ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast70b08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 389 bits (196), Expect = e-105 Identities = 379/440 (86%) Strand = Plus / Minus Query: 1 gcgtgctcccgcacaccttcgccgccgcgtgcctcgtcggccgtgccgcctcgttccagg 60 ||||||| |||||| | |||||||||||||||||||| ||||| |||||| ||||||||| Sbjct: 10745915 gcgtgctgccgcacccgttcgccgccgcgtgcctcgttggccgcgccgccgcgttccagg 10745856 Query: 61 ccggcgggcgcccagcagacgccatagcagattgcaaccgtgcgctggctctcgaccctg 120 |||| || ||||| || |||||||| || || |||||||||||||| || |||||||| | Sbjct: 10745855 ccggtggccgccccgccgacgccatcgcggactgcaaccgtgcgctcgcgctcgaccccg 10745796 Query: 121 cgtacatcccggcgctccgcgcccgtgccgaccttcttcagtccgtgggggcgctcagcg 180 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 10745795 cctacatcccggcgctccgcgcccgtgccgaccttcttcagtccgtgggtgcgcttgccg 10745736 Query: 181 attcccttcgtgaccttgaccacctcaaacttctgtacgacgcggcgctccgtgacggca 240 ||| || |||||||||||||| ||||| || || || ||||| |||||||| ||||| | Sbjct: 10745735 attgtctccgtgaccttgaccatctcaagctactctatgacgccgcgctccgggacggga 10745676 Query: 241 agctgccggggcctaggtggcgaccgcagggtggtgtgcgctaccgcgagatcgccggcg 300 |||| || || || ||||||||||| |||||||| || || ||||||||||||||||||| Sbjct: 10745675 agcttccaggccccaggtggcgaccacagggtggcgtccggtaccgcgagatcgccggcg 10745616 Query: 301 ctcaccgcaagttgatcgcccggattcaggggctacgcagccgcgccgccgtcggcgagg 360 | ||||||||| | | ||| || || || ||||| |||||||| | ||||| |||||||| Sbjct: 10745615 cgcaccgcaagcttaccgcgcgcatccaagggctccgcagccgtgtcgccgccggcgagg 10745556 Query: 361 ggtgtaacatcgactactacgctctactgggcgtgcggcgcgggtgcacgcgctctgagc 420 |||||||||||| |||||||| || ||||| || || ||||| |||||||||||||||| Sbjct: 10745555 cgtgtaacatcgattactacgcgcttctgggtgttcgacgcggatgcacgcgctctgagc 10745496 Query: 421 tggagcgcgcgcacttgctg 440 |||| ||||||||||||||| Sbjct: 10745495 tggaacgcgcgcacttgctg 10745476
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence Length = 187621 Score = 389 bits (196), Expect = e-105 Identities = 379/440 (86%) Strand = Plus / Minus Query: 1 gcgtgctcccgcacaccttcgccgccgcgtgcctcgtcggccgtgccgcctcgttccagg 60 ||||||| |||||| | |||||||||||||||||||| ||||| |||||| ||||||||| Sbjct: 162829 gcgtgctgccgcacccgttcgccgccgcgtgcctcgttggccgcgccgccgcgttccagg 162770 Query: 61 ccggcgggcgcccagcagacgccatagcagattgcaaccgtgcgctggctctcgaccctg 120 |||| || ||||| || |||||||| || || |||||||||||||| || |||||||| | Sbjct: 162769 ccggtggccgccccgccgacgccatcgcggactgcaaccgtgcgctcgcgctcgaccccg 162710 Query: 121 cgtacatcccggcgctccgcgcccgtgccgaccttcttcagtccgtgggggcgctcagcg 180 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 162709 cctacatcccggcgctccgcgcccgtgccgaccttcttcagtccgtgggtgcgcttgccg 162650 Query: 181 attcccttcgtgaccttgaccacctcaaacttctgtacgacgcggcgctccgtgacggca 240 ||| || |||||||||||||| ||||| || || || ||||| |||||||| ||||| | Sbjct: 162649 attgtctccgtgaccttgaccatctcaagctactctatgacgccgcgctccgggacggga 162590 Query: 241 agctgccggggcctaggtggcgaccgcagggtggtgtgcgctaccgcgagatcgccggcg 300 |||| || || || ||||||||||| |||||||| || || ||||||||||||||||||| Sbjct: 162589 agcttccaggccccaggtggcgaccacagggtggcgtccggtaccgcgagatcgccggcg 162530 Query: 301 ctcaccgcaagttgatcgcccggattcaggggctacgcagccgcgccgccgtcggcgagg 360 | ||||||||| | | ||| || || || ||||| |||||||| | ||||| |||||||| Sbjct: 162529 cgcaccgcaagcttaccgcgcgcatccaagggctccgcagccgtgtcgccgccggcgagg 162470 Query: 361 ggtgtaacatcgactactacgctctactgggcgtgcggcgcgggtgcacgcgctctgagc 420 |||||||||||| |||||||| || ||||| || || ||||| |||||||||||||||| Sbjct: 162469 cgtgtaacatcgattactacgcgcttctgggtgttcgacgcggatgcacgcgctctgagc 162410 Query: 421 tggagcgcgcgcacttgctg 440 |||| ||||||||||||||| Sbjct: 162409 tggaacgcgcgcacttgctg 162390
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 389 bits (196), Expect = e-105 Identities = 379/440 (86%) Strand = Plus / Minus Query: 1 gcgtgctcccgcacaccttcgccgccgcgtgcctcgtcggccgtgccgcctcgttccagg 60 ||||||| |||||| | |||||||||||||||||||| ||||| |||||| ||||||||| Sbjct: 10744016 gcgtgctgccgcacccgttcgccgccgcgtgcctcgttggccgcgccgccgcgttccagg 10743957 Query: 61 ccggcgggcgcccagcagacgccatagcagattgcaaccgtgcgctggctctcgaccctg 120 |||| || ||||| || |||||||| || || |||||||||||||| || |||||||| | Sbjct: 10743956 ccggtggccgccccgccgacgccatcgcggactgcaaccgtgcgctcgcgctcgaccccg 10743897 Query: 121 cgtacatcccggcgctccgcgcccgtgccgaccttcttcagtccgtgggggcgctcagcg 180 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 10743896 cctacatcccggcgctccgcgcccgtgccgaccttcttcagtccgtgggtgcgcttgccg 10743837 Query: 181 attcccttcgtgaccttgaccacctcaaacttctgtacgacgcggcgctccgtgacggca 240 ||| || |||||||||||||| ||||| || || || ||||| |||||||| ||||| | Sbjct: 10743836 attgtctccgtgaccttgaccatctcaagctactctatgacgccgcgctccgggacggga 10743777 Query: 241 agctgccggggcctaggtggcgaccgcagggtggtgtgcgctaccgcgagatcgccggcg 300 |||| || || || ||||||||||| |||||||| || || ||||||||||||||||||| Sbjct: 10743776 agcttccaggccccaggtggcgaccacagggtggcgtccggtaccgcgagatcgccggcg 10743717 Query: 301 ctcaccgcaagttgatcgcccggattcaggggctacgcagccgcgccgccgtcggcgagg 360 | ||||||||| | | ||| || || || ||||| |||||||| | ||||| |||||||| Sbjct: 10743716 cgcaccgcaagcttaccgcgcgcatccaagggctccgcagccgtgtcgccgccggcgagg 10743657 Query: 361 ggtgtaacatcgactactacgctctactgggcgtgcggcgcgggtgcacgcgctctgagc 420 |||||||||||| |||||||| || ||||| || || ||||| |||||||||||||||| Sbjct: 10743656 cgtgtaacatcgattactacgcgcttctgggtgttcgacgcggatgcacgcgctctgagc 10743597 Query: 421 tggagcgcgcgcacttgctg 440 |||| ||||||||||||||| Sbjct: 10743596 tggaacgcgcgcacttgctg 10743577
>dbj|AK101290.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033G09, full insert sequence Length = 2465 Score = 389 bits (196), Expect = e-105 Identities = 379/440 (86%) Strand = Plus / Plus Query: 1 gcgtgctcccgcacaccttcgccgccgcgtgcctcgtcggccgtgccgcctcgttccagg 60 ||||||| |||||| | |||||||||||||||||||| ||||| |||||| ||||||||| Sbjct: 1007 gcgtgctgccgcacccgttcgccgccgcgtgcctcgttggccgcgccgccgcgttccagg 1066 Query: 61 ccggcgggcgcccagcagacgccatagcagattgcaaccgtgcgctggctctcgaccctg 120 |||| || ||||| || |||||||| || || |||||||||||||| || |||||||| | Sbjct: 1067 ccggtggccgccccgccgacgccatcgcggactgcaaccgtgcgctcgcgctcgaccccg 1126 Query: 121 cgtacatcccggcgctccgcgcccgtgccgaccttcttcagtccgtgggggcgctcagcg 180 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 1127 cctacatcccggcgctccgcgcccgtgccgaccttcttcagtccgtgggtgcgcttgccg 1186 Query: 181 attcccttcgtgaccttgaccacctcaaacttctgtacgacgcggcgctccgtgacggca 240 ||| || |||||||||||||| ||||| || || || ||||| |||||||| ||||| | Sbjct: 1187 attgtctccgtgaccttgaccatctcaagctactctatgacgccgcgctccgggacggga 1246 Query: 241 agctgccggggcctaggtggcgaccgcagggtggtgtgcgctaccgcgagatcgccggcg 300 |||| || || || ||||||||||| |||||||| || || ||||||||||||||||||| Sbjct: 1247 agcttccaggccccaggtggcgaccacagggtggcgtccggtaccgcgagatcgccggcg 1306 Query: 301 ctcaccgcaagttgatcgcccggattcaggggctacgcagccgcgccgccgtcggcgagg 360 | ||||||||| | | ||| || || || ||||| |||||||| | ||||| |||||||| Sbjct: 1307 cgcaccgcaagcttaccgcgcgcatccaagggctccgcagccgtgtcgccgccggcgagg 1366 Query: 361 ggtgtaacatcgactactacgctctactgggcgtgcggcgcgggtgcacgcgctctgagc 420 |||||||||||| |||||||| || ||||| || || ||||| |||||||||||||||| Sbjct: 1367 cgtgtaacatcgattactacgcgcttctgggtgttcgacgcggatgcacgcgctctgagc 1426 Query: 421 tggagcgcgcgcacttgctg 440 |||| ||||||||||||||| Sbjct: 1427 tggaacgcgcgcacttgctg 1446
>ref|XM_479608.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2204 Score = 186 bits (94), Expect = 4e-44 Identities = 349/434 (80%) Strand = Plus / Plus Query: 1 gcgtgctcccgcacaccttcgccgccgcgtgcctcgtcggccgtgccgcctcgttccagg 60 |||||||||||||| | ||||| |||| |||||||||||||| |||| || ||| Sbjct: 889 gcgtgctcccgcacccgttcgcgaccgcctgcctcgtcggccgcgccgaggcgctccgtt 948 Query: 61 ccggcgggcgcccagcagacgccatagcagattgcaaccgtgcgctggctctcgaccctg 120 || ||||||| |||| |||||||| || || |||||||| ||||| || || ||||| | Sbjct: 949 ccagcgggcgggcagccgacgccatcgccgactgcaaccgcgcgctcgcgcttgacccgg 1008 Query: 121 cgtacatcccggcgctccgcgcccgtgccgaccttcttcagtccgtgggggcgctcagcg 180 ||| |||||||||||| ||| | || ||||||||||| |||| || ||||||||||||| Sbjct: 1009 cgttcatcccggcgctgcgctcgcgcgccgaccttctcgagtcggtaggggcgctcagcg 1068 Query: 181 attcccttcgtgaccttgaccacctcaaacttctgtacgacgcggcgctccgtgacggca 240 | | ||| || ||||| || |||||||| || || ||||||||||||||||| ||||||| Sbjct: 1069 actgcctccgcgacctggagcacctcaagctcctctacgacgcggcgctccgcgacggca 1128 Query: 241 agctgccggggcctaggtggcgaccgcagggtggtgtgcgctaccgcgagatcgccggcg 300 ||||||||||||| | ||||| || ||||| || || |||| | | ||||||||||||| Sbjct: 1129 agctgccggggccgacatggcggccccagggcggcgttcgcttcagtgagatcgccggcg 1188 Query: 301 ctcaccgcaagttgatcgcccggattcaggggctacgcagccgcgccgccgtcggcgagg 360 | |||||| | ||| | | || || ||| ||| ||| | |||| |||| |||||||| Sbjct: 1189 cgcaccgcgcgctgaccccacgcatccagcagctccgcgggcgcgtggccggcggcgagg 1248 Query: 361 ggtgtaacatcgactactacgctctactgggcgtgcggcgcgggtgcacgcgctctgagc 420 ||| | | | ||||||||||| || || || ||||| ||||| |||||||| || |||| Sbjct: 1249 cgtgcagcgtggactactacgccctcctcggtgtgcgccgcggttgcacgcggtcggagc 1308 Query: 421 tggagcgcgcgcac 434 |||||||||||||| Sbjct: 1309 tggagcgcgcgcac 1322
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 186 bits (94), Expect = 4e-44 Identities = 349/434 (80%) Strand = Plus / Plus Query: 1 gcgtgctcccgcacaccttcgccgccgcgtgcctcgtcggccgtgccgcctcgttccagg 60 |||||||||||||| | ||||| |||| |||||||||||||| |||| || ||| Sbjct: 29286256 gcgtgctcccgcacccgttcgcgaccgcctgcctcgtcggccgcgccgaggcgctccgtt 29286315 Query: 61 ccggcgggcgcccagcagacgccatagcagattgcaaccgtgcgctggctctcgaccctg 120 || ||||||| |||| |||||||| || || |||||||| ||||| || || ||||| | Sbjct: 29286316 ccagcgggcgggcagccgacgccatcgccgactgcaaccgcgcgctcgcgcttgacccgg 29286375 Query: 121 cgtacatcccggcgctccgcgcccgtgccgaccttcttcagtccgtgggggcgctcagcg 180 ||| |||||||||||| ||| | || ||||||||||| |||| || ||||||||||||| Sbjct: 29286376 cgttcatcccggcgctgcgctcgcgcgccgaccttctcgagtcggtaggggcgctcagcg 29286435 Query: 181 attcccttcgtgaccttgaccacctcaaacttctgtacgacgcggcgctccgtgacggca 240 | | ||| || ||||| || |||||||| || || ||||||||||||||||| ||||||| Sbjct: 29286436 actgcctccgcgacctggagcacctcaagctcctctacgacgcggcgctccgcgacggca 29286495 Query: 241 agctgccggggcctaggtggcgaccgcagggtggtgtgcgctaccgcgagatcgccggcg 300 ||||||||||||| | ||||| || ||||| || || |||| | | ||||||||||||| Sbjct: 29286496 agctgccggggccgacatggcggccccagggcggcgttcgcttcagtgagatcgccggcg 29286555 Query: 301 ctcaccgcaagttgatcgcccggattcaggggctacgcagccgcgccgccgtcggcgagg 360 | |||||| | ||| | | || || ||| ||| ||| | |||| |||| |||||||| Sbjct: 29286556 cgcaccgcgcgctgaccccacgcatccagcagctccgcgggcgcgtggccggcggcgagg 29286615 Query: 361 ggtgtaacatcgactactacgctctactgggcgtgcggcgcgggtgcacgcgctctgagc 420 ||| | | | ||||||||||| || || || ||||| ||||| |||||||| || |||| Sbjct: 29286616 cgtgcagcgtggactactacgccctcctcggtgtgcgccgcggttgcacgcggtcggagc 29286675 Query: 421 tggagcgcgcgcac 434 |||||||||||||| Sbjct: 29286676 tggagcgcgcgcac 29286689
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0597G07 Length = 152928 Score = 186 bits (94), Expect = 4e-44 Identities = 349/434 (80%) Strand = Plus / Plus Query: 1 gcgtgctcccgcacaccttcgccgccgcgtgcctcgtcggccgtgccgcctcgttccagg 60 |||||||||||||| | ||||| |||| |||||||||||||| |||| || ||| Sbjct: 74945 gcgtgctcccgcacccgttcgcgaccgcctgcctcgtcggccgcgccgaggcgctccgtt 75004 Query: 61 ccggcgggcgcccagcagacgccatagcagattgcaaccgtgcgctggctctcgaccctg 120 || ||||||| |||| |||||||| || || |||||||| ||||| || || ||||| | Sbjct: 75005 ccagcgggcgggcagccgacgccatcgccgactgcaaccgcgcgctcgcgcttgacccgg 75064 Query: 121 cgtacatcccggcgctccgcgcccgtgccgaccttcttcagtccgtgggggcgctcagcg 180 ||| |||||||||||| ||| | || ||||||||||| |||| || ||||||||||||| Sbjct: 75065 cgttcatcccggcgctgcgctcgcgcgccgaccttctcgagtcggtaggggcgctcagcg 75124 Query: 181 attcccttcgtgaccttgaccacctcaaacttctgtacgacgcggcgctccgtgacggca 240 | | ||| || ||||| || |||||||| || || ||||||||||||||||| ||||||| Sbjct: 75125 actgcctccgcgacctggagcacctcaagctcctctacgacgcggcgctccgcgacggca 75184 Query: 241 agctgccggggcctaggtggcgaccgcagggtggtgtgcgctaccgcgagatcgccggcg 300 ||||||||||||| | ||||| || ||||| || || |||| | | ||||||||||||| Sbjct: 75185 agctgccggggccgacatggcggccccagggcggcgttcgcttcagtgagatcgccggcg 75244 Query: 301 ctcaccgcaagttgatcgcccggattcaggggctacgcagccgcgccgccgtcggcgagg 360 | |||||| | ||| | | || || ||| ||| ||| | |||| |||| |||||||| Sbjct: 75245 cgcaccgcgcgctgaccccacgcatccagcagctccgcgggcgcgtggccggcggcgagg 75304 Query: 361 ggtgtaacatcgactactacgctctactgggcgtgcggcgcgggtgcacgcgctctgagc 420 ||| | | | ||||||||||| || || || ||||| ||||| |||||||| || |||| Sbjct: 75305 cgtgcagcgtggactactacgccctcctcggtgtgcgccgcggttgcacgcggtcggagc 75364 Query: 421 tggagcgcgcgcac 434 |||||||||||||| Sbjct: 75365 tggagcgcgcgcac 75378
>dbj|AK071235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086P13, full insert sequence Length = 2221 Score = 186 bits (94), Expect = 4e-44 Identities = 349/434 (80%) Strand = Plus / Plus Query: 1 gcgtgctcccgcacaccttcgccgccgcgtgcctcgtcggccgtgccgcctcgttccagg 60 |||||||||||||| | ||||| |||| |||||||||||||| |||| || ||| Sbjct: 906 gcgtgctcccgcacccgttcgcgaccgcctgcctcgtcggccgcgccgaggcgctccgtt 965 Query: 61 ccggcgggcgcccagcagacgccatagcagattgcaaccgtgcgctggctctcgaccctg 120 || ||||||| |||| |||||||| || || |||||||| ||||| || || ||||| | Sbjct: 966 ccagcgggcgggcagccgacgccatcgccgactgcaaccgcgcgctcgcgcttgacccgg 1025 Query: 121 cgtacatcccggcgctccgcgcccgtgccgaccttcttcagtccgtgggggcgctcagcg 180 ||| |||||||||||| ||| | || ||||||||||| |||| || ||||||||||||| Sbjct: 1026 cgttcatcccggcgctgcgctcgcgcgccgaccttctcgagtcggtaggggcgctcagcg 1085 Query: 181 attcccttcgtgaccttgaccacctcaaacttctgtacgacgcggcgctccgtgacggca 240 | | ||| || ||||| || |||||||| || || ||||||||||||||||| ||||||| Sbjct: 1086 actgcctccgcgacctggagcacctcaagctcctctacgacgcggcgctccgcgacggca 1145 Query: 241 agctgccggggcctaggtggcgaccgcagggtggtgtgcgctaccgcgagatcgccggcg 300 ||||||||||||| | ||||| || ||||| || || |||| | | ||||||||||||| Sbjct: 1146 agctgccggggccgacatggcggccccagggcggcgttcgcttcagtgagatcgccggcg 1205 Query: 301 ctcaccgcaagttgatcgcccggattcaggggctacgcagccgcgccgccgtcggcgagg 360 | |||||| | ||| | | || || ||| ||| ||| | |||| |||| |||||||| Sbjct: 1206 cgcaccgcgcgctgaccccacgcatccagcagctccgcgggcgcgtggccggcggcgagg 1265 Query: 361 ggtgtaacatcgactactacgctctactgggcgtgcggcgcgggtgcacgcgctctgagc 420 ||| | | | ||||||||||| || || || ||||| ||||| |||||||| || |||| Sbjct: 1266 cgtgcagcgtggactactacgccctcctcggtgtgcgccgcggttgcacgcggtcggagc 1325 Query: 421 tggagcgcgcgcac 434 |||||||||||||| Sbjct: 1326 tggagcgcgcgcac 1339
>gb|AE005848.1| Caulobacter crescentus CB15 section 174 of 359 of the complete genome Length = 12510 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 340 gccgcgccgccgtcggcgaggg 361 |||||||||||||||||||||| Sbjct: 229 gccgcgccgccgtcggcgaggg 250
>ref|NM_187867.1| Oryza sativa (japonica cultivar-group), Ozsa8311 predicted mRNA Length = 801 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 17 cttcgccgccgcgtgcctcgtcggc 41 |||||||| |||||||||||||||| Sbjct: 582 cttcgccgtcgcgtgcctcgtcggc 606
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 acgcagccgcgccgccgtcgg 355 ||||||||||||||||||||| Sbjct: 1307109 acgcagccgcgccgccgtcgg 1307089
>ref|XM_881169.1| PREDICTED: Bos taurus similar to thymopoietin isoform gamma, transcript variant 7 (LOC510267), mRNA Length = 2691 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 cgcagccgcgccgccgtcggc 356 ||||||||||||||||||||| Sbjct: 295 cgcagccgcgccgccgtcggc 315
>ref|XM_881151.1| PREDICTED: Bos taurus similar to thymopoietin isoform gamma, transcript variant 6 (LOC510267), mRNA Length = 2571 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 cgcagccgcgccgccgtcggc 356 ||||||||||||||||||||| Sbjct: 295 cgcagccgcgccgccgtcggc 315
>ref|XM_587394.2| PREDICTED: Bos taurus similar to thymopoietin isoform gamma, transcript variant 1 (LOC510267), mRNA Length = 2364 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 cgcagccgcgccgccgtcggc 356 ||||||||||||||||||||| Sbjct: 295 cgcagccgcgccgccgtcggc 315
>ref|XM_881096.1| PREDICTED: Bos taurus similar to thymopoietin isoform gamma, transcript variant 4 (LOC510267), mRNA Length = 2475 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 cgcagccgcgccgccgtcggc 356 ||||||||||||||||||||| Sbjct: 295 cgcagccgcgccgccgtcggc 315
>ref|XM_867965.1| PREDICTED: Bos taurus similar to thymopoietin isoform gamma, transcript variant 3 (LOC510267), mRNA Length = 3324 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 cgcagccgcgccgccgtcggc 356 ||||||||||||||||||||| Sbjct: 295 cgcagccgcgccgccgtcggc 315
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 390 ggcgtgcggcgcgggtgcacgcgct 414 |||||||||||| |||||||||||| Sbjct: 3337903 ggcgtgcggcgccggtgcacgcgct 3337879
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 acgcagccgcgccgccgtcgg 355 ||||||||||||||||||||| Sbjct: 273834 acgcagccgcgccgccgtcgg 273814
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 acgcagccgcgccgccgtcgg 355 ||||||||||||||||||||| Sbjct: 321870 acgcagccgcgccgccgtcgg 321850
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 17 cttcgccgccgcgtgcctcgtcggc 41 |||||||| |||||||||||||||| Sbjct: 8344265 cttcgccgtcgcgtgcctcgtcggc 8344289 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 gcagccgcgccgccgtcggcgagg 360 |||||| ||||||||||||||||| Sbjct: 23341250 gcagcctcgccgccgtcggcgagg 23341273
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 cggcgctccgcgcccgtgccg 150 ||||||||||||||||||||| Sbjct: 1545067 cggcgctccgcgcccgtgccg 1545047
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0434D08 Length = 161266 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 17 cttcgccgccgcgtgcctcgtcggc 41 |||||||| |||||||||||||||| Sbjct: 138196 cttcgccgtcgcgtgcctcgtcggc 138220
>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0503G09 Length = 59843 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 17 cttcgccgccgcgtgcctcgtcggc 41 |||||||| |||||||||||||||| Sbjct: 8891 cttcgccgtcgcgtgcctcgtcggc 8915
>gb|AD000020.1|MSGY348 Mycobacterium tuberculosis sequence from clone y348 Length = 40056 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 acgcagccgcgccgccgtcgg 355 ||||||||||||||||||||| Sbjct: 37135 acgcagccgcgccgccgtcgg 37115
>dbj|AB070957.1| Streptomyces avermitilis peptide-8 biosynthetic gene cluster Length = 14219 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 cggcgctccgcgcccgtgccg 150 ||||||||||||||||||||| Sbjct: 2065 cggcgctccgcgcccgtgccg 2045
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 acgacgcggcgctccgtgacggca 240 ||||||||||||||| |||||||| Sbjct: 37058 acgacgcggcgctccttgacggca 37081
>ref|NM_192621.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 909 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 gcagccgcgccgccgtcggcgagg 360 |||||| ||||||||||||||||| Sbjct: 851 gcagcctcgccgccgtcggcgagg 874
>gb|DQ145245.1| Drosophila miranda neo-Y Ih gene, partial sequence Length = 1202 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 agtccgtgggggcgctcagc 179 |||||||||||||||||||| Sbjct: 77 agtccgtgggggcgctcagc 96
>gb|DQ145244.1| Drosophila miranda neo-X Ih gene, partial sequence Length = 1214 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 agtccgtgggggcgctcagc 179 |||||||||||||||||||| Sbjct: 77 agtccgtgggggcgctcagc 96
>ref|XM_804612.1| Trypanosoma cruzi strain CL Brener translation initiation factor eIF-2B beta subunit (Tc00.1047053506865.40) partial mRNA Length = 1560 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 cggcgggcgcccagcagacg 81 |||||||||||||||||||| Sbjct: 763 cggcgggcgcccagcagacg 782
>ref|XM_809883.1| Trypanosoma cruzi strain CL Brener translation initiation factor eIF-2B beta subunit (Tc00.1047053509569.50) partial mRNA Length = 1560 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 cggcgggcgcccagcagacg 81 |||||||||||||||||||| Sbjct: 763 cggcgggcgcccagcagacg 782
>emb|AL590235.23| Human DNA sequence from clone RP11-529E10 on chromosome 4, complete sequence Length = 159246 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 agctgccggggcctaggtgg 260 |||||||||||||||||||| Sbjct: 99559 agctgccggggcctaggtgg 99540
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 gccgcgccgccgtcggcgag 359 |||||||||||||||||||| Sbjct: 2896819 gccgcgccgccgtcggcgag 2896800
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 gcggcgctccgtgacggcaagctg 245 ||||||||||| |||||||||||| Sbjct: 997538 gcggcgctccgggacggcaagctg 997561
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1103C09 Length = 163996 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 gcagccgcgccgccgtcggcgagg 360 |||||| ||||||||||||||||| Sbjct: 66948 gcagcctcgccgccgtcggcgagg 66971
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451D05 Length = 148381 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 gcagccgcgccgccgtcggcgagg 360 |||||| ||||||||||||||||| Sbjct: 127992 gcagcctcgccgccgtcggcgagg 128015
>dbj|AK066814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082F17, full insert sequence Length = 1134 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 gcagccgcgccgccgtcggcgagg 360 |||||| ||||||||||||||||| Sbjct: 911 gcagcctcgccgccgtcggcgagg 934
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 gccgcgccgccgtcggcgag 359 |||||||||||||||||||| Sbjct: 4064590 gccgcgccgccgtcggcgag 4064571
>emb|AL772204.13| Mouse DNA sequence from clone RP23-375M22 on chromosome 4, complete sequence Length = 45419 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 gcgcgcgcacttgctgctct 444 |||||||||||||||||||| Sbjct: 33744 gcgcgcgcacttgctgctct 33763
>emb|Z69362.1|HSL241B9A Human DNA sequence from clone LA04NC01-241B9 on chromosome 4, complete sequence Length = 5867 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 agctgccggggcctaggtgg 260 |||||||||||||||||||| Sbjct: 2182 agctgccggggcctaggtgg 2201 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,286,550 Number of Sequences: 3902068 Number of extensions: 2286550 Number of successful extensions: 53646 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52182 Number of HSP's gapped (non-prelim): 1464 length of query: 444 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 422 effective length of database: 17,147,199,772 effective search space: 7236118303784 effective search space used: 7236118303784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
