>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16
          Length = 349442

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     tcgaggccggcgtgcccgcc 68
              ||||||||||||||||||||
Sbjct: 341475 tcgaggccggcgtgcccgcc 341456

>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14
          Length = 346301

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     tcgaggccggcgtgcccgcc 68
              ||||||||||||||||||||
Sbjct: 311291 tcgaggccggcgtgcccgcc 311272

>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12
          Length = 343243

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     tcgaggccggcgtgcccgcc 68
              ||||||||||||||||||||
Sbjct: 170598 tcgaggccggcgtgcccgcc 170617

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 49      tcgaggccggcgtgcccgcc 68
               ||||||||||||||||||||
Sbjct: 3358499 tcgaggccggcgtgcccgcc 3358518

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 46    cgctcgaggccggcgtgcc 64
             |||||||||||||||||||
Sbjct: 92545 cgctcgaggccggcgtgcc 92527

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 46       cgctcgaggccggcgtgcc 64
                |||||||||||||||||||
Sbjct: 28660791 cgctcgaggccggcgtgcc 28660809

>gb|AC137525.3| Mus musculus BAC clone RP23-68H24 from chromosome 3, complete
            sequence
          Length = 203159

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 76   cggaccaccagcacactga 94
            |||||||||||||||||||
Sbjct: 1376 cggaccaccagcacactga 1394

>ref|XM_751171.1| Ustilago maydis 521 hypothetical protein (UM00117.1) partial mRNA
          Length = 2040

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 28   tcttcctccgtctcttcac 46
            |||||||||||||||||||
Sbjct: 1235 tcttcctccgtctcttcac 1253

>emb|AL118516.10|HSBK29F11 Human DNA sequence from clone CTA-29F11 on chromosome 22, complete
             sequence
          Length = 89319

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                        
Query: 111   cgggccgctgact-tcttggctcccga 136
             ||||||||||||| |||||||||||||
Sbjct: 49638 cgggccgctgactctcttggctcccga 49664

>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     cgctcgaggccggcgtgcc 64
              |||||||||||||||||||
Sbjct: 348773 cgctcgaggccggcgtgcc 348755

>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     cgctcgaggccggcgtgcc 64
              |||||||||||||||||||
Sbjct: 256607 cgctcgaggccggcgtgcc 256589

>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     cgctcgaggccggcgtgcc 64
              |||||||||||||||||||
Sbjct: 123883 cgctcgaggccggcgtgcc 123865

>gb|AF039713.1| Caenorhabditis elegans cosmid F57B10, complete sequence
          Length = 36296

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    ttcttcctccgtctcttca 45
             |||||||||||||||||||
Sbjct: 31499 ttcttcctccgtctcttca 31517

>gb|AC158233.2| Mus musculus BAC clone RP23-240E15 from chromosome 3, complete sequence
          Length = 209923

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 76     cggaccaccagcacactga 94
              |||||||||||||||||||
Sbjct: 165044 cggaccaccagcacactga 165062

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 46       cgctcgaggccggcgtgcc 64
                |||||||||||||||||||
Sbjct: 28752115 cgctcgaggccggcgtgcc 28752133

>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete
             sequence
          Length = 158839

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 46    cgctcgaggccggcgtgcc 64
             |||||||||||||||||||
Sbjct: 38105 cgctcgaggccggcgtgcc 38087

>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative
             dehydrogenase/reductase genes, complete cds; erythromycin
             biosynthesis gene cluster, complete sequence; putative
             oxidoreductase and LipN genes, complete cds; monoamine
             oxidase gene, partial cds; and unknown gene
          Length = 61845

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    gctcgaggccggcgtgccc 65
             |||||||||||||||||||
Sbjct: 60652 gctcgaggccggcgtgccc 60670


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 718,673
Number of Sequences: 3902068
Number of extensions: 718673
Number of successful extensions: 55688
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55461
Number of HSP's gapped (non-prelim): 227
length of query: 146
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 125
effective length of database: 17,151,101,840
effective search space: 2143887730000
effective search space used: 2143887730000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)