (EC|
           2.1.1.-)
          Length = 412

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 2   IGAKDGKVSHVRASAPASMCDLQIGARNHRWAAGE 106
           IG  DG+V  V+   P  + D++I     +WA GE
Sbjct: 27  IGHHDGRVIFVKGGIPGDVVDVEIAQLKKKWARGE 61

>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 322 GTAPRRRCAMDASLPRRTA*APSGTTSTMSPCFCPDGMYSTNPDVRHDGIDDA 164
           GTA R RC+ D++ P  +   P G+    S C          P    DG+D A
Sbjct: 441 GTAGRERCSQDSASPASSTGLPEGSEPESSCC----------PRTPEDGVDSA 483

>ENO_THEAC (Q9HJT1) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 401

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -1

Query: 217 DGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHRSRSTS 38
           D +Y+TNPD    G++   T  V    +  G  S    A + +        V+HRS  T+
Sbjct: 301 DDLYTTNPDRIRKGVEKKSTNAVLIKVNQIGTLSAAREAVAVATFAGMKNIVSHRSGETT 360

Query: 37  PD-MADLAI 14
            D +A L++
Sbjct: 361 DDFLAHLSV 369

>CASL_HUMAN (Q14511) Enhancer of filamentation 1 (HEF1) (CRK-associated|
           substrate-related protein) (CAS-L) (CasL) (p105)
           (Protein NEDD9) (NY-REN-12 antigen)
          Length = 834

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 21/65 (32%), Positives = 27/65 (41%)
 Frame = -1

Query: 226 FCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQVAHRSR 47
           F P    +  PD+R +G+ D P TC         P  K         IP A   VA R +
Sbjct: 243 FPPPMRQAGRPDLRPEGVYDIPPTCTK-------PAGKDLHVKYNCDIPGAAEPVARRHQ 295

Query: 46  STSPD 32
           S SP+
Sbjct: 296 SLSPN 300

>PTPRV_MOUSE (P70289) Receptor-type tyrosine-protein phosphatase V precursor (EC|
           3.1.3.48) (Embryonic stem cell protein-tyrosine
           phosphatase) (ES cell phosphatase)
          Length = 1705

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 252 PEGAYAVRLGNEASIAQRLRGAVPGARYSLTFSAARTCAQAERLNVSA 395
           PEG       NE+S      G VPG+RY L  +  R C Q   + ++A
Sbjct: 79  PEGQQLQAHTNESSF--EFHGLVPGSRYQLELTVLRPCWQNVTITLTA 124

>VLPE_MYCHR (Q49537) Variant surface antigen E precursor (VLPE prolipoprotein)|
          Length = 243

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = -1

Query: 256 SGTTSTMSPCFCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPS 77
           SG  S+ S    PDG +S NP          PTT  P+  +   P +  P  S+PS   +
Sbjct: 81  SGNGSSNSSVSTPDGQHS-NPS--------NPTTSDPKESNPSNPTTSDPKESNPSNPTT 131

Query: 76  ANLQVAHRSRSTSPD 32
           ++ Q ++ S  T+ D
Sbjct: 132 SDGQHSNPSNPTTSD 146

>Y179_TREPA (O83209) Hypothetical protein TP0179|
          Length = 627

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = -1

Query: 397 DADTLSRSACAHVLAALKVRL*RAPGTAPRRRCAMDASLPRRTA*APSGTTSTMSPCFCP 218
           DA T      A  +++++  L +  GT  R+  A  A  P  TA AP GT +  S  FC 
Sbjct: 306 DASTDLLLKIAQEISSIRADLDQLKGTFSRQAGAEPAQAPA-TAPAPEGTEAAYSGFFCD 364

Query: 217 D 215
           D
Sbjct: 365 D 365

>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)|
          Length = 4289

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 300  QRLRGAVPGARYSLTFSAARTCAQAERL 383
            Q+L+G +PGARY +T  + R   ++E L
Sbjct: 3855 QKLQGLIPGARYEVTVVSVRGFEESEPL 3882

>HMX2_MOUSE (P43687) Homeobox protein HMX2 (Homeobox protein Nkx-5.2)|
          Length = 273

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = -1

Query: 229 CFCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRS--KLPFAS 98
           CFCPD      P  +H      P    P+   G GP +  + PF S
Sbjct: 65  CFCPDPHGPKEPSPKHHTPIPFPCLGTPKGSGGAGPAASERTPFLS 110

>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC|
           3.1.3.48) (Embryonic stem cell protein-tyrosine
           phosphatase) (ES cell phosphatase) (Osteotesticular
           protein-tyrosine phosphatase) (OST-PTP)
          Length = 1711

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 252 PEGAYAVRLGNEASIAQRLRGAVPGARYSLTFSAARTCAQAERLNVSA 395
           PEG       NE+       G VPG+RY L  +  R C Q   + ++A
Sbjct: 79  PEGQQLQAHTNESGF--EFHGLVPGSRYQLKLTVLRPCWQNVTITLTA 124

>GNTP_ECOLI (P0AC94) High-affinity gluconate transporter (Gluconate permease 3)|
           (Gnt-III system)
          Length = 447

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 108 GNFERGPQPSQLRGTQVVGASSIPSWRTSGFVEYIPS 218
           GN ER P PS L+  Q V  +++PS+  S  V  IP+
Sbjct: 201 GNLER-PTPSFLKADQPVDMNNLPSFGVSILVPLIPA 236

>GNTP_ECO57 (P0AC95) High-affinity gluconate transporter (Gluconate permease 3)|
           (Gnt-III system)
          Length = 447

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 108 GNFERGPQPSQLRGTQVVGASSIPSWRTSGFVEYIPS 218
           GN ER P PS L+  Q V  +++PS+  S  V  IP+
Sbjct: 201 GNLER-PTPSFLKADQPVDMNNLPSFGVSILVPLIPA 236

>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640|
          Length = 1069

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 19/75 (25%), Positives = 27/75 (36%)
 Frame = -1

Query: 259 PSGTTSTMSPCFCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIP 80
           P+   ++  P F P    ++N     D + +      P    G GPR   PF  SP   P
Sbjct: 12  PNSQQNSGPPNFYPGSQGNSN--ALADNMQNLSLNRPPPMMPGSGPRPPPPFGQSPQPFP 69

Query: 79  SANLQVAHRSRSTSP 35
             +       R  SP
Sbjct: 70  QQSPSYGAPQRGPSP 84

>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 22/97 (22%), Positives = 41/97 (42%)
 Frame = -1

Query: 322  GTAPRRRCAMDASLPRRTA*APSGTTSTMSPCFCPDGMYSTNPDVRHDGIDDAPTTCVPR 143
            G +P+ R ++   +PR    +       +   F P  +    P  +H+ +  A      R
Sbjct: 2509 GVSPQLRRSVSVDMPRPLNNSQMNNPVGLPQHFSPQSL----PVQQHNILGQAYIELRHR 2564

Query: 142  SCDGCGPRSKLPFASSPSVIPSANLQVAHRSRSTSPD 32
            + DG   R +LPF++ P  +  A+  + H +    PD
Sbjct: 2565 APDG---RQRLPFSAPPGSVVEASSNLRHGNFIPRPD 2598

>DNA2_SCHPO (Q9URU2) DNA replication ATP-dependent helicase dna2 (EC 3.6.1.-)|
          Length = 1398

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 196 PDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVI 83
           PD+  D IDD        SCDGC P     F+S  +V+
Sbjct: 332 PDINSDFIDDWDD-----SCDGCTPGELCEFSSEYTVL 364

>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 208 YSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLPFASSPSVIPSANLQV 62
           ++ N D RH G   + T+C        GP +KLP ++  S +  A  Q+
Sbjct: 63  FTNNWDPRHTGFSPSMTSCSKEHRQ--GPATKLPSSNYNSDVEDARFQI 109

>MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronchial)|
           (Tracheobronchial mucin) (TBM) (Major airway
           glycoprotein) (Fragment)
          Length = 1233

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -1

Query: 229 CFCPDGM--YSTNPDVRHDGIDDAPTTCVPRSCDGC-GPRSK 113
           CFCP+GM  +ST+  V           CVP  C  C GP  +
Sbjct: 833 CFCPEGMTLFSTSAQV-----------CVPTGCPRCLGPHGE 863


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,740,051
Number of Sequences: 219361
Number of extensions: 859882
Number of successful extensions: 3338
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3330
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)