ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast70b03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ000693.1|HVAJ693 Hordeum vulgare mRNA for 4-hydroxyphenylpyruvate dioxygenase Length = 1565 Score = 383 bits (193), Expect = e-103 Identities = 193/193 (100%) Strand = Plus / Plus Query: 224 aggtccgacctctccacggggaactccgcgcacgcctcccagctgctccgctcgggctcc 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 216 aggtccgacctctccacggggaactccgcgcacgcctcccagctgctccgctcgggctcc 275 Query: 284 ctcgccttcctcttcaccgcgccctacgccaacggctgcgacgccgccaccgcctccctg 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 276 ctcgccttcctcttcaccgcgccctacgccaacggctgcgacgccgccaccgcctccctg 335 Query: 344 ccctccttctccgccgacgccgcgcgccggttctccgccgaccacgggatcgcggtgcgc 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 336 ccctccttctccgccgacgccgcgcgccggttctccgccgaccacgggatcgcggtgcgc 395 Query: 404 tccgtagcgctgc 416 ||||||||||||| Sbjct: 396 tccgtagcgctgc 408 Score = 303 bits (153), Expect = 2e-79 Identities = 153/153 (100%) Strand = Plus / Plus Query: 9 cgcacaccatgccgcccacccccaccacccccgcggctaccggcgccgccgccgcggtga 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cgcacaccatgccgcccacccccaccacccccgcggctaccggcgccgccgccgcggtga 60 Query: 69 cgccggagcacgcgcgaccgcaccgaatggtccgcttcaacccgcgcagcgaccgcttcc 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cgccggagcacgcgcgaccgcaccgaatggtccgcttcaacccgcgcagcgaccgcttcc 120 Query: 129 acacgctctccttccaccacgtcgagttctggt 161 ||||||||||||||||||||||||||||||||| Sbjct: 121 acacgctctccttccaccacgtcgagttctggt 153
>gb|DQ139267.1| Triticum aestivum 4-hydroxyphenylpyruvate dioxygenase mRNA, complete cds Length = 1588 Score = 311 bits (157), Expect = 1e-81 Identities = 184/193 (95%) Strand = Plus / Plus Query: 224 aggtccgacctctccacggggaactccgcgcacgcctcccagctgctccgctcgggctcc 283 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct: 232 aggtccgacctctccacggggaactccgtgcacgcctcccagctgctccgctcgggcaac 291 Query: 284 ctcgccttcctcttcaccgcgccctacgccaacggctgcgacgccgccaccgcctccctg 343 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 292 ctcgccttcctcttcaccgcgccctacgcgaacggctgcgacgccgccaccgcctccctg 351 Query: 344 ccctccttctccgccgacgccgcgcgccggttctccgccgaccacgggatcgcggtgcgc 403 |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| Sbjct: 352 ccctccttctccgccgacgccgcgcgccggttctccgcggaccacgggctcgcagtgcgc 411 Query: 404 tccgtagcgctgc 416 ||| |||| |||| Sbjct: 412 tccatagcactgc 424 Score = 246 bits (124), Expect = 5e-62 Identities = 156/167 (93%), Gaps = 6/167 (3%) Strand = Plus / Plus Query: 1 gaagcgaacgcacaccatgccgcccacccccaccacccccgcggctaccggcgccg---- 56 ||||||||| |||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 3 gaagcgaacacacaccatgccgcccacccccaccacccccgcagccaccggcgccggcgc 62 Query: 57 --ccgccgcggtgacgccggagcacgcgcgaccgcaccgaatggtccgcttcaacccgcg 114 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 63 tgccgccgcggtgacgccggagcacgcgcggccgcgccgaatggtccgcttcaacccgcg 122 Query: 115 cagcgaccgcttccacacgctctccttccaccacgtcgagttctggt 161 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 cagcgaccgcttccacacgctctccttccaccacgtcgagttctggt 169
>gb|BT009036.1| Triticum aestivum clone wdk4c.pk006.m9:fis, full insert mRNA sequence Length = 1614 Score = 303 bits (153), Expect = 2e-79 Identities = 183/193 (94%) Strand = Plus / Plus Query: 224 aggtccgacctctccacggggaactccgcgcacgcctcccagctgctccgctcgggctcc 283 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct: 231 aggtccgacctctccacggggaactccgtgcacgcctcccagctgctccgctcgggcaac 290 Query: 284 ctcgccttcctcttcaccgcgccctacgccaacggctgcgacgccgccaccgcctccctg 343 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 291 ctcgccttcctcttcacggccccctacgccaacggctgcgacgccgccaccgcctccctg 350 Query: 344 ccctccttctccgccgacgccgcgcgccggttctccgccgaccacgggatcgcggtgcgc 403 |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| Sbjct: 351 ccctccttctccgccgacgccgcgcgccagttctccgcggaccacggcctcgcggtgcgc 410 Query: 404 tccgtagcgctgc 416 ||| ||||||||| Sbjct: 411 tccatagcgctgc 423 Score = 244 bits (123), Expect = 2e-61 Identities = 152/161 (94%), Gaps = 3/161 (1%) Strand = Plus / Plus Query: 1 gaagcgaacgcacaccatgccgcccacccccaccacccccgcggctaccggcgccgccgc 60 ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 11 gaagcgaacacacaccatgccgcccacccccaccacccccgcagccaccggcgccgccgc 70 Query: 61 cgcggtgacgccggagcacgcgcgaccgcaccgaatggtccgcttcaacccgcgcagcga 120 ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 71 ---ggtgacgccggagcacgcgcggccgcgccgaatggtccgcttcaacccgcgcagcga 127 Query: 121 ccgcttccacacgctctccttccaccacgtcgagttctggt 161 |||||||||||||||| |||||||||||||||||||||||| Sbjct: 128 ccgcttccacacgctcgccttccaccacgtcgagttctggt 168
>ref|XM_464255.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1341 Score = 111 bits (56), Expect = 2e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 224 aggtccgacctctccacggggaactccgcgcacgcctcccagctgctccgctcgggctcc 283 |||||||||||||||||||||||||||||||||||||||| || |||||||| | |||| Sbjct: 229 aggtccgacctctccacggggaactccgcgcacgcctccctcctcctccgctccgcctcc 288 Query: 284 ctcgccttcctcttcaccgcgccctacg 311 |||| |||||||||||||| ||||||| Sbjct: 289 gtcgcgttcctcttcaccgccccctacg 316 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 106 caacccgcgcagcgaccgcttccacacgctctccttccaccacgtcgagttctggt 161 ||||||||| |||||||| ||||| ||||| | ||||||||||||||| |||||| Sbjct: 111 caacccgcggagcgaccggttccaggcgctcgcgttccaccacgtcgagctctggt 166 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 330 ccaccgcctccctgccctccttctccgccgacgccgcgcgccggttctccgccgaccacg 389 ||||||||||| | || ||||||||| | | ||||||||| ||||| |||| ||||||| Sbjct: 350 ccaccgcctccatcccttccttctccccaggcgccgcgcggaggttcgccgcggaccacg 409 Query: 390 ggatcgcggtgcgctccgtagcgctgc 416 | ||||||||| | |||| ||||||| Sbjct: 410 gcctcgcggtgcacgccgtggcgctgc 436
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 111 bits (56), Expect = 2e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 224 aggtccgacctctccacggggaactccgcgcacgcctcccagctgctccgctcgggctcc 283 |||||||||||||||||||||||||||||||||||||||| || |||||||| | |||| Sbjct: 3679656 aggtccgacctctccacggggaactccgcgcacgcctccctcctcctccgctccgcctcc 3679597 Query: 284 ctcgccttcctcttcaccgcgccctacg 311 |||| |||||||||||||| ||||||| Sbjct: 3679596 gtcgcgttcctcttcaccgccccctacg 3679569 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 106 caacccgcgcagcgaccgcttccacacgctctccttccaccacgtcgagttctggt 161 ||||||||| |||||||| ||||| ||||| | ||||||||||||||| |||||| Sbjct: 3679774 caacccgcggagcgaccggttccaggcgctcgcgttccaccacgtcgagctctggt 3679719 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 330 ccaccgcctccctgccctccttctccgccgacgccgcgcgccggttctccgccgaccacg 389 ||||||||||| | || ||||||||| | | ||||||||| ||||| |||| ||||||| Sbjct: 3679535 ccaccgcctccatcccttccttctccccaggcgccgcgcggaggttcgccgcggaccacg 3679476 Query: 390 ggatcgcggtgcgctccgtagcgctgc 416 | ||||||||| | |||| ||||||| Sbjct: 3679475 gcctcgcggtgcacgccgtggcgctgc 3679449 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 cccgcggctaccggcgccgccgcc 61 ||||||||||||| |||||||||| Sbjct: 21327542 cccgcggctaccgccgccgccgcc 21327565 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 tgcgacgccgccaccgcctc 339 |||||||||||||||||||| Sbjct: 795886 tgcgacgccgccaccgcctc 795905
>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0669G09 Length = 140067 Score = 111 bits (56), Expect = 2e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 224 aggtccgacctctccacggggaactccgcgcacgcctcccagctgctccgctcgggctcc 283 |||||||||||||||||||||||||||||||||||||||| || |||||||| | |||| Sbjct: 19973 aggtccgacctctccacggggaactccgcgcacgcctccctcctcctccgctccgcctcc 19914 Query: 284 ctcgccttcctcttcaccgcgccctacg 311 |||| |||||||||||||| ||||||| Sbjct: 19913 gtcgcgttcctcttcaccgccccctacg 19886 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 106 caacccgcgcagcgaccgcttccacacgctctccttccaccacgtcgagttctggt 161 ||||||||| |||||||| ||||| ||||| | ||||||||||||||| |||||| Sbjct: 20091 caacccgcggagcgaccggttccaggcgctcgcgttccaccacgtcgagctctggt 20036 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 330 ccaccgcctccctgccctccttctccgccgacgccgcgcgccggttctccgccgaccacg 389 ||||||||||| | || ||||||||| | | ||||||||| ||||| |||| ||||||| Sbjct: 19852 ccaccgcctccatcccttccttctccccaggcgccgcgcggaggttcgccgcggaccacg 19793 Query: 390 ggatcgcggtgcgctccgtagcgctgc 416 | ||||||||| | |||| ||||||| Sbjct: 19792 gcctcgcggtgcacgccgtggcgctgc 19766
>dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21 Length = 180714 Score = 111 bits (56), Expect = 2e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 224 aggtccgacctctccacggggaactccgcgcacgcctcccagctgctccgctcgggctcc 283 |||||||||||||||||||||||||||||||||||||||| || |||||||| | |||| Sbjct: 160946 aggtccgacctctccacggggaactccgcgcacgcctccctcctcctccgctccgcctcc 160887 Query: 284 ctcgccttcctcttcaccgcgccctacg 311 |||| |||||||||||||| ||||||| Sbjct: 160886 gtcgcgttcctcttcaccgccccctacg 160859 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 106 caacccgcgcagcgaccgcttccacacgctctccttccaccacgtcgagttctggt 161 ||||||||| |||||||| ||||| ||||| | ||||||||||||||| |||||| Sbjct: 161064 caacccgcggagcgaccggttccaggcgctcgcgttccaccacgtcgagctctggt 161009 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 330 ccaccgcctccctgccctccttctccgccgacgccgcgcgccggttctccgccgaccacg 389 ||||||||||| | || ||||||||| | | ||||||||| ||||| |||| ||||||| Sbjct: 160825 ccaccgcctccatcccttccttctccccaggcgccgcgcggaggttcgccgcggaccacg 160766 Query: 390 ggatcgcggtgcgctccgtagcgctgc 416 | ||||||||| | |||| ||||||| Sbjct: 160765 gcctcgcggtgcacgccgtggcgctgc 160739
>emb|AJ309203.1|CBL309203 Coleus blumei mRNA for 4-hydroxyphenylpyruvate dioxygenase (hppd_SOLSC gene) Length = 1657 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 227 tccgacctctccacggggaactccgcgcacgcctcccagctgctccgctc 276 |||||||||||||| |||||||| || ||||||||| | || |||||||| Sbjct: 374 tccgacctctccaccgggaactctgcccacgcctcctatctcctccgctc 423
>ref|XM_516824.1| PREDICTED: Pan troglodytes similar to RAP2B, member of RAS oncogene family (LOC460789), mRNA Length = 856 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 325 cgccgccaccgcctccctgccctcc 349 ||||||||||||||||||||||||| Sbjct: 119 cgccgccaccgcctccctgccctcc 143
>ref|NM_002886.2| Homo sapiens RAP2B, member of RAS oncogene family (RAP2B), mRNA Length = 6237 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 325 cgccgccaccgcctccctgccctcc 349 ||||||||||||||||||||||||| Sbjct: 101 cgccgccaccgcctccctgccctcc 125
>gb|AC117394.10| Homo sapiens 3 BAC RP11-529G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198170 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 325 cgccgccaccgcctccctgccctcc 349 ||||||||||||||||||||||||| Sbjct: 73405 cgccgccaccgcctccctgccctcc 73381
>emb|AJ330592.1|HSA330592 Homo sapiens genomic sequence surrounding NotI site, clone NL1-AA13R Length = 718 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 325 cgccgccaccgcctccctgccctcc 349 ||||||||||||||||||||||||| Sbjct: 210 cgccgccaccgcctccctgccctcc 234
>gb|BC012362.1| Homo sapiens RAP2B, member of RAS oncogene family, mRNA (cDNA clone MGC:20484 IMAGE:4650072), complete cds Length = 1913 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 325 cgccgccaccgcctccctgccctcc 349 ||||||||||||||||||||||||| Sbjct: 71 cgccgccaccgcctccctgccctcc 95
>emb|BX511250.8| Zebrafish DNA sequence from clone CH211-57K11 in linkage group 16, complete sequence Length = 189081 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 13 caccatgccgcccacccccaccac 36 |||||||||||||||||||||||| Sbjct: 65755 caccatgccgcccacccccaccac 65732
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 41 gcggctaccggcgccgccgccgcg 64 |||||||||||||||||||||||| Sbjct: 26732719 gcggctaccggcgccgccgccgcg 26732696 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 gctgcgacgccgccaccgcctccc 341 ||||| |||||||||||||||||| Sbjct: 16598944 gctgccacgccgccaccgcctccc 16598967 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ctaccggcgccgccgccgcg 64 |||||||||||||||||||| Sbjct: 6964902 ctaccggcgccgccgccgcg 6964883
>dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1047G05 Length = 145431 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 41 gcggctaccggcgccgccgccgcg 64 |||||||||||||||||||||||| Sbjct: 90182 gcggctaccggcgccgccgccgcg 90159
>gb|AY957391.1| Medicago truncatula 4-hydroxyphenylpyruvate dioxygenase (HPD) mRNA, complete cds Length = 1630 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Plus Query: 139 cttccaccacgtcgagttctggt 161 ||||||||||||||||||||||| Sbjct: 141 cttccaccacgtcgagttctggt 163
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 cctcgccttcctcttcaccgcg 304 |||||||||||||||||||||| Sbjct: 80727 cctcgccttcctcttcaccgcg 80706
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 37 ccccgcggctaccggcgccgccgccg 62 |||||||||| ||||||||||||||| Sbjct: 26868856 ccccgcggcttccggcgccgccgccg 26868881
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete sequence Length = 149303 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 37 ccccgcggctaccggcgccgccgccg 62 |||||||||| ||||||||||||||| Sbjct: 47856 ccccgcggcttccggcgccgccgccg 47881
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16 Length = 346879 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 ggctgcgacgccgccaccgcct 338 |||||||||||||||||||||| Sbjct: 192181 ggctgcgacgccgccaccgcct 192160
>emb|AL606689.4|OSJN00078 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042N22, complete sequence Length = 152676 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 44 gctaccggcgccgccgccgcgg 65 |||||||||||||||||||||| Sbjct: 32079 gctaccggcgccgccgccgcgg 32058
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 44 gctaccggcgccgccgccgcgg 65 |||||||||||||||||||||| Sbjct: 1511913 gctaccggcgccgccgccgcgg 1511892 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 cgacgccgccaccgcctccc 341 |||||||||||||||||||| Sbjct: 11455163 cgacgccgccaccgcctccc 11455144
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 cgcccacccccaccacccccgc 42 |||||||||||||||||||||| Sbjct: 8773367 cgcccacccccaccacccccgc 8773346 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 cggctaccggcgccgccgccgcgg 65 |||||||||||||||||| ||||| Sbjct: 20889565 cggctaccggcgccgccggcgcgg 20889588 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 cgacgccgccaccgcctccc 341 |||||||||||||||||||| Sbjct: 7723498 cgacgccgccaccgcctccc 7723517 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 32 accacccccgcggctaccggcgccgccgccgc 63 ||||| || ||||| ||||||||||||||||| Sbjct: 3704064 accacgccggcggccaccggcgccgccgccgc 3704033
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 cctcgccttcctcttcaccgcg 304 |||||||||||||||||||||| Sbjct: 19480015 cctcgccttcctcttcaccgcg 19479994 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 327 ccgccaccgcctccctgccctccttctccgcc 358 ||||||||||||||| | |||||||| ||||| Sbjct: 16728086 ccgccaccgcctccccgtcctccttcgccgcc 16728055 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 cccgcggctaccggcgccgccgcc 61 ||||||||||||| |||||||||| Sbjct: 7133672 cccgcggctaccgccgccgccgcc 7133649
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 37 ccccgcggctaccggcgccgccgccg 62 |||||||||| ||||||||||||||| Sbjct: 26960179 ccccgcggcttccggcgccgccgccg 26960204
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 325 cgccgccaccgcctccctgccc 346 |||||||||||||||||||||| Sbjct: 5319184 cgccgccaccgcctccctgccc 5319205
>dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0039C01 Length = 151054 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 cgcccacccccaccacccccgc 42 |||||||||||||||||||||| Sbjct: 132008 cgcccacccccaccacccccgc 131987
>dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0458G06 Length = 139109 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 cgcccacccccaccacccccgc 42 |||||||||||||||||||||| Sbjct: 3467 cgcccacccccaccacccccgc 3446
>dbj|AP006347.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02G18, TM0334a, complete sequence Length = 77969 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 342 tgccctccttctccgccgacgc 363 |||||||||||||||||||||| Sbjct: 69176 tgccctccttctccgccgacgc 69155
>ref|XM_483426.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 ggcgccgccgccgcggtgacg 70 ||||||||||||||||||||| Sbjct: 695 ggcgccgccgccgcggtgacg 675
>ref|NM_197511.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0053C23.15), mRNA Length = 549 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 cggcgccgccgccgcggtgac 69 ||||||||||||||||||||| Sbjct: 291 cggcgccgccgccgcggtgac 311
>ref|NM_197310.1| Oryza sativa (japonica cultivar-group) putative serine peptidase (OSJNBa0055O03.8), mRNA Length = 1509 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 55 cgccgccgcggtgacgccggagcac 79 |||||||| |||||||||||||||| Sbjct: 372 cgccgccgtggtgacgccggagcac 396
>ref|NM_184579.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1770 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 gccgcccacccccaccacccc 39 ||||||||||||||||||||| Sbjct: 23 gccgcccacccccaccacccc 3
>ref|XM_977082.1| PREDICTED: Mus musculus PR domain containing 13, transcript variant 1 (Prdm13), mRNA Length = 3458 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 325 cgccgccaccgcctccctgccctcc 349 |||||||||| |||||||||||||| Sbjct: 1565 cgccgccaccacctccctgccctcc 1589
>ref|XM_977119.1| PREDICTED: Mus musculus PR domain containing 13, transcript variant 2 (Prdm13), mRNA Length = 3108 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 325 cgccgccaccgcctccctgccctcc 349 |||||||||| |||||||||||||| Sbjct: 1215 cgccgccaccacctccctgccctcc 1239
>ref|XM_920394.2| PREDICTED: Mus musculus PR domain containing 13, transcript variant 4 (Prdm13), mRNA Length = 3476 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 325 cgccgccaccgcctccctgccctcc 349 |||||||||| |||||||||||||| Sbjct: 1583 cgccgccaccacctccctgccctcc 1607
>ref|XM_907402.2| PREDICTED: Mus musculus PR domain containing 13, transcript variant 3 (Prdm13), mRNA Length = 3126 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 325 cgccgccaccgcctccctgccctcc 349 |||||||||| |||||||||||||| Sbjct: 1233 cgccgccaccacctccctgccctcc 1257
>ref|XM_131309.6| PREDICTED: Mus musculus PR domain containing 13, transcript variant 1 (Prdm13), mRNA Length = 3458 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 325 cgccgccaccgcctccctgccctcc 349 |||||||||| |||||||||||||| Sbjct: 1565 cgccgccaccacctccctgccctcc 1589
>ref|XM_884367.2| PREDICTED: Mus musculus PR domain containing 13, transcript variant 2 (Prdm13), mRNA Length = 3108 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 325 cgccgccaccgcctccctgccctcc 349 |||||||||| |||||||||||||| Sbjct: 1215 cgccgccaccacctccctgccctcc 1239
>gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete sequence Length = 82909 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 55 cgccgccgcggtgacgccggagcac 79 |||||||| |||||||||||||||| Sbjct: 21155 cgccgccgtggtgacgccggagcac 21179
>gb|BC017632.1| Mus musculus PR domain containing 13, mRNA (cDNA clone IMAGE:4507465), containing frame-shift errors Length = 3271 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 325 cgccgccaccgcctccctgccctcc 349 |||||||||| |||||||||||||| Sbjct: 1565 cgccgccaccacctccctgccctcc 1589
>emb|AL596451.4| Human DNA sequence from clone RP11-75C9 on chromosome 9 Contains 2 novel genes, complete sequence Length = 130513 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gcccacccccaccacccccgc 42 ||||||||||||||||||||| Sbjct: 72399 gcccacccccaccacccccgc 72419
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 tccttccaccacgtcgagttc 157 ||||||||||||||||||||| Sbjct: 149026 tccttccaccacgtcgagttc 149046
>gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence Length = 132900 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 cggcgccgccgccgcggtgac 69 ||||||||||||||||||||| Sbjct: 7847 cggcgccgccgccgcggtgac 7827
>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence Length = 194361 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 cggcgccgccgccgcggtgac 69 ||||||||||||||||||||| Sbjct: 36379 cggcgccgccgccgcggtgac 36399
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 ccgccgcggtgacgccggagc 77 ||||||||||||||||||||| Sbjct: 2326928 ccgccgcggtgacgccggagc 2326908 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 36 cccccgcggctaccggcgccgccgccgc 63 |||| |||||||||| |||||||||||| Sbjct: 3182117 ccccagcggctaccgccgccgccgccgc 3182144
>emb|AL672159.14| Mouse DNA sequence from clone RP23-145B5 on chromosome 4, complete sequence Length = 101291 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 325 cgccgccaccgcctccctgccctcc 349 |||||||||| |||||||||||||| Sbjct: 61520 cgccgccaccacctccctgccctcc 61496
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 53 gccgccgccgcggtgacgccggagc 77 |||||||||||||||||||| |||| Sbjct: 1742645 gccgccgccgcggtgacgcccgagc 1742669
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 cggcgccgccgccgcggtgac 69 ||||||||||||||||||||| Sbjct: 20158644 cggcgccgccgccgcggtgac 20158664 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 55 cgccgccgcggtgacgccggagcac 79 |||||||| |||||||||||||||| Sbjct: 19168811 cgccgccgtggtgacgccggagcac 19168835
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 ggcgccgccgccgcggtgacg 70 ||||||||||||||||||||| Sbjct: 26154781 ggcgccgccgccgcggtgacg 26154761 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 cgacgccgccaccgcctccc 341 |||||||||||||||||||| Sbjct: 9839385 cgacgccgccaccgcctccc 9839404 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 cccgcggctaccggcgccgccgcc 61 ||||||||||||| |||||||||| Sbjct: 6311255 cccgcggctaccgccgccgccgcc 6311232
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 gccgcccacccccaccacccc 39 ||||||||||||||||||||| Sbjct: 16310331 gccgcccacccccaccacccc 16310351 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 cgcggctaccggcgccgccgccgc 63 |||||| ||||||||||||||||| Sbjct: 35026504 cgcggcgaccggcgccgccgccgc 35026527 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 cccgcggctaccggcgccgccgcc 61 ||||||||||||| |||||||||| Sbjct: 24039561 cccgcggctaccgccgccgccgcc 24039584 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 345 cctccttctccgccgacgccgcgcgccg 372 |||||| | ||||||||||||||||||| Sbjct: 21064827 cctcctccgccgccgacgccgcgcgccg 21064854 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 345 cctccttctccgccgacgccgcgcgccg 372 ||||||||||||||| ||||| |||||| Sbjct: 12164274 cctccttctccgccgccgccgggcgccg 12164247
>dbj|AB089954.1| Micromonospora griseorubida gene cluster for the polyketide macrolide mycinamicin, partial and comeplete cds Length = 58343 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 ccctcgccttcctcttcaccg 302 ||||||||||||||||||||| Sbjct: 15727 ccctcgccttcctcttcaccg 15747
>gb|AC156453.2| Volvox carteri clone JGIAOBO-9A1, complete sequence Length = 34624 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 38 cccgcggctaccggcgccgccgccg 62 ||||| ||||||||||||||||||| Sbjct: 33982 cccgccgctaccggcgccgccgccg 33958
>gb|AC097468.3| Homo sapiens BAC clone RP11-33O4 from 2, complete sequence Length = 169741 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 15 ccatgccgcccacccccaccacccc 39 ||||||||||||||||| ||||||| Sbjct: 76657 ccatgccgcccaccccccccacccc 76681
>dbj|AP006237.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008D07 Length = 156874 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 gccgcccacccccaccacccc 39 ||||||||||||||||||||| Sbjct: 72408 gccgcccacccccaccacccc 72428
>gb|AY823511.1| Ichthyomyzon gagei peptide YY (PYY) mRNA, complete cds Length = 929 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 cctcgccttcctcttcaccgc 303 ||||||||||||||||||||| Sbjct: 406 cctcgccttcctcttcaccgc 426
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 ggcgccgccgccgcggtgacg 70 ||||||||||||||||||||| Sbjct: 98712 ggcgccgccgccgcggtgacg 98692
>dbj|AK106313.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D07, full insert sequence Length = 1346 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 cggcgccgccgccgcggtgac 69 ||||||||||||||||||||| Sbjct: 922 cggcgccgccgccgcggtgac 942
>dbj|AK073197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022B10, full insert sequence Length = 2075 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 55 cgccgccgcggtgacgccggagcac 79 |||||||| |||||||||||||||| Sbjct: 408 cgccgccgtggtgacgccggagcac 432
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 cgcacaccatgccgcccaccc 29 ||||||||||||||||||||| Sbjct: 4672916 cgcacaccatgccgcccaccc 4672936 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 cgccgcggtgacgccggagca 78 ||||||||||||||||||||| Sbjct: 4383851 cgccgcggtgacgccggagca 4383871 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cgacgccgcgcgccggttct 377 |||||||||||||||||||| Sbjct: 4111330 cgacgccgcgcgccggttct 4111349 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ccgcctccctgccctccttc 352 |||||||||||||||||||| Sbjct: 931437 ccgcctccctgccctccttc 931456
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 cggcgccgccgccgcggtgac 69 ||||||||||||||||||||| Sbjct: 20169920 cggcgccgccgccgcggtgac 20169940 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 55 cgccgccgcggtgacgccggagcac 79 |||||||| |||||||||||||||| Sbjct: 19180087 cgccgccgtggtgacgccggagcac 19180111
>dbj|AB017641.1| Micromonospora griseorubida gene for polyketide synthase, complete cds Length = 17101 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 ccctcgccttcctcttcaccg 302 ||||||||||||||||||||| Sbjct: 9341 ccctcgccttcctcttcaccg 9361
>ref|XM_481097.1| Oryza sativa (japonica cultivar-group), mRNA Length = 252 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 cgacgccgccaccgcctccc 341 |||||||||||||||||||| Sbjct: 229 cgacgccgccaccgcctccc 210
>ref|XM_480632.1| Oryza sativa (japonica cultivar-group), mRNA Length = 414 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 cccgcggctaccggcgccgccgcc 61 ||||||||||||| |||||||||| Sbjct: 170 cccgcggctaccgccgccgccgcc 147
>ref|XM_463866.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1215 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 tgcgacgccgccaccgcctc 339 |||||||||||||||||||| Sbjct: 395 tgcgacgccgccaccgcctc 376
>ref|NM_183770.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 405 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 345 cctccttctccgccgacgccgcgcgccg 372 ||||||||||||||| ||||| |||||| Sbjct: 379 cctccttctccgccgccgccgggcgccg 352
>ref|NM_190356.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1077 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 cgcggctaccggcgccgccgccgc 63 |||||| ||||||||||||||||| Sbjct: 918 cgcggcgaccggcgccgccgccgc 895
>ref|NM_192723.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 744 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 cccgcggctaccggcgccgccgcc 61 ||||||||||||| |||||||||| Sbjct: 530 cccgcggctaccgccgccgccgcc 507
>ref|NM_193472.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1578 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 345 cctccttctccgccgacgccgcgcgccg 372 |||||| | ||||||||||||||||||| Sbjct: 399 cctcctccgccgccgacgccgcgcgccg 426
>ref|XM_478539.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1971 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 cggctaccggcgccgccgccgcgg 65 |||||||||||||||||| ||||| Sbjct: 167 cggctaccggcgccgccggcgcgg 190
>ref|XM_477209.1| Oryza sativa (japonica cultivar-group), mRNA Length = 423 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 cgacgccgccaccgcctccc 341 |||||||||||||||||||| Sbjct: 337 cgacgccgccaccgcctccc 318
>ref|XM_476739.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2008 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 32 accacccccgcggctaccggcgccgccgccgc 63 ||||| || ||||| ||||||||||||||||| Sbjct: 1800 accacgccggcggccaccggcgccgccgccgc 1769
>ref|XM_506182.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0050F10.9 mRNA Length = 2205 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 32 accacccccgcggctaccggcgccgccgccgc 63 ||||| || ||||| ||||||||||||||||| Sbjct: 1861 accacgccggcggccaccggcgccgccgccgc 1830
>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12, complete sequence Length = 145517 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 327 ccgccaccgcctccctgccctccttctccgcc 358 ||||||||||||||| | |||||||| ||||| Sbjct: 52196 ccgccaccgcctccccgtcctccttcgccgcc 52165
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cttccacacgctctccttcc 143 |||||||||||||||||||| Sbjct: 2157639 cttccacacgctctccttcc 2157658
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gcgccgccgccgcggtgacg 70 |||||||||||||||||||| Sbjct: 1025140 gcgccgccgccgcggtgacg 1025121
>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08, complete sequence Length = 148348 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 cccgcggctaccggcgccgccgcc 61 ||||||||||||| |||||||||| Sbjct: 88521 cccgcggctaccgccgccgccgcc 88498
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 gcgccgccgccgcggtgacg 70 |||||||||||||||||||| Sbjct: 2540548 gcgccgccgccgcggtgacg 2540567
>gb|AC122407.4| Mus musculus BAC clone RP24-129G24 from chromosome 12, complete sequence Length = 137860 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cccacccccaccacccccgc 42 |||||||||||||||||||| Sbjct: 39565 cccacccccaccacccccgc 39546
>emb|CR727067.2|CNS0GNY9 Tetraodon nigroviridis full-length cDNA Length = 1414 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 cctccctgccctccttctcc 355 |||||||||||||||||||| Sbjct: 865 cctccctgccctccttctcc 846
>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence Length = 452156 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 accggcgccgccgccgcggt 66 |||||||||||||||||||| Sbjct: 440533 accggcgccgccgccgcggt 440514
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ccttccaccacgtcgagttc 157 |||||||||||||||||||| Sbjct: 1641154 ccttccaccacgtcgagttc 1641173
>gb|DQ115822.1| Cyanobacteria phage AS-1 contig_15 genomic sequence Length = 1643 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 accggcgccgccgccgcggt 66 |||||||||||||||||||| Sbjct: 917 accggcgccgccgccgcggt 898
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gcgccgccgccgcggtgacg 70 |||||||||||||||||||| Sbjct: 1841963 gcgccgccgccgcggtgacg 1841944
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 ccgcggctaccggcgccgccgccgcggt 66 ||||||| ||||||||||||||||||| Sbjct: 7593 ccgcggccgccggcgccgccgccgcggt 7620
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 ccaccacccccgcggctacc 49 |||||||||||||||||||| Sbjct: 85311 ccaccacccccgcggctacc 85330
>gb|AE012101.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 9 of 460 of the complete genome Length = 10710 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 cgccgccgccgcggtgacgc 71 |||||||||||||||||||| Sbjct: 7221 cgccgccgccgcggtgacgc 7240
>gb|DQ406744.1| Volvox carteri f. nagariensis Met1 (met1) gene, complete cds Length = 29854 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ccacccccaccacccccgcg 43 |||||||||||||||||||| Sbjct: 21149 ccacccccaccacccccgcg 21168
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gctaccggcgccgccgccgc 63 |||||||||||||||||||| Sbjct: 1617515 gctaccggcgccgccgccgc 1617534
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 47 accggcgccgccgccgcggtgacgccgg 74 |||||| ||||||||| ||||||||||| Sbjct: 597828 accggcaccgccgccgaggtgacgccgg 597855
>gb|AC152059.4| Mus musculus BAC clone RP24-283B23 from chromosome 12, complete sequence Length = 180085 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 cccacccccaccacccccgc 42 |||||||||||||||||||| Sbjct: 54333 cccacccccaccacccccgc 54352
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 cgccgccgccgcggtgacgc 71 |||||||||||||||||||| Sbjct: 92772 cgccgccgccgcggtgacgc 92791
>dbj|AP006229.1| Chirocentrus dorab mitochondrial DNA, almost complete genome Length = 15989 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 gcccacccccaccacccccg 41 |||||||||||||||||||| Sbjct: 4158 gcccacccccaccacccccg 4177
>dbj|AB088409.1| Triticum aestivum 1-FFT-A mRNA for fructan:fructan 1-fructosyltransferase, complete cds Length = 2304 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 ctgccctccttctccgccgacgcc 364 |||||||||| ||||||||||||| Sbjct: 148 ctgccctcctcctccgccgacgcc 171
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 cgccgccgcggtgacgccggagca 78 ||||||||||| |||||||||||| Sbjct: 2783543 cgccgccgcggcgacgccggagca 2783566
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 345 cctccttctccgccgacgccgcgcgccg 372 |||||| | ||||||||||||||||||| Sbjct: 32372 cctcctccgccgccgacgccgcgcgccg 32399
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 cccgcggctaccggcgccgccgcc 61 ||||||||||||| |||||||||| Sbjct: 15383 cccgcggctaccgccgccgccgcc 15406
>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1014_G12 Length = 158830 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 345 cctccttctccgccgacgccgcgcgccg 372 |||||| | ||||||||||||||||||| Sbjct: 128029 cctcctccgccgccgacgccgcgcgccg 128056
>dbj|AP006753.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0039D04 Length = 184408 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 cggctaccggcgccgccgccgcgg 65 |||||||||||||||||| ||||| Sbjct: 100355 cggctaccggcgccgccggcgcgg 100378
>dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485B12 Length = 156047 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 cgcggctaccggcgccgccgccgc 63 |||||| ||||||||||||||||| Sbjct: 33654 cgcggcgaccggcgccgccgccgc 33677
>dbj|AP003302.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0703B11 Length = 144074 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 cgcggctaccggcgccgccgccgc 63 |||||| ||||||||||||||||| Sbjct: 70732 cgcggcgaccggcgccgccgccgc 70755
>dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0583E12 Length = 152449 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 gctgcgacgccgccaccgcctccc 341 ||||| |||||||||||||||||| Sbjct: 94924 gctgccacgccgccaccgcctccc 94947
>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1442_E05 Length = 162407 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 tgcgacgccgccaccgcctc 339 |||||||||||||||||||| Sbjct: 5094 tgcgacgccgccaccgcctc 5113
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 tgcgacgccgccaccgcctc 339 |||||||||||||||||||| Sbjct: 74017 tgcgacgccgccaccgcctc 74036
>dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1153F04 Length = 158174 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 345 cctccttctccgccgacgccgcgcgccg 372 ||||||||||||||| ||||| |||||| Sbjct: 131214 cctccttctccgccgccgccgggcgccg 131187
>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0061B07 Length = 124766 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ctaccggcgccgccgccgcg 64 |||||||||||||||||||| Sbjct: 24329 ctaccggcgccgccgccgcg 24310
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 32 accacccccgcggctaccggcgccgccgccgc 63 ||||| || ||||| ||||||||||||||||| Sbjct: 48415 accacgccggcggccaccggcgccgccgccgc 48384
>dbj|AP005194.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0565A07 Length = 152191 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 cgacgccgccaccgcctccc 341 |||||||||||||||||||| Sbjct: 67587 cgacgccgccaccgcctccc 67606
>dbj|AP003811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1131_E05 Length = 122216 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 cggctaccggcgccgccgccgcgg 65 |||||||||||||||||| ||||| Sbjct: 17480 cggctaccggcgccgccggcgcgg 17503
>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0435E12 Length = 143188 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 cccgcggctaccggcgccgccgcc 61 ||||||||||||| |||||||||| Sbjct: 110077 cccgcggctaccgccgccgccgcc 110100
>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1734_E04 Length = 101439 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 cccgcggctaccggcgccgccgcc 61 ||||||||||||| |||||||||| Sbjct: 97392 cccgcggctaccgccgccgccgcc 97369
>dbj|AP005095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1063H10 Length = 170453 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 cgacgccgccaccgcctccc 341 |||||||||||||||||||| Sbjct: 103317 cgacgccgccaccgcctccc 103336
>gb|AC006445.11|AC006445 Homo sapiens chromosome 4 clone C0367I21, complete sequence Length = 174547 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 ccgcggctaccggcgccgccgccg 62 |||||||||||| ||||||||||| Sbjct: 107938 ccgcggctaccgccgccgccgccg 107961
>dbj|AK107049.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C12, full insert sequence Length = 1677 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 345 cctccttctccgccgacgccgcgcgccg 372 |||||| | ||||||||||||||||||| Sbjct: 211 cctcctccgccgccgacgccgcgcgccg 238
>dbj|AK105668.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-H12, full insert sequence Length = 2008 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 32 accacccccgcggctaccggcgccgccgccgc 63 ||||| || ||||| ||||||||||||||||| Sbjct: 1800 accacgccggcggccaccggcgccgccgccgc 1769
>dbj|AK068262.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149M23, full insert sequence Length = 2205 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 32 accacccccgcggctaccggcgccgccgccgc 63 ||||| || ||||| ||||||||||||||||| Sbjct: 1861 accacgccggcggccaccggcgccgccgccgc 1830
>gb|AF191543.1|AF191543 Mycobacterium avium subsp. paratuberculosis PurN (purN) and PurH (purH) genes, complete cds Length = 2750 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ccgcctccctgccctccttc 352 |||||||||||||||||||| Sbjct: 391 ccgcctccctgccctccttc 410
>gb|AY105328.1| Zea mays PCO087722 mRNA sequence Length = 1078 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 cccacccccaccacccccgc 42 |||||||||||||||||||| Sbjct: 501 cccacccccaccacccccgc 520
>tpe|BN000728.1| TPA: TPA_exp: Canis familiaris col6a3 gene for collagen, type VI, alpha 3 and mlph gene for melanophilin Length = 212696 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cccacccccaccacccccgc 42 |||||||||||||||||||| Sbjct: 37145 cccacccccaccacccccgc 37126
>gb|U12423.1|AEU12423 Alcaligenes eutrophus H16 megaplasmid pHG1, cbb CO2 fixation operon, glyceraldehyde-3-phosphate dehydrogenase (cbbGp), 3-phosphoglycerate kinase (cbbKp) and fructose-1,6-bisphosphate aldolase (cbbAp) genes, complete cds Length = 3534 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 accggcgccgccgccgcggt 66 |||||||||||||||||||| Sbjct: 696 accggcgccgccgccgcggt 715
>gb|AF005260.1|AF005260 Homo sapiens homeodomain-containing protein BAPX1 gene, complete cds Length = 4449 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 ccgcggctaccggcgccgccgccg 62 |||||||||||| ||||||||||| Sbjct: 339 ccgcggctaccgccgccgccgccg 362
>emb|AJ810851.1| Streptomyces sp. DSM 40477, tobramycin biosynthesis gene cluster region Length = 43220 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 cgcccacccccaccaccccc 40 |||||||||||||||||||| Sbjct: 16177 cgcccacccccaccaccccc 16158
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 cgccgccgcggtgacgccggagca 78 ||||||||||| |||||||||||| Sbjct: 2783487 cgccgccgcggcgacgccggagca 2783510
>emb|AJ920047.1| Canis familiaris melanophilin gene locus, breed Doberman Length = 197532 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cccacccccaccacccccgc 42 |||||||||||||||||||| Sbjct: 37195 cccacccccaccacccccgc 37176
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 cgccgccgcggtgacgccggagca 78 ||||||||||| |||||||||||| Sbjct: 86904 cgccgccgcggcgacgccggagca 86881
>emb|AL606602.2|OSJN00067 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0056F09, complete sequence Length = 148191 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 cgacgccgccaccgcctccc 341 |||||||||||||||||||| Sbjct: 80776 cgacgccgccaccgcctccc 80757
>gb|AC147558.3| Mus musculus BAC clone RP23-470N2 from 8, complete sequence Length = 212626 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 caccgcctccctgccctcct 350 |||||||||||||||||||| Sbjct: 87547 caccgcctccctgccctcct 87528
>gb|AF009802.1|AF009802 Homo sapiens homeodomain protein (BAPX1) gene, complete cds Length = 4750 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 ccgcggctaccggcgccgccgccg 62 |||||||||||| ||||||||||| Sbjct: 129 ccgcggctaccgccgccgccgccg 152
>gb|U78289.1|SFU78289 Streptomyces fradiae tylactone synthase, starter module and modules 1-7, (tylG) gene, complete cds Length = 43280 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ccacccccaccacccccgcg 43 |||||||||||||||||||| Sbjct: 34011 ccacccccaccacccccgcg 34030 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ccacccccaccacccccgcg 43 |||||||||||||||||||| Sbjct: 22807 ccacccccaccacccccgcg 22826 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ccacccccaccacccccgcg 43 |||||||||||||||||||| Sbjct: 6667 ccacccccaccacccccgcg 6686
>emb|AJ488721.1|TGR488721 Tectarius grandinatus partial 18S rRNA gene, specimen voucher TECT.TON.1 Length = 963 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 tccgacctctccacggggaa 246 |||||||||||||||||||| Sbjct: 141 tccgacctctccacggggaa 160 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,970,911 Number of Sequences: 3902068 Number of extensions: 2970911 Number of successful extensions: 103246 Number of sequences better than 10.0: 131 Number of HSP's better than 10.0 without gapping: 144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97474 Number of HSP's gapped (non-prelim): 5771 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
