>RADA_SYNY3 (P74391) DNA repair protein radA homolog (DNA repair protein sms|
           homolog)
          Length = 505

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 27  EYAQWLKRS-RCSEHGTVGREITPTNSEGTKH 119
           ++AQW  R  +C E+G++  EI    S GT H
Sbjct: 16  DHAQWFGRCPKCHEYGSLQEEIVNAVSSGTNH 47

>CREA_ASPNG (Q05620) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 427

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 65  TRHSRQRDNPNKLRRNQA 118
           TRHSR  +NPN  RRN+A
Sbjct: 122 TRHSRIHNNPNSRRRNKA 139

>YFMO_BACSU (O06473) Multidrug efflux protein yfmO|
          Length = 396

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 95  WGYLSAYCAVFTAPATLQPLGVFSGVVVV 9
           WG L A  +VFTAP   + LG    +VV+
Sbjct: 254 WGLLLAITSVFTAPLVHKALGTVRSLVVL 282

>EXBB_NEIMC (P95375) Biopolymer transport exbB protein|
          Length = 220

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 149 SLAAGGACVPMLGSFGVCWGYLSAYCAVFTAPATLQPLGVFSGVVVVGP 3
           +LA+ GA  P +G FG  WG       ++ A   +   G  S   V GP
Sbjct: 126 ALASIGATAPFIGLFGTVWG-------IYHALINIGQSGQMSIAAVAGP 167

>EXBB_NEIMB (P64100) Biopolymer transport exbB protein|
          Length = 220

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 149 SLAAGGACVPMLGSFGVCWGYLSAYCAVFTAPATLQPLGVFSGVVVVGP 3
           +LA+ GA  P +G FG  WG       ++ A   +   G  S   V GP
Sbjct: 126 ALASIGATAPFIGLFGTVWG-------IYHALINIGQSGQMSIAAVAGP 167

>EXBB_NEIMA (P64099) Biopolymer transport exbB protein|
          Length = 220

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 149 SLAAGGACVPMLGSFGVCWGYLSAYCAVFTAPATLQPLGVFSGVVVVGP 3
           +LA+ GA  P +G FG  WG       ++ A   +   G  S   V GP
Sbjct: 126 ALASIGATAPFIGLFGTVWG-------IYHALINIGQSGQMSIAAVAGP 167

>EXBB_NEIGO (O06433) Biopolymer transport exbB protein|
          Length = 220

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 149 SLAAGGACVPMLGSFGVCWGYLSAYCAVFTAPATLQPLGVFSGVVVVGP 3
           +LA+ GA  P +G FG  WG       ++ A   +   G  S   V GP
Sbjct: 126 ALASIGATAPFIGLFGTVWG-------IYHALINIGQSGQMSIAAVAGP 167

>EXBB_SALTY (P0A1H7) Biopolymer transport exbB protein|
          Length = 244

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 146 LAAGGACVPMLGSFGVCWGYLSAYCAVFTAPAT 48
           LA  GA  P +G FG  WG ++++  +     T
Sbjct: 133 LATIGAISPFVGLFGTVWGIMNSFIGIAQTQTT 165

>EXBB_SALTI (P0A1H8) Biopolymer transport exbB protein|
          Length = 244

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 146 LAAGGACVPMLGSFGVCWGYLSAYCAVFTAPAT 48
           LA  GA  P +G FG  WG ++++  +     T
Sbjct: 133 LATIGAISPFVGLFGTVWGIMNSFIGIAQTQTT 165

>EXBB_ECOLI (P0ABU7) Biopolymer transport exbB protein|
          Length = 244

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 146 LAAGGACVPMLGSFGVCWGYLSAYCAVFTAPAT 48
           LA  GA  P +G FG  WG ++++  +     T
Sbjct: 133 LATIGAISPFVGLFGTVWGIMNSFIGIAQTQTT 165

>EXBB_ECO57 (P0ABU8) Biopolymer transport exbB protein|
          Length = 244

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 146 LAAGGACVPMLGSFGVCWGYLSAYCAVFTAPAT 48
           LA  GA  P +G FG  WG ++++  +     T
Sbjct: 133 LATIGAISPFVGLFGTVWGIMNSFIGIAQTQTT 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,024,502
Number of Sequences: 219361
Number of extensions: 362968
Number of successful extensions: 1467
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)