ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast69h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 285 5e-74
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 188 8e-45
3gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 188 8e-45
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 188 8e-45
5dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 8e-36
6dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.020
7ref|XM_515380.1| PREDICTED: Pan troglodytes LOC459125 (LOC459125... 44 0.31
8ref|NM_001029883.1| Homo sapiens similar to cDNA sequence BC0270... 44 0.31
9gb|AC105398.3| Homo sapiens BAC clone RP11-656O12 from 2, comple... 44 0.31
10gb|AC105081.4| Homo sapiens chromosome 8, clone CTC-788C1, compl... 42 1.2
11gb|AE004457.1| Pseudomonas aeruginosa PAO1, section 18 of 529 of... 42 1.2
12dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.2
13dbj|AP003351.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.2
14gb|AC149084.5| Mus musculus BAC clone RP23-173A12 from chromosom... 40 4.8
15ref|XM_597110.2| PREDICTED: Bos taurus similar to Protein KIAA07... 40 4.8
16gb|AC145549.3| Mus musculus BAC clone RP23-21M23 from chromosome... 40 4.8
17gb|AC132957.3| Mus musculus BAC clone RP23-149E9 from chromosome... 40 4.8
18emb|Z92967.1|CEF14D1 Caenorhabditis elegans Cosmid F14D1, comple... 40 4.8
19emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, com... 40 4.8
20emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 4.8
21emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.8
22emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 40 4.8
23emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 4.8
24emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genom... 40 4.8
25gb|DQ397556.1| Cenarchaeum symbiosum clone C13A10, complete sequ... 40 4.8
26dbj|AB207867.1| Escherichia coli transposon Tn2610, complete seq... 40 4.8
27gb|AF261825.2| Salmonella enterica subsp. enterica serovar Typhi... 40 4.8
28gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.8
29gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 4.8
30gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 4.8
31dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 4.8
32gb|AC073218.6| Homo sapiens BAC clone RP11-529E15 from 2, comple... 40 4.8
33gb|AE004755.1| Pseudomonas aeruginosa PAO1, section 316 of 529 o... 40 4.8
34gb|AF240624.1|AF240624 Homo sapiens clone 11qtel_2072draft_c seq... 40 4.8
35dbj|AB103506.1| Serratia marcescens tnpR, blaTEM, rmtB, orfA gen... 40 4.8
36emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Mu... 40 4.8
37gb|AF071555.1|AF071555 Salmonella typhimurium DT104 antibiotic r... 40 4.8
38dbj|AP003039.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.8
39gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 4.8
40gb|AC170878.4| Mus musculus BAC clone RP24-226F17 from chromosom... 40 4.8
41emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on ch... 40 4.8 
>dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A09, full
           insert sequence
          Length = 1661

 Score =  285 bits (144), Expect = 5e-74
 Identities = 228/256 (89%)
 Strand = Plus / Plus

                                                                       
Query: 91  gggcgtcgaggagatcgtcatcgccggcgccaggctcgccggactcgccacggccctggg 150
           |||||||||||  |||||||||||||||||| | ||||| || ||||| ||||| || ||
Sbjct: 114 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 173

                                                                       
Query: 151 gttgcacaggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtc 210
           ||| ||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 174 gttacacaggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtc 233

                                                                       
Query: 211 ggggtacgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgtcgg 270
            |||| ||||||||  |||||||| |||||||||||||||||||| ||||| || |||||
Sbjct: 234 cgggttcgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcgg 293

                                                                       
Query: 271 ggacaagatcagggagcaccacctgctctacgagaggctggtggccttctctgcatccac 330
            ||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct: 294 cgacaagatcagggagcatcatctgctctacgagaggctgttggccttctctgcatccac 353

                           
Query: 331 aggcgaggctgccgcg 346
            || ||| ||||||||
Sbjct: 354 gggagagcctgccgcg 369
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  188 bits (95), Expect = 8e-45
 Identities = 137/151 (90%)
 Strand = Plus / Plus

                                                                           
Query: 157     caggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggta 216
               ||||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| 
Sbjct: 2946684 caggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtccgggtt 2946743

                                                                           
Query: 217     cgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaa 276
               ||||||||  |||||||| |||||||||||||||||||| ||||| || ||||| |||||
Sbjct: 2946744 cgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaa 2946803

                                              
Query: 277     gatcagggagcaccacctgctctacgagagg 307
               |||||||||||| || |||||||||||||||
Sbjct: 2946804 gatcagggagcatcatctgctctacgagagg 2946834



 Score =  121 bits (61), Expect = 2e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                           
Query: 171     ggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgcgttcaacacat 230
               ||||||||||||||||||||||| ||||||||||| |||| ||||  ||||||| |||||
Sbjct: 2943674 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 2943733

                                                                
Query: 231     ggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaagat 279
               |||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 2943734 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 2943782



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                           
Query: 91      gggcgtcgaggagatcgtcatcgccggcgccaggctcgccggactcgccacggccctggg 150
               |||||||||||  |||||||||||||||||| | ||||| || ||||| ||||| || ||
Sbjct: 2946505 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 2946564

                         
Query: 151     gttgcacagg 160
               ||| ||||||
Sbjct: 2946565 gttacacagg 2946574



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 100     ggagatcgtcatcgccggcgccaggctcgccggactcgc 138
               |||||||||||||||||||||| | |||||||| |||||
Sbjct: 2943520 ggagatcgtcatcgccggcgccggcctcgccgggctcgc 2943558



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                         
Query: 305     aggctggtggccttctctgcatccac 330
               ||||||||||||||||||||||||||
Sbjct: 2975690 aggctggtggccttctctgcatccac 2975715



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                         
Query: 305     aggctggtggccttctctgcatccacaggcgaggctgccgcg 346
               |||||| ||||||||||||||||||| || ||| ||||||||
Sbjct: 2947307 aggctgttggccttctctgcatccacgggagagcctgccgcg 2947348



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 178     ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 215
               |||||||||||||||| ||  ||| |||||||||||||
Sbjct: 2940419 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2940456



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 178     ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 215
               |||||||||||||||| ||  ||| |||||||||||||
Sbjct: 2916789 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2916826
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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0016I15, complete sequence
          Length = 166282

 Score =  188 bits (95), Expect = 8e-45
 Identities = 137/151 (90%)
 Strand = Plus / Plus

                                                                         
Query: 157   caggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggta 216
             ||||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| 
Sbjct: 84171 caggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtccgggtt 84230

                                                                         
Query: 217   cgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaa 276
             ||||||||  |||||||| |||||||||||||||||||| ||||| || ||||| |||||
Sbjct: 84231 cgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaa 84290

                                            
Query: 277   gatcagggagcaccacctgctctacgagagg 307
             |||||||||||| || |||||||||||||||
Sbjct: 84291 gatcagggagcatcatctgctctacgagagg 84321



 Score =  121 bits (61), Expect = 2e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                         
Query: 171   ggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgcgttcaacacat 230
             ||||||||||||||||||||||| ||||||||||| |||| ||||  ||||||| |||||
Sbjct: 81161 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 81220

                                                              
Query: 231   ggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaagat 279
             |||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 81221 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 81269



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                         
Query: 91    gggcgtcgaggagatcgtcatcgccggcgccaggctcgccggactcgccacggccctggg 150
             |||||||||||  |||||||||||||||||| | ||||| || ||||| ||||| || ||
Sbjct: 83992 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 84051

                       
Query: 151   gttgcacagg 160
             ||| ||||||
Sbjct: 84052 gttacacagg 84061



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 100   ggagatcgtcatcgccggcgccaggctcgccggactcgc 138
             |||||||||||||||||||||| | |||||||| |||||
Sbjct: 81007 ggagatcgtcatcgccggcgccggcctcgccgggctcgc 81045



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 305    aggctggtggccttctctgcatccac 330
              ||||||||||||||||||||||||||
Sbjct: 113177 aggctggtggccttctctgcatccac 113202



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 305   aggctggtggccttctctgcatccacaggcgaggctgccgcg 346
             |||||| ||||||||||||||||||| || ||| ||||||||
Sbjct: 84794 aggctgttggccttctctgcatccacgggagagcctgccgcg 84835



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 178   ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 215
             |||||||||||||||| ||  ||| |||||||||||||
Sbjct: 77906 ggtgctggagtcgtcgccggagctccgggcgtcggggt 77943



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 178   ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 215
             |||||||||||||||| ||  ||| |||||||||||||
Sbjct: 54276 ggtgctggagtcgtcgccggagctccgggcgtcggggt 54313
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  188 bits (95), Expect = 8e-45
 Identities = 137/151 (90%)
 Strand = Plus / Plus

                                                                           
Query: 157     caggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggta 216
               ||||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| 
Sbjct: 2946795 caggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtccgggtt 2946854

                                                                           
Query: 217     cgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaa 276
               ||||||||  |||||||| |||||||||||||||||||| ||||| || ||||| |||||
Sbjct: 2946855 cgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaa 2946914

                                              
Query: 277     gatcagggagcaccacctgctctacgagagg 307
               |||||||||||| || |||||||||||||||
Sbjct: 2946915 gatcagggagcatcatctgctctacgagagg 2946945



 Score =  121 bits (61), Expect = 2e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                           
Query: 171     ggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgcgttcaacacat 230
               ||||||||||||||||||||||| ||||||||||| |||| ||||  ||||||| |||||
Sbjct: 2943785 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 2943844

                                                                
Query: 231     ggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaagat 279
               |||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 2943845 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 2943893



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                           
Query: 91      gggcgtcgaggagatcgtcatcgccggcgccaggctcgccggactcgccacggccctggg 150
               |||||||||||  |||||||||||||||||| | ||||| || ||||| ||||| || ||
Sbjct: 2946616 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 2946675

                         
Query: 151     gttgcacagg 160
               ||| ||||||
Sbjct: 2946676 gttacacagg 2946685



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 100     ggagatcgtcatcgccggcgccaggctcgccggactcgc 138
               |||||||||||||||||||||| | |||||||| |||||
Sbjct: 2943631 ggagatcgtcatcgccggcgccggcctcgccgggctcgc 2943669



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                         
Query: 305     aggctggtggccttctctgcatccac 330
               ||||||||||||||||||||||||||
Sbjct: 2975801 aggctggtggccttctctgcatccac 2975826



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                         
Query: 305     aggctggtggccttctctgcatccacaggcgaggctgccgcg 346
               |||||| ||||||||||||||||||| || ||| ||||||||
Sbjct: 2947418 aggctgttggccttctctgcatccacgggagagcctgccgcg 2947459



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 178     ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 215
               |||||||||||||||| ||  ||| |||||||||||||
Sbjct: 2940530 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2940567



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 178     ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 215
               |||||||||||||||| ||  ||| |||||||||||||
Sbjct: 2916900 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2916937
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>dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118I15, full
           insert sequence
          Length = 1518

 Score =  159 bits (80), Expect = 8e-36
 Identities = 155/180 (86%)
 Strand = Plus / Plus

                                                                       
Query: 100 ggagatcgtcatcgccggcgccaggctcgccggactcgccacggccctggggttgcacag 159
           |||||||||||||||||||||| | |||||||| |||||   |||||| ||  |||||||
Sbjct: 100 ggagatcgtcatcgccggcgccggcctcgccgggctcgcagtggccctcggactgcacag 159

                                                                       
Query: 160 gaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgc 219
           ||||||  |  ||||||||||||||||||||||| ||||||||||| |||| ||||  ||
Sbjct: 160 gaaaggactgaggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggc 219

                                                                       
Query: 220 gttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaagat 279
           ||||| ||||||||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 220 gttcatcacatggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 279
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>dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B02, full
           insert sequence
          Length = 1590

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 81/100 (81%)
 Strand = Plus / Plus

                                                                       
Query: 116 ggcgccaggctcgccggactcgccacggccctggggttgcacaggaaaggggttcggagc 175
           |||||| || ||||||| ||||||  ||| || ||| ||||||||||||||||   | ||
Sbjct: 277 ggcgccgggatcgccggcctcgccgtggctctcgggctgcacaggaaaggggtgaagtgc 336

                                                   
Query: 176 gtggtgctggagtcgtcggcgacgctgcgggcgtcggggt 215
             ||||||| |||||||| ||  ||| |||||||||||||
Sbjct: 337 tcggtgctgaagtcgtcgccggagctccgggcgtcggggt 376
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>ref|XM_515380.1| PREDICTED: Pan troglodytes LOC459125 (LOC459125), mRNA
          Length = 4679

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 303  agaggctggtggccttctctgc 324
            ||||||||||||||||||||||
Sbjct: 2851 agaggctggtggccttctctgc 2830
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>ref|NM_001029883.1| Homo sapiens similar to cDNA sequence BC027072 (FLJ34931), mRNA
          Length = 7044

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 303  agaggctggtggccttctctgc 324
            ||||||||||||||||||||||
Sbjct: 2851 agaggctggtggccttctctgc 2830
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>gb|AC105398.3| Homo sapiens BAC clone RP11-656O12 from 2, complete sequence
          Length = 170262

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 303    agaggctggtggccttctctgc 324
              ||||||||||||||||||||||
Sbjct: 108271 agaggctggtggccttctctgc 108292
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>gb|AC105081.4| Homo sapiens chromosome 8, clone CTC-788C1, complete sequence
          Length = 158605

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 305   aggctggtggccttctctgca 325
             |||||||||||||||||||||
Sbjct: 96141 aggctggtggccttctctgca 96161
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>gb|AE004457.1| Pseudomonas aeruginosa PAO1, section 18 of 529 of the complete genome
          Length = 10239

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 103  gatcgtcatcgccggcgccaggctcgccg 131
            ||||||||||| |||||||| ||||||||
Sbjct: 8428 gatcgtcatcgtcggcgccatgctcgccg 8456
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 190     gtcggcgacgctgcgggcgtcgggg 214
               |||||||| ||||||||||||||||
Sbjct: 7304928 gtcggcgaagctgcgggcgtcgggg 7304904
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>dbj|AP003351.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1184D12
          Length = 176854

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 305   aggctggtggccttctctgca 325
             |||||||||||||||||||||
Sbjct: 18593 aggctggtggccttctctgca 18573
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>gb|AC149084.5| Mus musculus BAC clone RP23-173A12 from chromosome 19, complete
             sequence
          Length = 188848

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 78    tgcggtggatggagggcgtcgaggagat 105
             ||||||||| |||||| |||||||||||
Sbjct: 74081 tgcggtggagggagggagtcgaggagat 74108
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>ref|XM_597110.2| PREDICTED: Bos taurus similar to Protein KIAA0711 (LOC518907), mRNA
          Length = 1926

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 111  tcgccggcgccaggctcgcc 130
            ||||||||||||||||||||
Sbjct: 1796 tcgccggcgccaggctcgcc 1777
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>gb|AC145549.3| Mus musculus BAC clone RP23-21M23 from chromosome 19, complete sequence
          Length = 247655

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 78     tgcggtggatggagggcgtcgaggagat 105
              ||||||||| |||||| |||||||||||
Sbjct: 132864 tgcggtggagggagggagtcgaggagat 132891
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>gb|AC132957.3| Mus musculus BAC clone RP23-149E9 from chromosome 19, complete sequence
          Length = 246177

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 78     tgcggtggatggagggcgtcgaggagat 105
              ||||||||| |||||| |||||||||||
Sbjct: 193068 tgcggtggagggagggagtcgaggagat 193095
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>emb|Z92967.1|CEF14D1 Caenorhabditis elegans Cosmid F14D1, complete sequence
          Length = 32703

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 92    ggcgtcgaggagatcgtcatcgcc 115
             |||| |||||||||||||||||||
Sbjct: 11221 ggcgacgaggagatcgtcatcgcc 11198
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>emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, complete sequence
          Length = 174698

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 34    ttcaccactctgctatttctttcc 57
             |||||||||||||| |||||||||
Sbjct: 36172 ttcaccactctgctctttctttcc 36195
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 234    ccaacgccttccgcgcgctcgatgccctcggcgtcggggacaag 277
              |||||||||||| |||| |||| || || |||||||| ||||||
Sbjct: 808987 ccaacgccttccacgcgttcgacgcgctgggcgtcggcgacaag 809030
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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 245    cgcgcgctcgatgccctcggcgtc 268
              |||||||||||||||| |||||||
Sbjct: 296650 cgcgcgctcgatgcccgcggcgtc 296627
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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 245    cgcgcgctcgatgccctcggcgtc 268
              |||||||||||||||| |||||||
Sbjct: 208128 cgcgcgctcgatgcccgcggcgtc 208105
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 245    cgcgcgctcgatgccctcggcgtc 268
              |||||||||||||||| |||||||
Sbjct: 190370 cgcgcgctcgatgcccgcggcgtc 190393
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>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16
          Length = 349635

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 101    gagatcgtcatcgccggcgccagg 124
              ||||||| ||||||||||||||||
Sbjct: 281435 gagatcgccatcgccggcgccagg 281458
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>gb|DQ397556.1| Cenarchaeum symbiosum clone C13A10, complete sequence
          Length = 40870

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   acaggcgaggctgccgcgga 348
             ||||||||||||||||||||
Sbjct: 14235 acaggcgaggctgccgcgga 14254
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>dbj|AB207867.1| Escherichia coli transposon Tn2610, complete sequence
          Length = 23883

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  gagaggctggtggccttctc 321
            ||||||||||||||||||||
Sbjct: 8926 gagaggctggtggccttctc 8907
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>gb|AF261825.2| Salmonella enterica subsp. enterica serovar Typhimurium genomic island
             I, complete sequence
          Length = 47723

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   gagaggctggtggccttctc 321
             ||||||||||||||||||||
Sbjct: 35977 gagaggctggtggccttctc 35958
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 250     gctcgatgccctcggcgtcg 269
               ||||||||||||||||||||
Sbjct: 3350422 gctcgatgccctcggcgtcg 3350441
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 249     cgctcgatgccctcggcgtc 268
               ||||||||||||||||||||
Sbjct: 3057535 cgctcgatgccctcggcgtc 3057554
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 96      tcgaggagatcgtcatcgccggcg 119
               |||| |||||||||||||||||||
Sbjct: 4999118 tcgacgagatcgtcatcgccggcg 4999095
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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     cgtcgaggagatcgtcatcg 113
              ||||||||||||||||||||
Sbjct: 992638 cgtcgaggagatcgtcatcg 992619
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>gb|AC073218.6| Homo sapiens BAC clone RP11-529E15 from 2, complete sequence
          Length = 150263

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 162   aaggggttcggagcgtggtgctgg 185
             |||||||| |||||||||||||||
Sbjct: 94399 aaggggtttggagcgtggtgctgg 94376
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>gb|AE004755.1| Pseudomonas aeruginosa PAO1, section 316 of 529 of the complete
            genome
          Length = 14759

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 102  agatcgtcatcgccggcgcc 121
            ||||||||||||||||||||
Sbjct: 8363 agatcgtcatcgccggcgcc 8382
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>gb|AF240624.1|AF240624 Homo sapiens clone 11qtel_2072draft_c sequence
          Length = 12583

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  gaggctggtggccttctctg 323
            ||||||||||||||||||||
Sbjct: 5502 gaggctggtggccttctctg 5521
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>dbj|AB103506.1| Serratia marcescens tnpR, blaTEM, rmtB, orfA genes for resolvase,
            beta-lactamase TEM-1, 16S rRNA methylase, hypothetical
            protein, partial and complete cds
          Length = 4566

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  gagaggctggtggccttctc 321
            ||||||||||||||||||||
Sbjct: 3710 gagaggctggtggccttctc 3729
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>emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Multi-Drug Resistance in
             Acinetobacter baumannii
          Length = 100001

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   gagaggctggtggccttctc 321
             ||||||||||||||||||||
Sbjct: 38555 gagaggctggtggccttctc 38536



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   gagaggctggtggccttctc 321
             ||||||||||||||||||||
Sbjct: 33442 gagaggctggtggccttctc 33423
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>gb|AF071555.1|AF071555 Salmonella typhimurium DT104 antibiotic resistance gene cluster,
            complete sequence
          Length = 13077

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  gagaggctggtggccttctc 321
            ||||||||||||||||||||
Sbjct: 9939 gagaggctggtggccttctc 9920
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>dbj|AP003039.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-116B3, complete
              sequence
          Length = 152252

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    gaggctggtggccttctctg 323
              ||||||||||||||||||||
Sbjct: 110442 gaggctggtggccttctctg 110461
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 249     cgctcgatgccctcggcgtc 268
               ||||||||||||||||||||
Sbjct: 4794443 cgctcgatgccctcggcgtc 4794462
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>gb|AC170878.4| Mus musculus BAC clone RP24-226F17 from chromosome 19, complete
             sequence
          Length = 148454

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 78    tgcggtggatggagggcgtcgaggagat 105
             ||||||||| |||||| |||||||||||
Sbjct: 11854 tgcggtggagggagggagtcgaggagat 11881
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>emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on chromosome 2, complete
             sequence
          Length = 196078

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   cagggagcaccacctgctct 299
             ||||||||||||||||||||
Sbjct: 64851 cagggagcaccacctgctct 64832


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,249,833
Number of Sequences: 3902068
Number of extensions: 2249833
Number of successful extensions: 45799
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44994
Number of HSP's gapped (non-prelim): 804
length of query: 361
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 339
effective length of database: 17,147,199,772
effective search space: 5812900722708
effective search space used: 5812900722708
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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