>gb|AC087329.10| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-383N15, Complete
              Sequence, complete sequence
          Length = 219559

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 124    cctcctcctgtttctctttctcc 146
              |||||||||||||||||||||||
Sbjct: 101609 cctcctcctgtttctctttctcc 101631

>gb|AC125065.3| Mus musculus BAC clone RP23-430G6 from chromosome 5, complete sequence
          Length = 205734

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 228    gcctacctcccctgccccgacatgga 253
              |||||||||||||||||| |||||||
Sbjct: 189582 gcctacctcccctgccccaacatgga 189607

>gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome 5, complete sequence
          Length = 222180

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 228    gcctacctcccctgccccgacatgga 253
              |||||||||||||||||| |||||||
Sbjct: 124997 gcctacctcccctgccccaacatgga 124972

>emb|AL136976.11| Human DNA sequence from clone RP3-474I3 on chromosome 6 Contains part
             of the novel gene for KIAA1116, complete sequence
          Length = 55012

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 143   ctcccgcctctgctgctgctg 163
             |||||||||||||||||||||
Sbjct: 17890 ctcccgcctctgctgctgctg 17870

>gb|AC017006.4| Homo sapiens BAC clone RP11-110G2 from 2, complete sequence
          Length = 191953

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    cacccccactccagtctccag 59
             |||||||||||||||||||||
Sbjct: 59826 cacccccactccagtctccag 59806

>gb|AC007239.3| Homo sapiens BAC clone RP11-83A12 from 2, complete sequence
          Length = 139391

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   tcctcctgtttctctttctcc 146
             |||||||||||||||||||||
Sbjct: 92852 tcctcctgtttctctttctcc 92872

>gb|AC173211.3| Gallus gallus BAC clone CH261-2F13 from chromosome ul, complete
             sequence
          Length = 204791

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 45    cactccagtctccagtccggt 65
             |||||||||||||||||||||
Sbjct: 63643 cactccagtctccagtccggt 63623

>gb|AC161469.3| Gallus gallus BAC clone CH261-69M17 from chromosome ul, complete
             sequence
          Length = 186443

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 45    cactccagtctccagtccggt 65
             |||||||||||||||||||||
Sbjct: 45208 cactccagtctccagtccggt 45228

>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete
              sequence
          Length = 906719

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    cctcctgtttctctttctcc 146
              ||||||||||||||||||||
Sbjct: 220787 cctcctgtttctctttctcc 220806

>gb|AC101948.10| Mus musculus chromosome 15, clone RP24-139K14, complete sequence
          Length = 182534

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 124    cctcctcctgtttctctttctccc 147
              ||||||||| ||||||||||||||
Sbjct: 149894 cctcctcctctttctctttctccc 149871

>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 241   gccccgacatggacacggggactg 264
             ||||||||| ||||||||||||||
Sbjct: 37495 gccccgacaaggacacggggactg 37518

>ref|XM_873670.1| PREDICTED: Bos taurus similar to glycerophosphodiester
            phosphodiesterase domain containing 5, transcript variant
            3 (LOC532719), mRNA
          Length = 2328

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 124  cctcctcctgtttctctttctccc 147
            |||||||||||| |||||||||||
Sbjct: 2200 cctcctcctgttcctctttctccc 2223

>gb|AC144816.3| Mus musculus BAC clone RP24-243E15 from chromosome 6, complete sequence
          Length = 167096

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   tcctcctgtttctctttctc 145
             ||||||||||||||||||||
Sbjct: 26292 tcctcctgtttctctttctc 26273

>gb|AC149030.1| Dasypus novemcinctus clone VMRC5-81F18, complete sequence
          Length = 154373

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    gcgcgcggcgaccgaccgac 97
             ||||||||||||||||||||
Sbjct: 87952 gcgcgcggcgaccgaccgac 87933

>gb|AC159197.3| Mus musculus BAC clone RP23-421P10 from chromosome 12, complete
             sequence
          Length = 188400

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   tcctcctgtttctctttctc 145
             ||||||||||||||||||||
Sbjct: 52761 tcctcctgtttctctttctc 52742

>ref|XM_567991.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNL04400) partial mRNA
          Length = 2528

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 127 cctcctgtttctctttctcc 146
           ||||||||||||||||||||
Sbjct: 685 cctcctgtttctctttctcc 666

>gb|AC114575.8| Mus musculus chromosome 12, clone RP23-152I9, complete sequence
          Length = 193164

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   tcctcctgtttctctttctc 145
             ||||||||||||||||||||
Sbjct: 46908 tcctcctgtttctctttctc 46889

>gb|AC165338.3| Mus musculus BAC clone RP24-456K15 from chromosome 10, complete sequence
          Length = 165515

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 124    cctcctcctgtttctctttctccc 147
              ||||||||||||||||| ||||||
Sbjct: 137156 cctcctcctgtttctctctctccc 137179

>gb|AC158567.3| Mus musculus chromosome 15, clone RP24-93F2, complete sequence
          Length = 188718

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 124    cctcctcctgtttctctttctccc 147
              ||||||||| ||||||||||||||
Sbjct: 127054 cctcctcctctttctctttctccc 127031

>gb|AC132401.4| Mus musculus BAC clone RP23-404A8 from chromosome 3, complete sequence
          Length = 200657

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    ctcctcctgtttctctttct 144
              ||||||||||||||||||||
Sbjct: 102984 ctcctcctgtttctctttct 103003

>emb|AL592465.8| Mouse DNA sequence from clone RP23-36C4 on chromosome 11 Contains the
             Tbx4 gene for T-box 4, a ribosomal protein L21 (Rpl21)
             pseudogene and the 3' end of the Brip1 gene for BRCA1
             interacting protein C-terminal helicase 1, complete
             sequence
          Length = 238358

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   ccgcctctgctgctgctgga 165
             ||||||||||||||||||||
Sbjct: 65523 ccgcctctgctgctgctgga 65542

>emb|AL954245.1| Pan troglodytes chromosome 22 clone PTB-047B05 map 22q22.3, complete
             sequence
          Length = 176622

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 124   cctcctcctgtttctctttctccc 147
             ||||| ||||||||||||||||||
Sbjct: 76708 cctccacctgtttctctttctccc 76685

>dbj|AB001523.1| Homo sapiens gene for TMEM1 and PWP2,complete and partial cds
          Length = 122638

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 124   cctcctcctgtttctctttctccc 147
             ||||| ||||||||||||||||||
Sbjct: 47196 cctccacctgtttctctttctccc 47173

>gb|AC012295.20| Mus musculus chromosome 11, clone RP23-48A17, complete sequence
          Length = 187364

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    ccgcctctgctgctgctgga 165
              ||||||||||||||||||||
Sbjct: 118967 ccgcctctgctgctgctgga 118986

>emb|AL928617.13| Mouse DNA sequence from clone RP23-326E21 on chromosome 2, complete
             sequence
          Length = 190652

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   tcctcctgtttctctttctc 145
             ||||||||||||||||||||
Sbjct: 50975 tcctcctgtttctctttctc 50994

>gb|AC037433.6|AC037433 Homo sapiens chromosome 15, clone RP11-92C13, complete sequence
          Length = 164500

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 135    ttctctttctcccgcctctgctgctgct 162
              ||||| ||||||||| ||||||||||||
Sbjct: 101403 ttctccttctcccgcttctgctgctgct 101376

>gb|AC154714.3| Mus musculus BAC clone RP23-129H12 from chromosome 12, complete sequence
          Length = 200017

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    tcctcctgtttctctttctc 145
              ||||||||||||||||||||
Sbjct: 165521 tcctcctgtttctctttctc 165502

>gb|AC005052.2|AC005052 Homo sapiens BAC clone CTB-38K21 from Xq23, complete sequence
          Length = 134210

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 124    cctcctcctgtttctctttctccc 147
              ||||||||| ||||||||||||||
Sbjct: 112605 cctcctcctttttctctttctccc 112628

>dbj|AP001753.1| Homo sapiens genomic DNA, chromosome 21q, section 97/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 124   cctcctcctgtttctctttctccc 147
             ||||| ||||||||||||||||||
Sbjct: 88731 cctccacctgtttctctttctccc 88708

>gb|AC153506.4| Mus musculus 10 BAC RP23-99K2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 185656

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 124   cctcctcctgtttctctttctccc 147
             ||||||||||||||||| ||||||
Sbjct: 17314 cctcctcctgtttctctctctccc 17337

>emb|AL732454.12| Mouse DNA sequence from clone RP23-289P8 on chromosome X, complete
             sequence
          Length = 179447

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   tcctcctgtttctctttctc 145
             ||||||||||||||||||||
Sbjct: 23439 tcctcctgtttctctttctc 23420


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,532,947
Number of Sequences: 3902068
Number of extensions: 2532947
Number of successful extensions: 61454
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61388
Number of HSP's gapped (non-prelim): 66
length of query: 326
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 304
effective length of database: 17,147,199,772
effective search space: 5212748730688
effective search space used: 5212748730688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)