ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast70a11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 371 bits (187), Expect = 1e-99 Identities = 335/382 (87%), Gaps = 3/382 (0%) Strand = Plus / Plus Query: 1 caagctcggcatcccgacggcgatgcacaacctcggcggggtcacctcgctgcccgacct 60 |||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||| Sbjct: 152 caagctcggcatcccgacggcgatccacaacctcggtggcgtctcctcgctgcccgacct 211 Query: 61 ggcggccgtgctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcgc 120 ||| || | ||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 212 ggcagctgcgctgtccatcccggcaagcaagcagccgttcctcggccgtcttatgcgcgc 271 Query: 121 gctggtcacctcaggcgtcttcgccgccggcggcaccaacaactccggggcggagctctt 180 ||||||||||||||||||||||||| || || | ||| |||| ||||||| ||||| Sbjct: 272 gctggtcacctcaggcgtcttcgccaacg--ggaaagaacgactcttgggcgga-ctctt 328 Query: 181 ccgcctcaacccactctcccgtgtcctggtggatggtgtcgatgcggaccaacaccacag 240 |||||||||||| || ||||| ||||||| || || |||| ||||| | |||||||| Sbjct: 329 ccgcctcaaccccctgtcccgcatcctggttgagggcgtcgtcgcggaggagcaccacag 388 Query: 241 ccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcgctggggat 300 ||||||||||||||| ||||| ||||| || | ||||||||||||||| ||||||||||| Sbjct: 389 ccagacgtccttcgtactcgctgggacttcccggcactacatggaagctgcgctggggat 448 Query: 301 ggccgagtggttcaagaaggacgtcaccgggccggtgccatcggtgttcgaggacgtgca 360 ||| || |||||||||||||||| ||| || || |||||| ||||||||||||||||||| Sbjct: 449 ggctgactggttcaagaaggacgccactggacccgtgccaacggtgttcgaggacgtgca 508 Query: 361 tagcgcgtcgctcttcgacgag 382 |||||||| |||||||||||| Sbjct: 509 cagcgcgtccctcttcgacgag 530
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 115 bits (58), Expect = 1e-22 Identities = 127/150 (84%) Strand = Plus / Plus Query: 233 caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 292 ||||||||||||||||||||||||||||||| |||||||| ||||||| | || || ||| Sbjct: 119239 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 119298 Query: 293 ctggggatggccgagtggttcaagaaggacgtcaccgggccggtgccatcggtgttcgag 352 |||||| ||| ||||||||||| ||||||||| | |||| | || || ||||||| Sbjct: 119299 ctggggctggacgagtggttcaggaaggacgtggcgccgccgctcccgtccccgttcgag 119358 Query: 353 gacgtgcatagcgcgtcgctcttcgacgag 382 |||||||| |||||||||| ||||||||| Sbjct: 119359 gacgtgcacggcgcgtcgctgttcgacgag 119388 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 70 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 119 ||||||| ||||||| || ||||||||||||||| ||||||| ||||||| Sbjct: 119079 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 119128 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 ccgagtggttcaagaaggac 322 |||||||||||||||||||| Sbjct: 63610 ccgagtggttcaagaaggac 63629
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 115 bits (58), Expect = 1e-22 Identities = 127/150 (84%) Strand = Plus / Plus Query: 233 caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 292 ||||||||||||||||||||||||||||||| |||||||| ||||||| | || || ||| Sbjct: 4988 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 5047 Query: 293 ctggggatggccgagtggttcaagaaggacgtcaccgggccggtgccatcggtgttcgag 352 |||||| ||| ||||||||||| ||||||||| | |||| | || || ||||||| Sbjct: 5048 ctggggctggacgagtggttcaggaaggacgtggcgccgccgctcccgtccccgttcgag 5107 Query: 353 gacgtgcatagcgcgtcgctcttcgacgag 382 |||||||| |||||||||| ||||||||| Sbjct: 5108 gacgtgcacggcgcgtcgctgttcgacgag 5137 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 70 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 119 ||||||| ||||||| || ||||||||||||||| ||||||| ||||||| Sbjct: 4828 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 4877 Score = 48.1 bits (24), Expect = 0.021 Identities = 54/64 (84%) Strand = Plus / Plus Query: 95 ccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccggcggc 154 ||||||||| ||||||| ||||| ||||||| ||| |||||||||||||||| || | Sbjct: 60107 ccgttcctccgccgcctcatgcggctgctggtccactccggcgtcttcgccgccgacgac 60166 Query: 155 acca 158 |||| Sbjct: 60167 acca 60170
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 115 bits (58), Expect = 1e-22 Identities = 127/150 (84%) Strand = Plus / Minus Query: 233 caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 292 ||||||||||||||||||||||||||||||| |||||||| ||||||| | || || ||| Sbjct: 11494549 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 11494490 Query: 293 ctggggatggccgagtggttcaagaaggacgtcaccgggccggtgccatcggtgttcgag 352 |||||| ||| ||||||||||| ||||||||| | |||| | || || ||||||| Sbjct: 11494489 ctggggctggacgagtggttcaggaaggacgtggcgccgccgctcccgtccccgttcgag 11494430 Query: 353 gacgtgcatagcgcgtcgctcttcgacgag 382 |||||||| |||||||||| ||||||||| Sbjct: 11494429 gacgtgcacggcgcgtcgctgttcgacgag 11494400 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 70 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 119 ||||||| ||||||| || ||||||||||||||| ||||||| ||||||| Sbjct: 11494709 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 11494660 Score = 50.1 bits (25), Expect = 0.005 Identities = 46/53 (86%) Strand = Plus / Minus Query: 95 ccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgc 147 ||||||||| ||||||| ||||| |||||||| ||| |||||||||||||| Sbjct: 11355132 ccgttcctccgccgcctcatgcggctgctggtcaactcgggcgtcttcgccgc 11355080 Score = 48.1 bits (24), Expect = 0.021 Identities = 54/64 (84%) Strand = Plus / Minus Query: 95 ccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccggcggc 154 ||||||||| ||||||| ||||| ||||||| ||| |||||||||||||||| || | Sbjct: 11439430 ccgttcctccgccgcctcatgcggctgctggtccactccggcgtcttcgccgccgacgac 11439371 Query: 155 acca 158 |||| Sbjct: 11439370 acca 11439367 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 cacctcgctgcccgacctggc 63 ||||||||||||||||||||| Sbjct: 15679519 cacctcgctgcccgacctggc 15679539 Score = 42.1 bits (21), Expect = 1.3 Identities = 84/105 (80%) Strand = Plus / Minus Query: 45 cctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctcg 104 |||||||||||||||| | |||| |||||| ||||| | ||||| || |||||| Sbjct: 11331534 cctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctcccattcctcc 11331475 Query: 105 gccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccg 149 ||||||| ||||| ||||||| ||| |||||||||||||||| Sbjct: 11331474 gccgcctcatgcggctgctggtccactcgggcgtcttcgccgccg 11331430 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ccgagtggttcaagaaggac 322 |||||||||||||||||||| Sbjct: 11550178 ccgagtggttcaagaaggac 11550159 Score = 40.1 bits (20), Expect = 5.1 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 gccggtgccatcggtgttcgaggacgtgcatagcgcgtcgctcttcgacgag 382 ||||||||| ||| ||||||||||| ||| ||||| |||| ||||||||| Sbjct: 7138573 gccggtgccgtcgccgttcgaggacgcgcacggcgcgccgctgttcgacgag 7138522
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 115 bits (58), Expect = 1e-22 Identities = 127/150 (84%) Strand = Plus / Plus Query: 233 caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 292 ||||||||||||||||||||||||||||||| |||||||| ||||||| | || || ||| Sbjct: 399 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 458 Query: 293 ctggggatggccgagtggttcaagaaggacgtcaccgggccggtgccatcggtgttcgag 352 |||||| ||| ||||||||||| ||||||||| | |||| | || || ||||||| Sbjct: 459 ctggggctggacgagtggttcaggaaggacgtggcgccgccgctcccgtccccgttcgag 518 Query: 353 gacgtgcatagcgcgtcgctcttcgacgag 382 |||||||| |||||||||| ||||||||| Sbjct: 519 gacgtgcacggcgcgtcgctgttcgacgag 548 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 70 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 119 ||||||| ||||||| || ||||||||||||||| ||||||| ||||||| Sbjct: 239 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 288
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 115 bits (58), Expect = 1e-22 Identities = 127/150 (84%) Strand = Plus / Plus Query: 233 caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 292 ||||||||||||||||||||||||||||||| |||||||| ||||||| | || || ||| Sbjct: 404 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 463 Query: 293 ctggggatggccgagtggttcaagaaggacgtcaccgggccggtgccatcggtgttcgag 352 |||||| ||| ||||||||||| ||||||||| | |||| | || || ||||||| Sbjct: 464 ctggggctggacgagtggttcaggaaggacgtggcgccgccgctcccgtccccgttcgag 523 Query: 353 gacgtgcatagcgcgtcgctcttcgacgag 382 |||||||| |||||||||| ||||||||| Sbjct: 524 gacgtgcacggcgcgtcgctgttcgacgag 553 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 70 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 119 ||||||| ||||||| || ||||||||||||||| ||||||| ||||||| Sbjct: 244 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 293
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 115 bits (58), Expect = 1e-22 Identities = 127/150 (84%) Strand = Plus / Minus Query: 233 caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 292 ||||||||||||||||||||||||||||||| |||||||| ||||||| | || || ||| Sbjct: 11573738 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 11573679 Query: 293 ctggggatggccgagtggttcaagaaggacgtcaccgggccggtgccatcggtgttcgag 352 |||||| ||| ||||||||||| ||||||||| | |||| | || || ||||||| Sbjct: 11573678 ctggggctggacgagtggttcaggaaggacgtggcgccgccgctcccgtccccgttcgag 11573619 Query: 353 gacgtgcatagcgcgtcgctcttcgacgag 382 |||||||| |||||||||| ||||||||| Sbjct: 11573618 gacgtgcacggcgcgtcgctgttcgacgag 11573589 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 70 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 119 ||||||| ||||||| || ||||||||||||||| ||||||| ||||||| Sbjct: 11573898 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 11573849 Score = 50.1 bits (25), Expect = 0.005 Identities = 46/53 (86%) Strand = Plus / Minus Query: 95 ccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgc 147 ||||||||| ||||||| ||||| |||||||| ||| |||||||||||||| Sbjct: 11434321 ccgttcctccgccgcctcatgcggctgctggtcaactcgggcgtcttcgccgc 11434269 Score = 48.1 bits (24), Expect = 0.021 Identities = 54/64 (84%) Strand = Plus / Minus Query: 95 ccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccggcggc 154 ||||||||| ||||||| ||||| ||||||| ||| |||||||||||||||| || | Sbjct: 11518619 ccgttcctccgccgcctcatgcggctgctggtccactccggcgtcttcgccgccgacgac 11518560 Query: 155 acca 158 |||| Sbjct: 11518559 acca 11518556 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 cacctcgctgcccgacctggc 63 ||||||||||||||||||||| Sbjct: 15766896 cacctcgctgcccgacctggc 15766916 Score = 42.1 bits (21), Expect = 1.3 Identities = 84/105 (80%) Strand = Plus / Minus Query: 45 cctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctcg 104 |||||||||||||||| | |||| |||||| ||||| | ||||| || |||||| Sbjct: 11410723 cctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctcccattcctcc 11410664 Query: 105 gccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccg 149 ||||||| ||||| ||||||| ||| |||||||||||||||| Sbjct: 11410663 gccgcctcatgcggctgctggtccactcgggcgtcttcgccgccg 11410619 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ccgagtggttcaagaaggac 322 |||||||||||||||||||| Sbjct: 11629367 ccgagtggttcaagaaggac 11629348 Score = 40.1 bits (20), Expect = 5.1 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 gccggtgccatcggtgttcgaggacgtgcatagcgcgtcgctcttcgacgag 382 ||||||||| ||| ||||||||||| ||| ||||| |||| ||||||||| Sbjct: 7204544 gccggtgccgtcgccgttcgaggacgcgcacggcgcgccgctgttcgacgag 7204493
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 50.1 bits (25), Expect = 0.005 Identities = 46/53 (86%) Strand = Plus / Minus Query: 95 ccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgc 147 ||||||||| ||||||| ||||| |||||||| ||| |||||||||||||| Sbjct: 141490 ccgttcctccgccgcctcatgcggctgctggtcaactcgggcgtcttcgccgc 141438 Score = 42.1 bits (21), Expect = 1.3 Identities = 84/105 (80%) Strand = Plus / Minus Query: 45 cctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctcg 104 |||||||||||||||| | |||| |||||| ||||| | ||||| || |||||| Sbjct: 117892 cctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctcccattcctcc 117833 Query: 105 gccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccg 149 ||||||| ||||| ||||||| ||| |||||||||||||||| Sbjct: 117832 gccgcctcatgcggctgctggtccactcgggcgtcttcgccgccg 117788
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 46.1 bits (23), Expect = 0.083 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 catcccgacggcgatgcacaacctcggcggggtcacctcgctgcccgacctggcggccgt 69 ||||||||| || || |||||||| |||||| || ||||||| ||||| | ||||| Sbjct: 161 catcccgaccgccatccacaacctaggcgggtctgccacgctgccggacctcgtggccgc 220 Query: 70 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcgcgctggtcac 129 ||||||| | || || ||||| ||||||||||| ||| ||||||| ||||||||| Sbjct: 221 gctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctggtcac 280 Query: 130 ctcaggcgtcttcgc 144 || ||||||||||| Sbjct: 281 gtcgggcgtcttcgc 295
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 37 cggggtcacctcgctgcccgac 58 |||||||||||||||||||||| Sbjct: 151509 cggggtcacctcgctgcccgac 151530
>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09, complete sequence Length = 171861 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 cacctcgctgcccgacctggc 63 ||||||||||||||||||||| Sbjct: 89200 cacctcgctgcccgacctggc 89220
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 cgacctggcggccgtgctgtc 75 ||||||||||||||||||||| Sbjct: 278847 cgacctggcggccgtgctgtc 278867
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 42.1 bits (21), Expect = 1.3 Identities = 84/105 (80%) Strand = Plus / Plus Query: 45 cctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctcg 104 |||||||||||||||| | |||| |||||| ||||| | ||||| || |||||| Sbjct: 213 cctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctcccattcctcc 272 Query: 105 gccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccg 149 ||||||| ||||| ||||||| ||| |||||||||||||||| Sbjct: 273 gccgcctcatgcggctgctggtccactcgggcgtcttcgccgccg 317
>ref|XM_478005.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1026 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 113 atgcgcgcgctggtcacctcaggcgtcttcgc 144 ||||||| ||||||| |||| ||||||||||| Sbjct: 202 atgcgcgtgctggtcgcctcgggcgtcttcgc 233
>ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1083 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 113 atgcgcgcgctggtcacctcaggcgtcttcgc 144 ||||||| ||||||| |||| ||||||||||| Sbjct: 205 atgcgcgtgctggtcgcctcgggcgtcttcgc 236
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 40.1 bits (20), Expect = 5.1 Identities = 44/52 (84%) Strand = Plus / Plus Query: 331 gccggtgccatcggtgttcgaggacgtgcatagcgcgtcgctcttcgacgag 382 ||||||||| ||| ||||||||||| ||| ||||| |||| ||||||||| Sbjct: 43982 gccggtgccgtcgccgttcgaggacgcgcacggcgcgccgctgttcgacgag 44033
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 40.1 bits (20), Expect = 5.1 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 gccggtgccatcggtgttcgaggacgtgcatagcgcgtcgctcttcgacgag 382 ||||||||| ||| ||||||||||| ||| ||||| |||| ||||||||| Sbjct: 51793 gccggtgccgtcgccgttcgaggacgcgcacggcgcgccgctgttcgacgag 51742
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 gggatggccgagtggttcaagaag 319 ||||||||||||||| |||||||| Sbjct: 657839 gggatggccgagtgggtcaagaag 657862
>ref|XM_744633.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g05970) partial mRNA Length = 4257 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 gagtggttcaagaaggacgt 324 |||||||||||||||||||| Sbjct: 32 gagtggttcaagaaggacgt 13
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 cgttcctcggccgcctgatgcgcg 119 ||||||| |||||||||||||||| Sbjct: 108241 cgttcctgggccgcctgatgcgcg 108264
>gb|AE005746.1| Caulobacter crescentus CB15 section 72 of 359 of the complete genome Length = 10948 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 tcacctcgctgcccgacctg 61 |||||||||||||||||||| Sbjct: 2245 tcacctcgctgcccgacctg 2226
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 113 atgcgcgcgctggtcacctcaggcgtcttcgc 144 ||||||| ||||||| |||| ||||||||||| Sbjct: 16295699 atgcgcgtgctggtcgcctcgggcgtcttcgc 16295668 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 113 atgcgcgcgctggtcacctcaggcgtcttcgc 144 ||||||| ||||||| |||| ||||||||||| Sbjct: 16265053 atgcgcgtgctggtcgcctcgggcgtcttcgc 16265022 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 113 atgcgcgcgctggtcacctcaggcgtcttcgc 144 ||||||| ||||||| |||| ||||||||||| Sbjct: 16219664 atgcgcgtgctggtcgcctcgggcgtcttcgc 16219695
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 ggcgtcttcgccgccggcgg 153 |||||||||||||||||||| Sbjct: 3091215 ggcgtcttcgccgccggcgg 3091196
>dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0473C09 Length = 141066 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 113 atgcgcgcgctggtcacctcaggcgtcttcgc 144 ||||||| ||||||| |||| ||||||||||| Sbjct: 1755 atgcgcgtgctggtcgcctcgggcgtcttcgc 1724
>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_H04 Length = 151699 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 113 atgcgcgcgctggtcacctcaggcgtcttcgc 144 ||||||| ||||||| |||| ||||||||||| Sbjct: 116137 atgcgcgtgctggtcgcctcgggcgtcttcgc 116106 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 113 atgcgcgcgctggtcacctcaggcgtcttcgc 144 ||||||| ||||||| |||| ||||||||||| Sbjct: 85491 atgcgcgtgctggtcgcctcgggcgtcttcgc 85460 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 113 atgcgcgcgctggtcacctcaggcgtcttcgc 144 ||||||| ||||||| |||| ||||||||||| Sbjct: 40102 atgcgcgtgctggtcgcctcgggcgtcttcgc 40133
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gcagccgttcctcggccgcc 110 |||||||||||||||||||| Sbjct: 3087139 gcagccgttcctcggccgcc 3087158 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,015,049 Number of Sequences: 3902068 Number of extensions: 2015049 Number of successful extensions: 42131 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41467 Number of HSP's gapped (non-prelim): 659 length of query: 382 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 360 effective length of database: 17,147,199,772 effective search space: 6172991917920 effective search space used: 6172991917920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
