ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast69h04 |
|---|---|
| Clone Library Name | barley_pub |
>HMT1_MAIZE (Q9FUN0) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (ZmHMT-1) Length = 323 Score = 119 bits (298), Expect = 2e-27 Identities = 56/60 (93%), Positives = 60/60 (100%) Frame = +2 Query: 2 ATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFLARGL 181 ATQLEALGADINDPLWSAACLIT+PHL+KEVHMQYLEAGADVIISSSYQATIPGF+ARG+ Sbjct: 22 ATQLEALGADINDPLWSAACLITRPHLVKEVHMQYLEAGADVIISSSYQATIPGFIARGM 81
>HMT1_ARATH (Q9SDL7) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (AtHMT-1) Length = 326 Score = 95.5 bits (236), Expect = 3e-20 Identities = 45/60 (75%), Positives = 51/60 (85%) Frame = +2 Query: 2 ATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFLARGL 181 ATQLE GA INDPLWSA LI P LIK VHM+YLEAGAD++++SSYQATIPGFL+RGL Sbjct: 28 ATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGADIVVTSSYQATIPGFLSRGL 87
>HMT3_ARATH (Q8LAX0) Homocysteine S-methyltransferase 3 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S-methyltransferase 3) (AtHMT-3) Length = 347 Score = 93.2 bits (230), Expect = 2e-19 Identities = 41/60 (68%), Positives = 53/60 (88%) Frame = +2 Query: 2 ATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFLARGL 181 AT+L+ GADINDPLWSA CLIT PHL+ +VH+ YLE+GA++II++SYQATI GF+A+GL Sbjct: 31 ATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLESGANIIITASYQATIQGFVAKGL 90
>HMT3_MAIZE (Q9FUM8) Homocysteine S-methyltransferase 3 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S-methyltransferase 3) (ZmHMT-3) Length = 338 Score = 92.8 bits (229), Expect = 2e-19 Identities = 41/59 (69%), Positives = 53/59 (89%) Frame = +2 Query: 2 ATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFLARG 178 AT+LEA GAD+NDPLWSA CL++ PHLI++VHM YLEAGA++II++SYQATI GF ++G Sbjct: 31 ATELEANGADLNDPLWSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQATIQGFESKG 89
>HMT2_MAIZE (Q9FUM9) Homocysteine S-methyltransferase 2 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (ZmHMT-2) Length = 339 Score = 92.8 bits (229), Expect = 2e-19 Identities = 41/59 (69%), Positives = 53/59 (89%) Frame = +2 Query: 2 ATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFLARG 178 AT+LEA GAD+NDPLWSA CL++ PHLI++VHM YLEAGA++II++SYQATI GF ++G Sbjct: 31 ATELEANGADLNDPLWSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQATIQGFESKG 89
>HMT2_ARATH (Q9M1W4) Homocysteine S-methyltransferase 2 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (AtHMT-2) Length = 333 Score = 90.1 bits (222), Expect = 1e-18 Identities = 41/59 (69%), Positives = 48/59 (81%) Frame = +2 Query: 2 ATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFLARG 178 AT+ E GAD+NDPLWSA CL+T PHLI VH+ YLEAGAD+I S+SYQATI GF A+G Sbjct: 27 ATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYLEAGADIISSASYQATIQGFEAKG 85
>HMT4_MAIZE (Q9FUM7) Homocysteine S-methyltransferase 4 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 4) (SMM:Hcy S-methyltransferase 4) (ZmHMT-4) Length = 342 Score = 88.6 bits (218), Expect = 4e-18 Identities = 41/58 (70%), Positives = 50/58 (86%) Frame = +2 Query: 5 TQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFLARG 178 T+LEA GAD++D LWSA CL + PHLI++VH+ YLEAGADVIIS+SYQATI GF +RG Sbjct: 33 TELEAHGADLHDALWSAKCLASAPHLIRKVHLDYLEAGADVIISASYQATIEGFQSRG 90
>SMTA_ASTBI (P56707) Selenocysteine methyltransferase (EC 2.1.1.-)| (SECYS-methyltransferase) (SECYS-MT) Length = 338 Score = 87.4 bits (215), Expect = 9e-18 Identities = 38/58 (65%), Positives = 50/58 (86%) Frame = +2 Query: 5 TQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFLARG 178 T+L+ GAD+NDPLWSA CL++ PHLI++VH+ YLE GAD+II++SYQATI GF A+G Sbjct: 25 TELQRHGADLNDPLWSAKCLLSCPHLIRQVHLDYLENGADIIITASYQATIQGFKAKG 82
>MMUM_ECOLI (Q47690) Homocysteine S-methyltransferase (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase) Length = 310 Score = 70.9 bits (172), Expect = 9e-13 Identities = 34/60 (56%), Positives = 42/60 (70%) Frame = +2 Query: 2 ATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFLARGL 181 AT+LEA G ++ D LWSA L+ P LI+EVH+ Y AGA I++SYQAT GF ARGL Sbjct: 24 ATELEARGCNLADSLWSAKVLVENPELIREVHLDYYRAGAQCAITASYQATPAGFAARGL 83
>METH_VIBVY (Q7MHB1) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 41.2 bits (95), Expect = 8e-04 Identities = 16/31 (51%), Positives = 26/31 (83%) Frame = +2 Query: 62 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 154 ++T+P LIKE+H YLEAGAD++ ++++ AT Sbjct: 58 VLTQPQLIKEIHHAYLEAGADILETNTFNAT 88
>METH_VIBVU (Q8DCJ7) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 41.2 bits (95), Expect = 8e-04 Identities = 16/31 (51%), Positives = 26/31 (83%) Frame = +2 Query: 62 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 154 ++T+P LIKE+H YLEAGAD++ ++++ AT Sbjct: 58 VLTQPQLIKEIHHAYLEAGADILETNTFNAT 88
>METH_VIBPA (Q87L95) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 40.0 bits (92), Expect = 0.002 Identities = 15/31 (48%), Positives = 26/31 (83%) Frame = +2 Query: 62 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 154 ++++P LIKE+H YLEAGAD++ ++++ AT Sbjct: 58 VLSQPQLIKEIHSAYLEAGADILETNTFNAT 88
>METH_VIBCH (Q9KUW9) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 39.7 bits (91), Expect = 0.002 Identities = 14/31 (45%), Positives = 26/31 (83%) Frame = +2 Query: 62 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 154 ++T+P +IKE+H YLEAGAD++ ++++ +T Sbjct: 58 VLTQPQIIKEIHSAYLEAGADILETNTFNST 88
>MHT1_YEAST (Q12525) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) Length = 324 Score = 37.7 bits (86), Expect = 0.008 Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 9/58 (15%) Frame = +2 Query: 5 TQLEALGADINDPLWSAACLITKP---------HLIKEVHMQYLEAGADVIISSSYQA 151 T+LE G +IN P+WSAA ++ +++E++ ++ AGA+++++ +YQA Sbjct: 26 TELENRGININSPVWSAAPFTSESFWEPSSQERKVVEEMYRDFMIAGANILMTITYQA 83
>METH_VIBFI (Q9AJQ8) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 36.6 bits (83), Expect = 0.019 Identities = 12/31 (38%), Positives = 26/31 (83%) Frame = +2 Query: 62 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 154 ++++P +I+++H YLEAGAD++ ++++ AT Sbjct: 59 VLSQPQIIRDIHEAYLEAGADILETNTFNAT 89
>METH_VIBF1 (Q5E814) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 36.6 bits (83), Expect = 0.019 Identities = 12/31 (38%), Positives = 26/31 (83%) Frame = +2 Query: 62 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 154 ++++P +I+++H YLEAGAD++ ++++ AT Sbjct: 59 VLSQPQIIRDIHEAYLEAGADILETNTFNAT 89
>SAM4_YEAST (Q08985) Homocysteine S-methyltransferase 2 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (S-adenosylmethionine metabolism protein 4) Length = 325 Score = 34.7 bits (78), Expect = 0.071 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 10/60 (16%) Frame = +2 Query: 5 TQLEALGADINDPLWSAACLITKPH----------LIKEVHMQYLEAGADVIISSSYQAT 154 T+LE G + +P+WS I++ ++KE+ +L AGA+++++++YQ + Sbjct: 26 TELENRGIKVANPVWSTIPFISESFWSDESSANRKIVKEMFNDFLNAGAEILMTTTYQTS 85
>METH_HUMAN (Q99707) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent) (MS) Length = 1265 Score = 34.3 bits (77), Expect = 0.093 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = +2 Query: 65 ITKPHLIKEVHMQYLEAGADVIISSSYQAT 154 IT+P +I ++H +YL AGAD+I ++++ +T Sbjct: 72 ITQPDVIYQIHKEYLLAGADIIETNTFSST 101
>METH_CAEEL (Q09582) Probable methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent) (MS) Length = 1249 Score = 33.9 bits (76), Expect = 0.12 Identities = 13/30 (43%), Positives = 22/30 (73%) Frame = +2 Query: 65 ITKPHLIKEVHMQYLEAGADVIISSSYQAT 154 IT+P +I ++H YLEAGAD + ++++ T Sbjct: 60 ITRPDIIYKIHKLYLEAGADFVETNTFSGT 89
>METH_SALTY (P37586) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 33.5 bits (75), Expect = 0.16 Identities = 12/31 (38%), Positives = 23/31 (74%) Frame = +2 Query: 62 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 154 +++KP +I +H Y EAGAD+I ++++ +T Sbjct: 56 VLSKPEVIAAIHNAYFEAGADIIETNTFNST 86
>METH_ECOLI (P13009) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12-dependent isozyme) (MS) Length = 1226 Score = 33.5 bits (75), Expect = 0.16 Identities = 12/31 (38%), Positives = 23/31 (74%) Frame = +2 Query: 62 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 154 +++KP +I +H Y EAGAD+I ++++ +T Sbjct: 56 VLSKPEVIAAIHNAYFEAGADIIETNTFNST 86
>METH_PSEPU (O33465) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) (Fragment) Length = 607 Score = 31.2 bits (69), Expect = 0.79 Identities = 11/31 (35%), Positives = 23/31 (74%) Frame = +2 Query: 62 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 154 L+++P +I + YL+AGAD++ ++++ AT Sbjct: 60 LLSRPDVIAAIEKAYLDAGADILETNTFNAT 90
>METH_MYCTU (O33259) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1192 Score = 30.0 bits (66), Expect = 1.8 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 5 TQLEALGADINDPLWSAACLI----TKPHLIKEVHMQYLEAGADVIISSSY 145 TQL+A ++D C T+P +++ +H Y EAGAD + ++++ Sbjct: 30 TQLQAADLTLDDFRGLEGCNEILNETRPDVLETIHRNYFEAGADAVETNTF 80
>METH_MYCLE (Q49775) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1206 Score = 30.0 bits (66), Expect = 1.8 Identities = 9/26 (34%), Positives = 21/26 (80%) Frame = +2 Query: 68 TKPHLIKEVHMQYLEAGADVIISSSY 145 T+P +++ +H +Y EAGAD++ ++++ Sbjct: 57 TRPDVLETIHRRYFEAGADLVETNTF 82
>METH_SYNY3 (Q55786) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1195 Score = 30.0 bits (66), Expect = 1.8 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 68 TKPHLIKEVHMQYLEAGADVIISSSYQAT 154 TKP + VH + EAGADV+ + ++ T Sbjct: 52 TKPEAVATVHRAFYEAGADVVETDTFGGT 80
>AMELY_PANTR (Q861X8) Amelogenin, Y isoform precursor (Fragment)| Length = 203 Score = 29.6 bits (65), Expect = 2.3 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +1 Query: 64 HHQAAPHQGGPYAVS*SWRRRHHLLVLPGNYPGVPGQRTAP 186 HHQ P + ++ + + HH+ V+P P VP Q P Sbjct: 77 HHQIIPVVSQQHPLTHTLQSHHHIPVVPAQQPRVPQQAMMP 117
>AMEL_PIG (P45561) Amelogenin precursor (Amelogenin 173A/173B) (Leucine-rich| amelogenin peptide) (LRAP) Length = 189 Score = 28.9 bits (63), Expect = 3.9 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +1 Query: 64 HHQAAPHQGGPYAVS*SWRRRHHLLVLPGNYPGVPGQRTAP 186 HHQ P S + + HH+ ++P PG+P Q P Sbjct: 63 HHQIIPVVSQQTPQSHALQPHHHIPMVPAQQPGIPQQPMMP 103
>NELFD_HUMAN (Q8IXH7) Negative elongation factor C/D (NELF-C/D) (TH1-like| protein) Length = 590 Score = 28.1 bits (61), Expect = 6.7 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 10/66 (15%) Frame = -2 Query: 187 EEQSSGQEPRDSCLVGRGDDDVGASFKILHM----------DLLDEVRLGDEAGGAPERV 38 +E GQ+ DS G G+DD + LH + + ++ +AGG+PE V Sbjct: 23 DEADGGQQEDDS---GEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENV 79 Query: 37 VDVGAE 20 + + +E Sbjct: 80 IQLLSE 85
>TRUA_BIFLO (Q8CY46) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 303 Score = 28.1 bits (61), Expect = 6.7 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 166 EPRDSCLVGRGDDDVGASFKILHMDLLDEV 77 EP + GR D V AS ++ H+D+ DEV Sbjct: 48 EPLRLTVAGRTDTGVHASHQVAHLDVSDEV 77
>AMELX_RAT (P63278) Amelogenin, X isoform precursor (Leucine-rich amelogenin| peptide) (LRAP) Length = 210 Score = 27.7 bits (60), Expect = 8.7 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 64 HHQAAPHQGGPYAVS*SWRRRHHLLVLPGNYPGVPGQRTAP 186 HHQ P + S + + HHL V+P P P Q P Sbjct: 77 HHQIIPVLSQQHPPSHTLQPHHHLPVVPAQQPVAPQQPMMP 117
>AMELX_MOUSE (P63277) Amelogenin, X isoform precursor (Leucine-rich amelogenin| peptide) (LRAP) Length = 210 Score = 27.7 bits (60), Expect = 8.7 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 64 HHQAAPHQGGPYAVS*SWRRRHHLLVLPGNYPGVPGQRTAP 186 HHQ P + S + + HHL V+P P P Q P Sbjct: 77 HHQIIPVLSQQHPPSHTLQPHHHLPVVPAQQPVAPQQPMMP 117
>NELFD_MOUSE (Q922L6) Negative elongation factor D (NELF-D) (TH1-like protein)| Length = 591 Score = 27.7 bits (60), Expect = 8.7 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Frame = -2 Query: 187 EEQSSGQEPRDSCLVGRGDDDVGASFKILHM----------DLLDEVRLGDEAGGAPERV 38 EE GQ D G G+DD + LH + + ++ +AGG+PE V Sbjct: 23 EEADGGQHQEDDS--GEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENV 80 Query: 37 VDVGAE 20 + + +E Sbjct: 81 IQLLSE 86
>OPA_DROME (P39768) Pair-rule protein odd-paired| Length = 609 Score = 27.7 bits (60), Expect = 8.7 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +1 Query: 64 HHQAAPHQGGPYAVS*SWRRRHHLLVLP 147 HHQAAP G A + HHLL P Sbjct: 535 HHQAAPSPGAAAASASMLHHNHHLLYHP 562 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,804,348 Number of Sequences: 219361 Number of extensions: 441862 Number of successful extensions: 1471 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 1438 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1470 length of database: 80,573,946 effective HSP length: 38 effective length of database: 72,238,228 effective search space used: 1733717472 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
