ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast69h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RD22_ARATH (Q08298) Dehydration-responsive protein RD22 precursor 34 0.094
2EA92_VICFA (P21747) Embryonic abundant protein USP92 precursor 31 1.0
3EA30_VICFA (P21745) Embryonic abundant protein VF30.1 precursor 31 1.0
4EA87_VICFA (P21746) Embryonic abundant protein USP87 precursor 30 1.8
5SVF30_VICFA (P09059) Unknown seed protein 30.1 precursor (VF30.1) 29 3.0
6EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline... 28 6.8
7RIR1_HUMAN (P23921) Ribonucleoside-diphosphate reductase large s... 28 8.8

>RD22_ARATH (Q08298) Dehydration-responsive protein RD22 precursor|
          Length = 392

 Score = 34.3 bits (77), Expect = 0.094
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +2

Query: 2  QYWESALPNTPMPSSLSQLL 61
          +YW +ALPNTP+P+SL  LL
Sbjct: 27 RYWSTALPNTPIPNSLHNLL 46



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>EA92_VICFA (P21747) Embryonic abundant protein USP92 precursor|
          Length = 268

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 5  YWESALPNTPMPSSLSQLL 61
          YW+S  PNTP+P + S LL
Sbjct: 28 YWQSIWPNTPLPKTFSDLL 46



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>EA30_VICFA (P21745) Embryonic abundant protein VF30.1 precursor|
          Length = 268

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 5  YWESALPNTPMPSSLSQLL 61
          YW+S  PNTP+P + S LL
Sbjct: 28 YWQSIWPNTPLPKTFSDLL 46



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>EA87_VICFA (P21746) Embryonic abundant protein USP87 precursor|
          Length = 268

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 5  YWESALPNTPMPSSLSQLL 61
          YW+S  PNTP+P + S +L
Sbjct: 28 YWQSIWPNTPLPKTFSDML 46



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>SVF30_VICFA (P09059) Unknown seed protein 30.1 precursor (VF30.1)|
          Length = 268

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 5  YWESALPNTPMPSSLSQL 58
          YW+S  PNTP+P + S L
Sbjct: 28 YWQSIWPNTPLPKTFSDL 45



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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 129 PWPASTWTPPEPTFTDVPPA 70
           P P+ T++PP PT++  PP+
Sbjct: 276 PQPSPTYSPPPPTYSPPPPS 295



 Score = 27.7 bits (60), Expect = 8.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 129 PWPASTWTPPEPTFTDVPPA 70
           P P  T++PP PT++  PPA
Sbjct: 442 PPPPPTYSPPPPTYSPPPPA 461



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>RIR1_HUMAN (P23921) Ribonucleoside-diphosphate reductase large subunit (EC|
           1.17.4.1) (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain)
          Length = 792

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 81  VPPACVSRS*ERELGMGVLGRADS 10
           VP AC+S    R +G+GV G AD+
Sbjct: 488 VPEACLSNKRHRPIGIGVQGLADA 511


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,680,374
Number of Sequences: 219361
Number of extensions: 256478
Number of successful extensions: 845
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 80,573,946
effective HSP length: 33
effective length of database: 73,335,033
effective search space used: 1760040792
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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