Clone Name	bast70c01
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AK066837.1| Oryza sativa (japonica cultivar-group) cDNA clon...	244	2e-61
2	gb|AY108827.1| Zea mays PCO088834 mRNA sequence	208	1e-50
3	emb|AJ431193.1|ZMA431193 Zea mays partial mRNA for putative plas...	200	3e-48
4	emb|AJ431192.1|ZMA431192 Zea mays mRNA for putative plastid ribo...	200	3e-48
5	dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...	176	4e-41
6	dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic D...	176	4e-41
7	dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic D...	176	4e-41
8	emb|AJ431185.1|ZMA431185 Zea mays prpl35-1 gene for putative pla...	157	4e-35
9	emb|AJ431187.1|ZMA431187 Zea mays partial prpl35-1 gene for puta...	157	4e-35
10	emb|AJ431189.1|ZMA431189 Zea mays partial prpl35-3 gene for puta...	149	9e-33
11	emb|AJ431186.1|ZMA431186 Zea mays partial prpl35-1 gene for puta...	149	9e-33
12	emb|AJ431188.1|ZMA431188 Zea mays partial prpl35-2 pseudogene fo...	127	3e-26
13	emb|AJ431191.1|ZMA431191 Zea mays partial prpl35-5 pseudogene fo...	115	1e-22
14	gb|AY112142.1| Zea mays CL10750_2 mRNA sequence	100	8e-18
15	ref|NM_179716.1| Arabidopsis thaliana structural constituent of ...	72	2e-09
16	gb|AY096532.1| Arabidopsis thaliana putative chloroplast ribosom...	72	2e-09
17	gb|AY065235.1| Arabidopsis thaliana putative chloroplast ribosom...	72	2e-09
18	emb|BX819034.1|CNS0A8SW Arabidopsis thaliana Full-length cDNA Co...	72	2e-09
19	emb|BX821936.1|CNS0A89I Arabidopsis thaliana Full-length cDNA Co...	72	2e-09
20	emb|AJ431190.1|ZMA431190 Zea mays partial prpl35-4 gene for puta...	72	2e-09
21	gb|M60449.1|SPIRPL35A Spinach chloroplast ribosomal protein L35 ...	46	0.097
22	gb|AC108734.10| Homo sapiens 3 BAC RP11-259P15 (Roswell Park Can...	42	1.5
23	gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome	42	1.5
24	dbj|D87817.1| Thermus thermophilus DNA for geranylgeranyl diphos...	42	1.5
25	gb|AY587241.1| Hepatitis C virus isolate IstHCVSA15 nonstructura...	40	6.0
26	ref|XM_990445.1| PREDICTED: Mus musculus RIKEN cDNA 8430438M01 g...	40	6.0
27	ref|XM_911119.2| PREDICTED: Mus musculus RIKEN cDNA 8430438M01 g...	40	6.0
28	ref|XM_140320.6| PREDICTED: Mus musculus RIKEN cDNA 8430438M01 g...	40	6.0
29	emb|AL360176.22| Human DNA sequence from clone RP11-124H7 on chr...	40	6.0
30	gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence	40	6.0
31	gb|AY121358.1| Homo sapiens MMP21 protein (MMP21) gene, complete...	40	6.0
32	dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome	40	6.0
33	gb|AC005967.3| Arabidopsis thaliana chromosome 2 clone F27D4 map...	40	6.0
34	gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E15 ma...	40	6.0
35	gb|AC148019.5| Mus musculus BAC clone RP23-12B6 from chromosome ...	40	6.0
36	dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	6.0
37	emb|X87332.1|ATRPL35GE A.thaliana rpl35 gene	40	6.0
38	emb|AJ323697.1|HSA323697 Homo sapiens genomic sequence surroundi...	40	6.0
39	gb|AY111793.1| Zea mays CL19330_1 mRNA sequence	40	6.0
40	gb|AC006212.1|AC006212 Homo sapiens, clone hRPK.14_A_1, complete...	40	6.0
41	gb|AC005944.1|AC005944 Homo sapiens chromosome 19, cosmid F23613...	40	6.0
42	gb|AE015925.1| Chlamydophila caviae GPIC, complete genome	40	6.0
43	gb|AY885252.1| Homo sapiens matrix metalloproteinase 21 (MMP21) ...	40	6.0
44	dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp...	40	6.0

---

>dbj|AK066837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013083N03, full
           insert sequence
          Length = 726

 Score =  244 bits (123), Expect = 2e-61
 Identities = 159/171 (92%)
 Strand = Plus / Plus

                                                                       
Query: 248 ggaaggggtacaagatgaagacgcacaaggcgtcggcgaagcggttcagggtgacgggga 307
           |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ggaaggggtacaagatgaagacccacaaggcgtcggcgaagcggttccgggtgacgggga 320

                                                                       
Query: 308 cggggaagatcgtgcggcgctgcgccgggaagcagcatctgctcagcaagaagaacgcca 367
            ||||||||||||||||||  |||||||||||||||| || ||||||||||||||| |||
Sbjct: 321 gggggaagatcgtgcggcggcgcgccgggaagcagcaccttctcagcaagaagaacacca 380

                                                              
Query: 368 agcgcaggaagaggctctccaagatggtccaagttaaacagagcgactaca 418
           |||||||||||||||| ||||||||| ||||||||||  ||||||||||||
Sbjct: 381 agcgcaggaagaggctatccaagatgatccaagttaacaagagcgactaca 431



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 45 agccatggccatgtcgctctccctcgcgcgc 75
          ||||||||||||||| |||||||||||||||
Sbjct: 40 agccatggccatgtccctctccctcgcgcgc 70

---

>gb|AY108827.1| Zea mays PCO088834 mRNA sequence
          Length = 868

 Score =  208 bits (105), Expect = 1e-50
 Identities = 141/153 (92%)
 Strand = Plus / Plus

                                                                       
Query: 249 gaaggggtacaagatgaagacgcacaaggcgtcggcgaagcggttcagggtgacggggac 308
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 271 gaaggggtacaagatgaagacgcacaaggcgtcggcgaagcggttccgggtgacggggag 330

                                                                       
Query: 309 ggggaagatcgtgcggcgctgcgccgggaagcagcatctgctcagcaagaagaacgccaa 368
           ||| |||||||||||||| |||||||||||||||||  |||||  |||||||||| ||||
Sbjct: 331 gggcaagatcgtgcggcggtgcgccgggaagcagcacttgctcgccaagaagaacaccaa 390

                                            
Query: 369 gcgcaggaagaggctctccaagatggtccaagt 401
           ||||| |||||||||||| |||||||| |||||
Sbjct: 391 gcgcaagaagaggctctcgaagatggtgcaagt 423

---

>emb|AJ431193.1|ZMA431193 Zea mays partial mRNA for putative plastid ribosomal protein L35
           (prpl35-1 gene), cultivar inbred A188
          Length = 621

 Score =  200 bits (101), Expect = 3e-48
 Identities = 140/153 (91%)
 Strand = Plus / Plus

                                                                       
Query: 249 gaaggggtacaagatgaagacgcacaaggcgtcggcgaagcggttcagggtgacggggac 308
           |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 141 gaagggctacaagatgaagacgcacaaggcgtcggcgaagcggttccgggtgacggggag 200

                                                                       
Query: 309 ggggaagatcgtgcggcgctgcgccgggaagcagcatctgctcagcaagaagaacgccaa 368
           ||| |||||||||||||| |||||||||||||||||  |||||  |||||||||| ||||
Sbjct: 201 gggcaagatcgtgcggcggtgcgccgggaagcagcacttgctcgccaagaagaacaccaa 260

                                            
Query: 369 gcgcaggaagaggctctccaagatggtccaagt 401
           ||||| |||||||||||| |||||||| |||||
Sbjct: 261 gcgcaagaagaggctctcgaagatggtgcaagt 293

---

>emb|AJ431192.1|ZMA431192 Zea mays mRNA for putative plastid ribosomal protein L35 (prpl35-1
           gene), cultivar hybrid HD5xHD7
          Length = 833

 Score =  200 bits (101), Expect = 3e-48
 Identities = 140/153 (91%)
 Strand = Plus / Plus

                                                                       
Query: 249 gaaggggtacaagatgaagacgcacaaggcgtcggcgaagcggttcagggtgacggggac 308
           |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 260 gaagggctacaagatgaagacgcacaaggcgtcggcgaagcggttccgggtgacggggag 319

                                                                       
Query: 309 ggggaagatcgtgcggcgctgcgccgggaagcagcatctgctcagcaagaagaacgccaa 368
           ||| |||||||||||||| |||||||||||||||||  |||||  |||||||||| ||||
Sbjct: 320 gggcaagatcgtgcggcggtgcgccgggaagcagcacttgctcgccaagaagaacaccaa 379

                                            
Query: 369 gcgcaggaagaggctctccaagatggtccaagt 401
           ||||| |||||||||||| |||||||| |||||
Sbjct: 380 gcgcaagaagaggctctcgaagatggtgcaagt 412

---

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  176 bits (89), Expect = 4e-41
 Identities = 113/121 (93%)
 Strand = Plus / Plus

                                                                            
Query: 275      aggcgtcggcgaagcggttcagggtgacggggacggggaagatcgtgcggcgctgcgccg 334
                |||||||||||||||||||| |||||||||||| ||||||||||||||||||  ||||||
Sbjct: 26059448 aggcgtcggcgaagcggttccgggtgacggggagggggaagatcgtgcggcggcgcgccg 26059507

                                                                            
Query: 335      ggaagcagcatctgctcagcaagaagaacgccaagcgcaggaagaggctctccaagatgg 394
                |||||||||| || ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 26059508 ggaagcagcaccttctcagcaagaagaacaccaagcgcaggaagaggctatccaagatgg 26059567

                 
Query: 395      t 395
                |
Sbjct: 26059568 t 26059568



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 45       agccatggccatgtcgctctccctcgcgcgc 75
                ||||||||||||||| |||||||||||||||
Sbjct: 26059117 agccatggccatgtccctctccctcgcgcgc 26059147



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                              
Query: 248      ggaaggggtacaagatgaagacgcacaagg 277
                |||||||||||||||||||||| |||||||
Sbjct: 26059338 ggaaggggtacaagatgaagacccacaagg 26059367

---

>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1226_A12
          Length = 113025

 Score =  176 bits (89), Expect = 4e-41
 Identities = 113/121 (93%)
 Strand = Plus / Plus

                                                                         
Query: 275   aggcgtcggcgaagcggttcagggtgacggggacggggaagatcgtgcggcgctgcgccg 334
             |||||||||||||||||||| |||||||||||| ||||||||||||||||||  ||||||
Sbjct: 97306 aggcgtcggcgaagcggttccgggtgacggggagggggaagatcgtgcggcggcgcgccg 97365

                                                                         
Query: 335   ggaagcagcatctgctcagcaagaagaacgccaagcgcaggaagaggctctccaagatgg 394
             |||||||||| || ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 97366 ggaagcagcaccttctcagcaagaagaacaccaagcgcaggaagaggctatccaagatgg 97425

              
Query: 395   t 395
             |
Sbjct: 97426 t 97426



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 45    agccatggccatgtcgctctccctcgcgcgc 75
             ||||||||||||||| |||||||||||||||
Sbjct: 96975 agccatggccatgtccctctccctcgcgcgc 97005



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 248   ggaaggggtacaagatgaagacgcacaagg 277
             |||||||||||||||||||||| |||||||
Sbjct: 97196 ggaaggggtacaagatgaagacccacaagg 97225

---

>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0062J02
          Length = 151636

 Score =  176 bits (89), Expect = 4e-41
 Identities = 113/121 (93%)
 Strand = Plus / Plus

                                                                         
Query: 275   aggcgtcggcgaagcggttcagggtgacggggacggggaagatcgtgcggcgctgcgccg 334
             |||||||||||||||||||| |||||||||||| ||||||||||||||||||  ||||||
Sbjct: 38693 aggcgtcggcgaagcggttccgggtgacggggagggggaagatcgtgcggcggcgcgccg 38752

                                                                         
Query: 335   ggaagcagcatctgctcagcaagaagaacgccaagcgcaggaagaggctctccaagatgg 394
             |||||||||| || ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 38753 ggaagcagcaccttctcagcaagaagaacaccaagcgcaggaagaggctatccaagatgg 38812

              
Query: 395   t 395
             |
Sbjct: 38813 t 38813



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 45    agccatggccatgtcgctctccctcgcgcgc 75
             ||||||||||||||| |||||||||||||||
Sbjct: 38362 agccatggccatgtccctctccctcgcgcgc 38392



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 248   ggaaggggtacaagatgaagacgcacaagg 277
             |||||||||||||||||||||| |||||||
Sbjct: 38583 ggaaggggtacaagatgaagacccacaagg 38612

---

>emb|AJ431185.1|ZMA431185 Zea mays prpl35-1 gene for putative plastid ribosomal protein L35,
            exons 1-3, cultivar hybrid HD5xHD7
          Length = 5620

 Score =  157 bits (79), Expect = 4e-35
 Identities = 112/123 (91%)
 Strand = Plus / Plus

                                                                        
Query: 273  caaggcgtcggcgaagcggttcagggtgacggggacggggaagatcgtgcggcgctgcgc 332
            |||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||
Sbjct: 2203 caaggcgtcggcgaagcggttccgggtgacggggaggggcaagatcgtgcggcggtgcgc 2262

                                                                        
Query: 333  cgggaagcagcatctgctcagcaagaagaacgccaagcgcaggaagaggctctccaagat 392
            ||||||||||||  |||||  |||||||||| ||||||||| |||||||||||| |||||
Sbjct: 2263 cgggaagcagcacttgctcgccaagaagaacaccaagcgcaagaagaggctctcgaagat 2322

               
Query: 393  ggt 395
            |||
Sbjct: 2323 ggt 2325



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 249  gaaggggtacaagatgaagacgcacaagg 277
            |||||| ||||||||||||||||||||||
Sbjct: 2072 gaagggctacaagatgaagacgcacaagg 2100

---

>emb|AJ431187.1|ZMA431187 Zea mays partial prpl35-1 gene for putative plastid ribosomal
           protein L35, exons 1-3, cultivar stock Rscm2
          Length = 1920

 Score =  157 bits (79), Expect = 4e-35
 Identities = 112/123 (91%)
 Strand = Plus / Plus

                                                                       
Query: 273 caaggcgtcggcgaagcggttcagggtgacggggacggggaagatcgtgcggcgctgcgc 332
           |||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||
Sbjct: 141 caaggcgtcggcgaagcggttccgggtgacggggaggggcaagatcgtgcggcggtgcgc 200

                                                                       
Query: 333 cgggaagcagcatctgctcagcaagaagaacgccaagcgcaggaagaggctctccaagat 392
           ||||||||||||  |||||  |||||||||| ||||||||| |||||||||||| |||||
Sbjct: 201 cgggaagcagcacttgctcgccaagaagaacaccaagcgcaagaagaggctctcgaagat 260

              
Query: 393 ggt 395
           |||
Sbjct: 261 ggt 263



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 249 gaaggggtacaagatgaagacgcacaagg 277
           |||||| ||||||||||||||||||||||
Sbjct: 10  gaagggctacaagatgaagacgcacaagg 38

---

>emb|AJ431189.1|ZMA431189 Zea mays partial prpl35-3 gene for putative plastid ribosomal
           protein L35, exons 1-3, cultivar stock Rscm2
          Length = 1903

 Score =  149 bits (75), Expect = 9e-33
 Identities = 111/123 (90%)
 Strand = Plus / Plus

                                                                       
Query: 273 caaggcgtcggcgaagcggttcagggtgacggggacggggaagatcgtgcggcgctgcgc 332
           |||||||||||||||||||||| |||||||||| | ||| |||||||||||||| |||||
Sbjct: 146 caaggcgtcggcgaagcggttccgggtgacgggaaggggcaagatcgtgcggcggtgcgc 205

                                                                       
Query: 333 cgggaagcagcatctgctcagcaagaagaacgccaagcgcaggaagaggctctccaagat 392
           ||||| |||||| ||||||  |||||||||| ||||||||| |||||||||||| |||||
Sbjct: 206 cgggacgcagcacctgctcgccaagaagaacaccaagcgcaagaagaggctctcgaagat 265

              
Query: 393 ggt 395
           |||
Sbjct: 266 ggt 268



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 249 gaaggggtacaagatgaagacgcacaagg 277
           |||||| ||||||||||||||||||||||
Sbjct: 8   gaagggctacaagatgaagacgcacaagg 36

---

>emb|AJ431186.1|ZMA431186 Zea mays partial prpl35-1 gene for putative plastid ribosomal
           protein L35, exons 1-3, cultivar inbred A188
          Length = 2004

 Score =  149 bits (75), Expect = 9e-33
 Identities = 111/123 (90%)
 Strand = Plus / Plus

                                                                       
Query: 273 caaggcgtcggcgaagcggttcagggtgacggggacggggaagatcgtgcggcgctgcgc 332
           |||||||||||||||||||||| |||||||| ||| ||| |||||||||||||| |||||
Sbjct: 142 caaggcgtcggcgaagcggttccgggtgacgcggaggggcaagatcgtgcggcggtgcgc 201

                                                                       
Query: 333 cgggaagcagcatctgctcagcaagaagaacgccaagcgcaggaagaggctctccaagat 392
           ||||||||||||  |||||  |||||||||| ||||||||| |||||||||||| |||||
Sbjct: 202 cgggaagcagcacttgctcgccaagaagaacaccaagcgcaagaagaggctctcgaagat 261

              
Query: 393 ggt 395
           |||
Sbjct: 262 ggt 264



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 249 gaaggggtacaagatgaagacgcacaagg 277
           |||||| ||||||||||||||||||||||
Sbjct: 10  gaagggctacaagatgaagacgcacaagg 38

---

>emb|AJ431188.1|ZMA431188 Zea mays partial prpl35-2 pseudogene for putative plastid ribosomal
           protein L35, cultivar stock Rscm2, exons 1-3 and joined
           CDS
          Length = 1529

 Score =  127 bits (64), Expect = 3e-26
 Identities = 109/123 (88%), Gaps = 2/123 (1%)
 Strand = Plus / Plus

                                                                       
Query: 273 caaggcgtcggcgaagcggttcagggtgacggggacggggaagatcgtgcggcgctgcgc 332
           |||||||||||||||||||||| |||||||||||| ||| |||||||||||   ||| ||
Sbjct: 129 caaggcgtcggcgaagcggttccgggtgacggggaggggcaagatcgtgcg--cctgtgc 186

                                                                       
Query: 333 cgggaagcagcatctgctcagcaagaagaacgccaagcgcaggaagaggctctccaagat 392
           ||||||||||||  |||||  |||||| ||| ||||||||| ||||||||||||||||||
Sbjct: 187 cgggaagcagcacttgctcgccaagaaaaacaccaagcgcaagaagaggctctccaagat 246

              
Query: 393 ggt 395
           |||
Sbjct: 247 ggt 249

---

>emb|AJ431191.1|ZMA431191 Zea mays partial prpl35-5 pseudogene for putative plastid ribosomal
           protein L35, cultivar inbred A188
          Length = 451

 Score =  115 bits (58), Expect = 1e-22
 Identities = 97/110 (88%)
 Strand = Plus / Plus

                                                                       
Query: 286 aagcggttcagggtgacggggacggggaagatcgtgcggcgctgcgccgggaagcagcat 345
           ||||||||| |||| ||||||| ||| ||||||||||| || ||||||||||||||||| 
Sbjct: 106 aagcggttccgggtaacggggaggggtaagatcgtgcgccggtgcgccgggaagcagcac 165

                                                             
Query: 346 ctgctcagcaagaagaacgccaagcgcaggaagaggctctccaagatggt 395
            |||||  |||||| ||| ||||||||| |||||||||||||||||||||
Sbjct: 166 ttgctcgccaagaaaaacaccaagcgcaagaagaggctctccaagatggt 215



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 273 caaggcgtcggcgaagcggttcagggtgacgggga 307
           |||||||||||||||||||||| |||| |||||||
Sbjct: 31  caaggcgtcggcgaagcggttccgggtaacgggga 65

---

>gb|AY112142.1| Zea mays CL10750_2 mRNA sequence
          Length = 592

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 101/118 (85%)
 Strand = Plus / Minus

                                                                       
Query: 276 ggcgtcggcgaagcggttcagggtgacggggacggggaagatcgtgcggcgctgcgccgg 335
           |||||||| |||||||||  ||||||| |||| ||  |||||||||||| | ||||||||
Sbjct: 568 ggcgtcggtgaagcggtttcgggtgacagggaaggacaagatcgtgcggtggtgcgccgg 509

                                                                     
Query: 336 gaagcagcatctgctcagcaagaagaacgccaagcgcaggaagaggctctccaagatg 393
           |||||| ||  |||||  |||||||||| ||||||||| |||||| ||||||||||||
Sbjct: 508 gaagcaacacttgctcgccaagaagaacaccaagcgcaagaagagactctccaagatg 451

---

>ref|NM_179716.1| Arabidopsis thaliana structural constituent of ribosome AT2G24090
           mRNA, complete cds
          Length = 697

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 250 aaggggtacaagatgaagacgcacaaggcgtcggcgaagcggttcagggtgacggg 305
           ||||| |||||||||||||| |||||||| || |||||||||||||| ||||||||
Sbjct: 279 aagggctacaagatgaagacccacaaggcctcagcgaagcggttcagagtgacggg 334

---

>gb|AY096532.1| Arabidopsis thaliana putative chloroplast ribosomal protein L35
           (At2g24090) mRNA, complete cds
          Length = 469

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 250 aaggggtacaagatgaagacgcacaaggcgtcggcgaagcggttcagggtgacggg 305
           ||||| |||||||||||||| |||||||| || |||||||||||||| ||||||||
Sbjct: 217 aagggctacaagatgaagacccacaaggcctcagcgaagcggttcagagtgacggg 272

---

>gb|AY065235.1| Arabidopsis thaliana putative chloroplast ribosomal protein L35
           (At2g24090) mRNA, complete cds
          Length = 657

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 250 aaggggtacaagatgaagacgcacaaggcgtcggcgaagcggttcagggtgacggg 305
           ||||| |||||||||||||| |||||||| || |||||||||||||| ||||||||
Sbjct: 279 aagggctacaagatgaagacccacaaggcctcagcgaagcggttcagagtgacggg 334

---

>emb|BX819034.1|CNS0A8SW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB39ZD08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 554

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 250 aaggggtacaagatgaagacgcacaaggcgtcggcgaagcggttcagggtgacggg 305
           ||||| |||||||||||||| |||||||| || |||||||||||||| ||||||||
Sbjct: 266 aagggctacaagatgaagacccacaaggcctcagcgaagcggttcagagtgacggg 321

---

>emb|BX821936.1|CNS0A89I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL86ZB09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 586

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 250 aaggggtacaagatgaagacgcacaaggcgtcggcgaagcggttcagggtgacggg 305
           ||||| |||||||||||||| |||||||| || |||||||||||||| ||||||||
Sbjct: 251 aagggctacaagatgaagacccacaaggcctcagcgaagcggttcagagtgacggg 306

---

>emb|AJ431190.1|ZMA431190 Zea mays partial prpl35-4 gene for putative plastid ribosomal
           protein L35, exon 1, cultivar hybrid HD5xHD7
          Length = 2157

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 99/120 (82%)
 Strand = Plus / Plus

                                                                       
Query: 276 ggcgtcggcgaagcggttcagggtgacggggacggggaagatcgtgcggcgctgcgccgg 335
           |||||||| |||||| ||  |||||||  ||| ||  |||||| ||||||| ||| ||||
Sbjct: 713 ggcgtcggtgaagcgatttcgggtgacaaggaaggacaagatcatgcggcggtgcaccgg 772

                                                                       
Query: 336 gaagcagcatctgctcagcaagaagaacgccaagcgcaggaagaggctctccaagatggt 395
           |||||| ||  |||||  |||||| ||| ||||||||| |||||| ||||||||||||||
Sbjct: 773 gaagcaacacttgctcgccaagaaaaacaccaagcgcaagaagagactctccaagatggt 832

---

>gb|M60449.1|SPIRPL35A Spinach chloroplast ribosomal protein L35 mRNA, complete cds
          Length = 740

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 89/111 (80%)
 Strand = Plus / Plus

                                                                       
Query: 253 gggtacaagatgaagacgcacaaggcgtcggcgaagcggttcagggtgacggggacgggg 312
           ||||||||||||||||| |||||||| || || ||| | || ||||| || || | ||||
Sbjct: 334 gggtacaagatgaagacccacaaggcctcagcaaagagatttagggtaactggaaagggg 393

                                                              
Query: 313 aagatcgtgcggcgctgcgccgggaagcagcatctgctcagcaagaagaac 363
           ||||| ||| || |  | || ||||||||||| || |||  ||||||||||
Sbjct: 394 aagattgtgaggaggagagctgggaagcagcaccttctcgccaagaagaac 444

---

>gb|AC108734.10| Homo sapiens 3 BAC RP11-259P15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 125990

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 82    ctgccgccggtcctccaggccctcc 106
             |||||||||| ||||||||||||||
Sbjct: 66155 ctgccgccgggcctccaggccctcc 66179

---

>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 72     gcgccaggccctgccgccggtcctc 96
              |||||||||| ||||||||||||||
Sbjct: 384718 gcgccaggccttgccgccggtcctc 384742

---

>dbj|D87817.1| Thermus thermophilus DNA for geranylgeranyl diphosphate synthetase,
           complete cds
          Length = 1035

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 95  tccaggccctcccgggaaggaggcc 119
           |||||| ||||||||||||||||||
Sbjct: 890 tccaggacctcccgggaaggaggcc 914

---

>gb|AY587241.1| Hepatitis C virus isolate IstHCVSA15 nonstructural protein 5b gene,
           partial cds
          Length = 348

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 gaagatcgtgcggcgctgcg 331
           ||||||||||||||||||||
Sbjct: 325 gaagatcgtgcggcgctgcg 344

---

>ref|XM_990445.1| PREDICTED: Mus musculus RIKEN cDNA 8430438M01 gene (8430438M01Rik),
           mRNA
          Length = 2911

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 gggaagcagcatctgctcag 353
           ||||||||||||||||||||
Sbjct: 114 gggaagcagcatctgctcag 133

---

>ref|XM_911119.2| PREDICTED: Mus musculus RIKEN cDNA 8430438M01 gene (8430438M01Rik),
           mRNA
          Length = 2911

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 gggaagcagcatctgctcag 353
           ||||||||||||||||||||
Sbjct: 114 gggaagcagcatctgctcag 133

---

>ref|XM_140320.6| PREDICTED: Mus musculus RIKEN cDNA 8430438M01 gene (8430438M01Rik),
           mRNA
          Length = 2911

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 gggaagcagcatctgctcag 353
           ||||||||||||||||||||
Sbjct: 114 gggaagcagcatctgctcag 133

---

>emb|AL360176.22| Human DNA sequence from clone RP11-124H7 on chromosome 10 Contains the
             5' end of the MMP21 gene for matrix metalloproteinase 21,
             the UROS gene for uroporphyrinogen III synthase
             (congenital erythropoietic porphyria), the BCCIP gene for
             BRCA2 and CDKN1A interacting protein (TOK-1), the DDX32
             gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32
             (FLJ10694, FLJ10889), the 5' UTR of a novel gene
             (LOC92565) and three CpG islands, complete sequence
          Length = 155699

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   ggtgacggggacggggaaga 316
             ||||||||||||||||||||
Sbjct: 10547 ggtgacggggacggggaaga 10528

---

>gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence
          Length = 120464

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    cgcgccaggccctgccgccg 90
             ||||||||||||||||||||
Sbjct: 58285 cgcgccaggccctgccgccg 58304

---

>gb|AY121358.1| Homo sapiens MMP21 protein (MMP21) gene, complete cds
          Length = 10358

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 297 ggtgacggggacggggaaga 316
           ||||||||||||||||||||
Sbjct: 854 ggtgacggggacggggaaga 873

---

>dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome
          Length = 1166239

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    gcatctgctcagcaagaaga 361
              ||||||||||||||||||||
Sbjct: 804879 gcatctgctcagcaagaaga 804860

---

>gb|AC005967.3| Arabidopsis thaliana chromosome 2 clone F27D4 map CIC06C07, complete
            sequence
          Length = 96046

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 250  aaggggtacaagatgaagacgcacaagg 277
            ||||| |||||||||||||| |||||||
Sbjct: 1219 aagggctacaagatgaagacccacaagg 1246

---

>gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E15 map CIC06C07, complete
              sequence
          Length = 108056

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 250    aaggggtacaagatgaagacgcacaagg 277
              ||||| |||||||||||||| |||||||
Sbjct: 105346 aagggctacaagatgaagacccacaagg 105373

---

>gb|AC148019.5| Mus musculus BAC clone RP23-12B6 from chromosome 18, complete sequence
          Length = 211149

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   gggaagcagcatctgctcag 353
             ||||||||||||||||||||
Sbjct: 86809 gggaagcagcatctgctcag 86790

---

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    gacggggacggggaagatcg 319
              ||||||||||||||||||||
Sbjct: 106316 gacggggacggggaagatcg 106335

---

>emb|X87332.1|ATRPL35GE A.thaliana rpl35 gene
          Length = 2043

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 250 aaggggtacaagatgaagacgcacaagg 277
           ||||| |||||||||||||| |||||||
Sbjct: 622 aagggctacaagatgaagacccacaagg 649

---

>emb|AJ323697.1|HSA323697 Homo sapiens genomic sequence surrounding NotI site, clone NR3-174S
          Length = 986

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  cgccggtcctccaggccctc 105
           ||||||||||||||||||||
Sbjct: 468 cgccggtcctccaggccctc 449

---

>gb|AY111793.1| Zea mays CL19330_1 mRNA sequence
          Length = 1192

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 90  ggtcctccaggccctcccgggaaggagg 117
           ||||||||||| |||| |||||||||||
Sbjct: 513 ggtcctccaggtcctcacgggaaggagg 486

---

>gb|AC006212.1|AC006212 Homo sapiens, clone hRPK.14_A_1, complete sequence
          Length = 157772

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   aggctctccaagatggtcca 398
             ||||||||||||||||||||
Sbjct: 87876 aggctctccaagatggtcca 87895

---

>gb|AC005944.1|AC005944 Homo sapiens chromosome 19, cosmid F23613, complete sequence
          Length = 42301

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 92   tcctccaggccctcccgggaagga 115
            |||| |||||||||||||||||||
Sbjct: 9898 tcctacaggccctcccgggaagga 9921

---

>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    gcatctgctcagcaagaaga 361
              ||||||||||||||||||||
Sbjct: 356840 gcatctgctcagcaagaaga 356859

---

>gb|AY885252.1| Homo sapiens matrix metalloproteinase 21 (MMP21) gene, complete cds
          Length = 13375

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  ggtgacggggacggggaaga 316
            ||||||||||||||||||||
Sbjct: 1948 ggtgacggggacggggaaga 1967

---

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     cctgccgccggtcctccagg 100
              ||||||||||||||||||||
Sbjct: 163382 cctgccgccggtcctccagg 163363


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,400,389
Number of Sequences: 3902068
Number of extensions: 2400389
Number of successful extensions: 47101
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46832
Number of HSP's gapped (non-prelim): 267
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---