ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast69g10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL929069.10| Mouse DNA sequence from clone RP23-466O21 on chromosome 2, complete sequence Length = 118299 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 atgagcaggcgggcggtggagc 336 |||||||||||||||||||||| Sbjct: 33362 atgagcaggcgggcggtggagc 33383
>ref|XM_515705.1| PREDICTED: Pan troglodytes beta-galactosamide alpha-2,6-sialyltransferase II (ST6Gal II), mRNA Length = 1749 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 acccagctccctctccttcct 65 ||||||||||||||||||||| Sbjct: 276 acccagctccctctccttcct 296
>ref|NM_032528.1| Homo sapiens ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 (ST6GAL2), mRNA Length = 1793 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 acccagctccctctccttcct 65 ||||||||||||||||||||| Sbjct: 292 acccagctccctctccttcct 312
>gb|AC110566.17| Mus musculus chromosome 5, clone RP23-300A10, complete sequence Length = 175471 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 ccccgcgccgccgccctccct 211 ||||||||||||||||||||| Sbjct: 92308 ccccgcgccgccgccctccct 92328
>ref|NM_007941.1| Mus musculus epimorphin (Epim), mRNA Length = 2931 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 ccccgcgccgccgccctccct 211 ||||||||||||||||||||| Sbjct: 56 ccccgcgccgccgccctccct 36
>emb|AJ627625.1| Pan troglodytes partial mRNA for beta-galactosamide alpha-2,6-sialyltransferase II Length = 1590 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 acccagctccctctccttcct 65 ||||||||||||||||||||| Sbjct: 117 acccagctccctctccttcct 137
>gb|AC016994.8| Homo sapiens BAC clone RP11-19J8 from 2, complete sequence Length = 48827 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 acccagctccctctccttcct 65 ||||||||||||||||||||| Sbjct: 26241 acccagctccctctccttcct 26221
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 catctcccccgcgccgccgcc 205 ||||||||||||||||||||| Sbjct: 2738353 catctcccccgcgccgccgcc 2738373 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 atctcccccgcgccgccgcc 205 |||||||||||||||||||| Sbjct: 23248361 atctcccccgcgccgccgcc 23248342
>dbj|AB059555.1| Homo sapiens ST6Gal II mRNA for alpha 2,6-sialyltransferase, complete cds Length = 1793 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 acccagctccctctccttcct 65 ||||||||||||||||||||| Sbjct: 292 acccagctccctctccttcct 312
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 cctcccctcgccggcgccgtc 119 ||||||||||||||||||||| Sbjct: 2543888 cctcccctcgccggcgccgtc 2543908
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 catctcccccgcgccgccgcc 205 ||||||||||||||||||||| Sbjct: 6581 catctcccccgcgccgccgcc 6601
>dbj|AP005191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0479D12 Length = 148362 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 catctcccccgcgccgccgcc 205 ||||||||||||||||||||| Sbjct: 140575 catctcccccgcgccgccgcc 140595
>gb|BC008680.1| Homo sapiens ST6 beta-galactosamide alpha-2,6-sialyltranferase 2, mRNA (cDNA clone MGC:9765 IMAGE:3856171), complete cds Length = 1603 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 acccagctccctctccttcct 65 ||||||||||||||||||||| Sbjct: 292 acccagctccctctccttcct 312
>gb|M22638.1|HUMLYL1B Human LYL-1 protein gene, complete cds Length = 4569 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 gcgcggcctcccggccgcccc 160 ||||||||||||||||||||| Sbjct: 522 gcgcggcctcccggccgcccc 502
>dbj|D10475.1|MUSEPIM Mus musculus mRNA for epimorphin, complete cds Length = 2931 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 ccccgcgccgccgccctccct 211 ||||||||||||||||||||| Sbjct: 56 ccccgcgccgccgccctccct 36
>dbj|AB058780.1| Homo sapiens mRNA for KIAA1877 protein, partial cds Length = 6782 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 acccagctccctctccttcct 65 ||||||||||||||||||||| Sbjct: 236 acccagctccctctccttcct 256
>ref|XM_466548.1| Oryza sativa (japonica cultivar-group), mRNA Length = 507 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 atctcccccgcgccgccgcc 205 |||||||||||||||||||| Sbjct: 140 atctcccccgcgccgccgcc 121
>ref|NM_189335.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 282 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ctcccctcgccggcgccgtc 119 |||||||||||||||||||| Sbjct: 171 ctcccctcgccggcgccgtc 152
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 cccgcgccgccgccctccct 211 |||||||||||||||||||| Sbjct: 2548880 cccgcgccgccgccctccct 2548861
>gb|AC132454.3| Mus musculus BAC clone RP23-127P22 from chromosome 19, complete sequence Length = 225152 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 gaaaaagataaggttttgga 29 |||||||||||||||||||| Sbjct: 101282 gaaaaagataaggttttgga 101263
>gb|AC129335.4| Mus musculus BAC clone RP23-109H7 from chromosome 1, complete sequence Length = 201274 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctgtgaaaaagataaggttt 25 |||||||||||||||||||| Sbjct: 53298 ctgtgaaaaagataaggttt 53317
>gb|AF549406.1| Homo sapiens membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase (PKMYT1) gene, complete cds Length = 9014 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccccgcgccgccgccctccc 210 |||||||||||||||||||| Sbjct: 950 ccccgcgccgccgccctccc 969
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cttcctcgccgcgcaccgcc 79 |||||||||||||||||||| Sbjct: 4915761 cttcctcgccgcgcaccgcc 4915780
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ccctcgccggcgccgtcacc 122 |||||||||||||||||||| Sbjct: 190942 ccctcgccggcgccgtcacc 190961
>emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on chromosome 11 Contains part of the gene for a novel protein (likely ortholog to homo sapiens FLJ38335), complete sequence Length = 198148 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 cccagctccctctccttcctcgcc 69 |||| ||||||||||||||||||| Sbjct: 152737 cccatctccctctccttcctcgcc 152714
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 catctcccccgcgccgccgccctc 208 |||||| ||||||||||||||||| Sbjct: 25014053 catctcgcccgcgccgccgccctc 25014076
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tctcccccgcgccgccgccc 206 |||||||||||||||||||| Sbjct: 26015992 tctcccccgcgccgccgccc 26015973
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ctcccctcgccggcgccgtc 119 |||||||||||||||||||| Sbjct: 42233220 ctcccctcgccggcgccgtc 42233239
>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0401G10 Length = 160704 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ctcccctcgccggcgccgtc 119 |||||||||||||||||||| Sbjct: 5177 ctcccctcgccggcgccgtc 5196
>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1294_F06 Length = 121088 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ctcccctcgccggcgccgtc 119 |||||||||||||||||||| Sbjct: 106418 ctcccctcgccggcgccgtc 106437
>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1226_A12 Length = 113025 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tctcccccgcgccgccgccc 206 |||||||||||||||||||| Sbjct: 53850 tctcccccgcgccgccgccc 53831
>dbj|AP005384.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_D02 Length = 112773 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 atctcccccgcgccgccgcc 205 |||||||||||||||||||| Sbjct: 7507 atctcccccgcgccgccgcc 7488
>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121563 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 catctcccccgcgccgccgccctc 208 |||||| ||||||||||||||||| Sbjct: 117426 catctcgcccgcgccgccgccctc 117403
>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1568_B05 Length = 115325 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 atctcccccgcgccgccgcc 205 |||||||||||||||||||| Sbjct: 105592 atctcccccgcgccgccgcc 105573
>dbj|AK121241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097P14, full insert sequence Length = 2050 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ctcccctcgccggcgccgtc 119 |||||||||||||||||||| Sbjct: 6 ctcccctcgccggcgccgtc 25
>dbj|AK106256.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-E11, full insert sequence Length = 1709 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ctcccctcgccggcgccgtc 119 |||||||||||||||||||| Sbjct: 38 ctcccctcgccggcgccgtc 57
>emb|AJ333592.1|HSA333592 Homo sapiens genomic sequence surrounding NotI site, clone NL6-FG19R Length = 638 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ccttcctcgccgcgcaccgc 78 |||||||||||||||||||| Sbjct: 353 ccttcctcgccgcgcaccgc 334
>gb|AF110776.1|AF110776 Homo sapiens adrenal gland protein AD-003 mRNA, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ccgcgccgccgccctccctt 212 |||||||||||||||||||| Sbjct: 18 ccgcgccgccgccctccctt 37
>dbj|AK066987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093H11, full insert sequence Length = 2202 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ctcccctcgccggcgccgtc 119 |||||||||||||||||||| Sbjct: 27 ctcccctcgccggcgccgtc 46
>dbj|AK065252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J09, full insert sequence Length = 1976 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 catctcccccgcgccgccgccctc 208 |||||| ||||||||||||||||| Sbjct: 424 catctcgcccgcgccgccgccctc 401
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 catctcccccgcgccgccgccctc 208 |||||| ||||||||||||||||| Sbjct: 24942259 catctcgcccgcgccgccgccctc 24942282
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146686 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 catctcccccgcgccgccgccctc 208 |||||| ||||||||||||||||| Sbjct: 93114 catctcgcccgcgccgccgccctc 93091
>gb|AC004233.1|AC004233 Homo sapiens chromosome 16, cosmid clone 380H5 (LANL), complete sequence Length = 36736 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ccccgcgccgccgccctccc 210 |||||||||||||||||||| Sbjct: 7681 ccccgcgccgccgccctccc 7662
>emb|AL732311.13| Mouse DNA sequence from clone RP23-125H15 on chromosome 2, complete sequence Length = 209215 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 ctggggcaagcccagcagga 360 |||||||||||||||||||| Sbjct: 44674 ctggggcaagcccagcagga 44693 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,992,013 Number of Sequences: 3902068 Number of extensions: 2992013 Number of successful extensions: 79494 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78295 Number of HSP's gapped (non-prelim): 1199 length of query: 368 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 346 effective length of database: 17,147,199,772 effective search space: 5932931121112 effective search space used: 5932931121112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
