ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast69g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF218305.1|AF218305 Hordeum vulgare chlorophyll a/b binding p... 684 0.0
2gb|S68728.1| LHC Ib-21=light-harvesting complex I [Hordeum vulga... 414 e-113
3gb|AY106149.1| Zea mays PCO102434 mRNA sequence 351 1e-93
4dbj|AK098864.1| Oryza sativa (japonica cultivar-group) cDNA clon... 272 8e-70
5dbj|AK060904.1| Oryza sativa (japonica cultivar-group) cDNA clon... 272 8e-70
6dbj|AK060800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 272 8e-70
7gb|AF094776.1|AF094776 Oryza sativa chlorophyll a/b-binding prot... 264 2e-67
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
9dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
10gb|AY104104.1| Zea mays PCO079073 mRNA sequence 52 0.001
11gb|AY347803.1| Malus x domestica clone 8-2 chlorophyll a/b-bindi... 50 0.006
12dbj|AB122115.1| Chlamydomonas reinhardtii LhcI-2 gene for light-... 46 0.091
13dbj|AB122118.1| Chlamydomonas reinhardtii LhcI-5 gene for light-... 44 0.36
14emb|AL117328.5|HSA494O16 Human DNA sequence from clone RP11-494O... 42 1.4
15gb|CP000088.1| Thermobifida fusca YX, complete genome 42 1.4
16ref|XM_631624.1| Dictyostelium discoideum AX4 hypothetical prote... 42 1.4
17gb|AC164112.2| Mus musculus BAC clone RP23-266E12 from chromosom... 42 1.4
18gb|AC154201.2| Mus musculus BAC clone RP24-83I8 from chromosome ... 42 1.4
19gb|AF165214.1|AF165214 Bacteriophage D3, complete genome 42 1.4
20emb|Y00379.1|ZMLHCP Maize mRNA for light-harvesting chlorophyll ... 42 1.4
21ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) ... 42 1.4
22dbj|AB019440.1| Homo sapiens DNA for immunoglobulin heavy-chain ... 42 1.4
23gb|AC149531.2| Xenopus tropicalis clone ISB-331C21, complete seq... 40 5.6
24gb|AC101277.16| Mus musculus chromosome 1, clone RP23-101P2, com... 40 5.6
25gb|AC160526.13| Mus musculus chromosome 8, clone RP24-191C23, co... 40 5.6
26ref|XM_507384.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.6
27ref|XM_507383.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.6
28ref|XM_507382.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.6
29ref|XM_478841.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
30ref|XM_507381.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.6
31ref|XM_507380.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.6
32ref|XM_507379.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.6
33ref|XM_506426.2| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.6
34gb|AF154570.2| Mus musculus fibroblast growth factor receptor 1 ... 40 5.6
35gb|AC115341.6| Rattus norvegicus 3 BAC CH230-248O1 (Children's H... 40 5.6
36gb|BC096514.1| Xenopus tropicalis c6.1a protein, mRNA (cDNA clon... 40 5.6
37gb|AC183614.3| Pan troglodytes BAC clone CH251-186N21 from chrom... 40 5.6
38gb|AC142208.3| Homo sapiens chromosome 16 clone XXfos-89260C6, c... 40 5.6
39ref|XM_823936.1| Trypanosoma brucei TREU927 hypothetical protein... 40 5.6
40gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, c... 40 5.6
41gb|AC037471.12| Homo sapiens chromosome 15, clone RP11-810K23, c... 40 5.6
42gb|AY163380.1| Zea mays putative ROP family GTPase ROP6 gene, co... 40 5.6
43gb|AC127381.4| Homo sapiens BAC clone RP11-1360M22 from UL, comp... 40 5.6
44gb|AC087386.7| Homo sapiens chromosome 15, clone RP11-173D3, com... 40 5.6
45emb|AJ245628.1|HSA245628 Homo sapiens EVN gene for pre-pro-enovin 40 5.6
46emb|AL357079.24| Human DNA sequence from clone RP11-7O11 on chro... 40 5.6
47gb|AC069113.9| Homo sapiens chromosome 8, clone RP11-597M17, com... 40 5.6
48gb|AF276759.4| Homo sapiens chromosome 8 clone RP11-420F14 map p... 40 5.6
49ref|NM_001016457.2| Xenopus tropicalis c6.1a protein (c6.1a), mRNA 40 5.6
50emb|AJ278665.1|ZMA278665 Zea mays mRNA for putative Rop family G... 40 5.6
51gb|AC021585.7| Homo sapiens chromosome , clone RP11-96F3, comple... 40 5.6
52gb|AC149383.2| Phakopsora pachyrhizi clone JGIAFNA-5A9, complete... 40 5.6
53gb|AC149146.3| Xenopus tropicalis clone ISB-156G23, complete seq... 40 5.6
54gb|AY125979.1| Zea mays hexokinase mRNA, complete cds 40 5.6
55emb|Z17226.1|PSLHCA411 Pinus sylvestris Lhca4*1-1 gene encoding ... 40 5.6
56gb|AF279892.1| Rattus norvegicus 7-dehydrocholesterol reductase ... 40 5.6
57dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.6
58gb|AF349018.1|F349018S01 Homo sapiens topoisomerase I gene, exon... 40 5.6
59gb|AC104835.3| Homo sapiens chromosome 3 clone RP11-27J5, comple... 40 5.6
60gb|AC015917.30| Homo sapiens chromosome 17, clone CTD-2350C19, c... 40 5.6
61gb|AC005038.5|AC005038 Homo sapiens BAC clone RP11-486I22 from 1... 40 5.6
62gb|AC140838.3| Homo sapiens chromosome 16 clone XXfos-84069G6, c... 40 5.6
63dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
64gb|AC140540.3| Homo sapiens chromosome 16 clone XXfos-88730H2, c... 40 5.6
65gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, co... 40 5.6
66gb|AC087793.17| Homo sapiens chromosome 8, clone RP5-1118A7, com... 40 5.6
67dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.6
68gb|AC135263.5| Homo sapiens chromosome 15, clone RP13-381O4, com... 40 5.6
69dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
70gb|DQ163915.1| Bacteriophage PA11, complete genome 40 5.6
71dbj|AK119176.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
72emb|X64198.1|NTLHC1R N.tabacum LHC-I mRNA for photosystem I ligh... 40 5.6
73emb|Z16409.1|PSLHCA412 P.sylvestris Lhca4*1-2 mRNA encoding Lhca... 40 5.6
74emb|X71965.1|CSCAB2MR C.stellata cab2 mRNA for light harvesting ... 40 5.6
75dbj|AK104651.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
76dbj|AK104608.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
77dbj|AK104283.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
78dbj|AK104177.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
79dbj|AK104127.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
80dbj|AK104016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
81dbj|AK103966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
82dbj|AK070051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
83dbj|AK060987.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
84gb|AY106111.1| Zea mays PCO074668 mRNA sequence 40 5.6
85emb|CR760965.2| Xenopus tropicalis finished cDNA, clone TEgg028n11 40 5.6
86gb|AF115765.1|AF115765 Homo sapiens Artemin gene, alternative fo... 40 5.6
87gb|AC005726.1|AC005726 Homo sapiens chromosome 17, clone hRPK.1... 40 5.6
88gb|AF010321.1|AF010321 Oryza sativa photosystem I antenna protei... 40 5.6
89emb|Y11740.1|HSY11740 H.sapiens whn gene, exon 1a and 1b 40 5.6 
>gb|AF218305.1|AF218305 Hordeum vulgare chlorophyll a/b binding protein precursor (lhca1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 784

 Score =  684 bits (345), Expect = 0.0
 Identities = 345/345 (100%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccgcgcagcaaggagcagccagcatcgagagagcagcaatggctatggcgtcgtcaagcg 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   ccgcgcagcaaggagcagccagcatcgagagagcagcaatggctatggcgtcgtcaagcg 62

                                                                       
Query: 133 ggctcaggagctgcagcgccgtgggcgtgccgagcctgctggcgccttcgtcccggtccg 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ggctcaggagctgcagcgccgtgggcgtgccgagcctgctggcgccttcgtcccggtccg 122

                                                                       
Query: 193 gccgctccggactgccgttctgcgcctacgccaccacctccggccgcgtcaccatgtccg 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gccgctccggactgccgttctgcgcctacgccaccacctccggccgcgtcaccatgtccg 182

                                                                       
Query: 253 ccgagtggttccccggccagccccgccccgcccatctggacggctcctcgccaggggact 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ccgagtggttccccggccagccccgccccgcccatctggacggctcctcgccaggggact 242

                                                                       
Query: 313 tcgggttcgaccccctgggcctcgccaccgtgccggagaacttcgagcggttcaaggagt 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tcgggttcgaccccctgggcctcgccaccgtgccggagaacttcgagcggttcaaggagt 302

                                                        
Query: 373 ccgagatctaccactgccgctgggccatgctctgcgtgccagggg 417
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ccgagatctaccactgccgctgggccatgctctgcgtgccagggg 347
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>gb|S68728.1| LHC Ib-21=light-harvesting complex I [Hordeum vulgare=barley,
           Prato, mRNA Chloroplast, 878 nt]
          Length = 878

 Score =  414 bits (209), Expect = e-113
 Identities = 226/229 (98%), Gaps = 2/229 (0%)
 Strand = Plus / Plus

                                                                       
Query: 190 ccggccgctccggactgccgttctgcgcctacgccaccacctccggccgcgtcaccatgt 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   ccggccgctccggactgccgttctgcgcctacgccaccacctccggccgcgtcaccatgt 61

                                                                       
Query: 250 ccgccgagtggttccccggccagccccgccccgcccatctggacggctcctcgcc-aggg 308
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 62  ccgccgagtggttccccggccagccccgccccgcccatctggccggctcctcgccaaggg 121

                                                                       
Query: 309 gacttcgggttcgaccccctgggcctcgccaccgtgccggagaacttcgagcggttcaag 368
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gacttcgggttcga-cccctgggcctcgccaccgtgccggagaacttcgagcggttcaag 180

                                                            
Query: 369 gagtccgagatctaccactgccgctgggccatgctctgcgtgccagggg 417
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gagtccgagatctaccactgccgctgggccatgctctgcgtgccagggg 229
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>gb|AY106149.1| Zea mays PCO102434 mRNA sequence
          Length = 1081

 Score =  351 bits (177), Expect = 1e-93
 Identities = 271/300 (90%), Gaps = 3/300 (1%)
 Strand = Plus / Plus

                                                                       
Query: 104 agcagcaatggctatggcgtcgtcaagcgggctcaggagctgcagcgccgtgggcgtgcc 163
           |||||||||||  ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 58  agcagcaatggtgatggcgtcgtcgagcgggctgaggagctgcagcgccgtgggcgtgcc 117

                                                                       
Query: 164 gagcctgctggcgccttcgtcccggtccggccgctccggactgccgttctgcgcctacgc 223
            |||||||||||||| ||||||||||||||||||  | | | ||||||||||||| ||||
Sbjct: 118 cagcctgctggcgccgtcgtcccggtccggccgc--ctggc-gccgttctgcgccaacgc 174

                                                                       
Query: 224 caccacctccggccgcgtcaccatgtccgccgagtggttccccggccagccccgccccgc 283
           ||||||||| |||||||||||||||||||| |||||| | ||||||||||| ||||| ||
Sbjct: 175 caccacctctggccgcgtcaccatgtccgcggagtggatgcccggccagccacgccctgc 234

                                                                       
Query: 284 ccatctggacggctcctcgccaggggacttcgggttcgaccccctgggcctcgccaccgt 343
           ||| || ||||||||||| || ||||||||||| ||||| || ||||||||||| |||||
Sbjct: 235 ccacctcgacggctcctctcccggggacttcggcttcgatccgctgggcctcgcgaccgt 294

                                                                       
Query: 344 gccggagaacttcgagcggttcaaggagtccgagatctaccactgccgctgggccatgct 403
           |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 295 gccggagaacttcgagcggttcaaggagtcagaggtgtaccactgccgctgggccatgct 354
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>dbj|AK098864.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A03, full
           insert sequence
          Length = 1046

 Score =  272 bits (137), Expect = 8e-70
 Identities = 185/201 (92%)
 Strand = Plus / Plus

                                                                       
Query: 204 ctgccgttctgcgcctacgccaccacctccggccgcgtcaccatgtccgccgagtggttc 263
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | 
Sbjct: 164 ctgccggtctgcgcctacgccaccacctccgggcgcgtcaccatgtccgccgagtggatg 223

                                                                       
Query: 264 cccggccagccccgccccgcccatctggacggctcctcgccaggggacttcgggttcgac 323
           || |||||||| ||||||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 224 ccgggccagccacgccccgcccacctcgacggctcctctcccggtgacttcgggttcgac 283

                                                                       
Query: 324 cccctgggcctcgccaccgtgccggagaacttcgagcggttcaaggagtccgagatctac 383
           || ||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct: 284 ccgctgggcctcgccaccgtgccggagaacttcgagcggttcaaggagtcggaggtgtac 343

                                
Query: 384 cactgccgctgggccatgctc 404
           |||||||| ||||||||||||
Sbjct: 344 cactgccggtgggccatgctc 364



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                   
Query: 129 agcgggctcaggagctgcagcgccgtgggcgtgccgagcctgctggcgccttcgtc 184
           |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 95  agcgggctgaggagctgcagcgcggtgggcgtgccgagcctgctggcgccgtcgtc 150
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>dbj|AK060904.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-E07, full
           insert sequence
          Length = 1051

 Score =  272 bits (137), Expect = 8e-70
 Identities = 185/201 (92%)
 Strand = Plus / Plus

                                                                       
Query: 204 ctgccgttctgcgcctacgccaccacctccggccgcgtcaccatgtccgccgagtggttc 263
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | 
Sbjct: 169 ctgccggtctgcgcctacgccaccacctccgggcgcgtcaccatgtccgccgagtggatg 228

                                                                       
Query: 264 cccggccagccccgccccgcccatctggacggctcctcgccaggggacttcgggttcgac 323
           || |||||||| ||||||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 229 ccgggccagccacgccccgcccacctcgacggctcctctcccggtgacttcgggttcgac 288

                                                                       
Query: 324 cccctgggcctcgccaccgtgccggagaacttcgagcggttcaaggagtccgagatctac 383
           || ||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct: 289 ccgctgggcctcgccaccgtgccggagaacttcgagcggttcaaggagtcggaggtgtac 348

                                
Query: 384 cactgccgctgggccatgctc 404
           |||||||| ||||||||||||
Sbjct: 349 cactgccggtgggccatgctc 369



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                   
Query: 129 agcgggctcaggagctgcagcgccgtgggcgtgccgagcctgctggcgccttcgtc 184
           |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 100 agcgggctgaggagctgcagcgcggtgggcgtgccgagcctgctggcgccgtcgtc 155
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>dbj|AK060800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F04, full
           insert sequence
          Length = 1958

 Score =  272 bits (137), Expect = 8e-70
 Identities = 185/201 (92%)
 Strand = Plus / Plus

                                                                       
Query: 204 ctgccgttctgcgcctacgccaccacctccggccgcgtcaccatgtccgccgagtggttc 263
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | 
Sbjct: 166 ctgccggtctgcgcctacgccaccacctccgggcgcgtcaccatgtccgccgagtggatg 225

                                                                       
Query: 264 cccggccagccccgccccgcccatctggacggctcctcgccaggggacttcgggttcgac 323
           || |||||||| ||||||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 226 ccgggccagccacgccccgcccacctcgacggctcctctcccggtgacttcgggttcgac 285

                                                                       
Query: 324 cccctgggcctcgccaccgtgccggagaacttcgagcggttcaaggagtccgagatctac 383
           || ||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct: 286 ccgctgggcctcgccaccgtgccggagaacttcgagcggttcaaggagtcggaggtgtac 345

                                
Query: 384 cactgccgctgggccatgctc 404
           |||||||| ||||||||||||
Sbjct: 346 cactgccggtgggccatgctc 366



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                   
Query: 129 agcgggctcaggagctgcagcgccgtgggcgtgccgagcctgctggcgccttcgtc 184
           |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 97  agcgggctgaggagctgcagcgcggtgggcgtgccgagcctgctggcgccgtcgtc 152
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>gb|AF094776.1|AF094776 Oryza sativa chlorophyll a/b-binding protein precursor (Cab26)
           mRNA, nuclear gene encoding chloroplast protein,
           complete cds
          Length = 1050

 Score =  264 bits (133), Expect = 2e-67
 Identities = 184/201 (91%)
 Strand = Plus / Plus

                                                                       
Query: 204 ctgccgttctgcgcctacgccaccacctccggccgcgtcaccatgtccgccgagtggttc 263
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | 
Sbjct: 149 ctgccggtctgcgcctacgccaccacctccgggcgcgtcaccatgtccgccgagtggatg 208

                                                                       
Query: 264 cccggccagccccgccccgcccatctggacggctcctcgccaggggacttcgggttcgac 323
           || |||||||| ||||||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 209 ccgggccagccacgccccgcccacctcgacggctcctctcccggtgacttcgggttcgac 268

                                                                       
Query: 324 cccctgggcctcgccaccgtgccggagaacttcgagcggttcaaggagtccgagatctac 383
           || |||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct: 269 ccgctgggccttgccaccgtgccggagaacttcgagcggttcaaggagtcggaggtgtac 328

                                
Query: 384 cactgccgctgggccatgctc 404
           |||||||| ||||||||||||
Sbjct: 329 cactgccggtgggccatgctc 349



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                   
Query: 129 agcgggctcaggagctgcagcgccgtgggcgtgccgagcctgctggcgccttcgtc 184
           |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 80  agcgggctgaggagctgcagcgcggtgggcgtgccgagcctgctggcgccgtcgtc 135
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  151 bits (76), Expect = 2e-33
 Identities = 91/96 (94%)
 Strand = Plus / Plus

                                                                            
Query: 309      gacttcgggttcgaccccctgggcctcgccaccgtgccggagaacttcgagcggttcaag 368
                ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12295875 gacttcgggttcgacccgctgggcctcgccaccgtgccggagaacttcgagcggttcaag 12295934

                                                    
Query: 369      gagtccgagatctaccactgccgctgggccatgctc 404
                ||||| ||| | ||||||||||| ||||||||||||
Sbjct: 12295935 gagtcggaggtgtaccactgccggtgggccatgctc 12295970



 Score =  131 bits (66), Expect = 2e-27
 Identities = 90/98 (91%)
 Strand = Plus / Plus

                                                                            
Query: 204      ctgccgttctgcgcctacgccaccacctccggccgcgtcaccatgtccgccgagtggttc 263
                |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | 
Sbjct: 12295670 ctgccggtctgcgcctacgccaccacctccgggcgcgtcaccatgtccgccgagtggatg 12295729

                                                      
Query: 264      cccggccagccccgccccgcccatctggacggctcctc 301
                || |||||||| ||||||||||| || |||||||||||
Sbjct: 12295730 ccgggccagccacgccccgcccacctcgacggctcctc 12295767



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                        
Query: 129      agcgggctcaggagctgcagcgccgtgggcgtgccgagcctgctggcgccttcgtc 184
                |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 12295601 agcgggctgaggagctgcagcgcggtgggcgtgccgagcctgctggcgccgtcgtc 12295656
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>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0578B12
          Length = 151192

 Score =  151 bits (76), Expect = 2e-33
 Identities = 91/96 (94%)
 Strand = Plus / Plus

                                                                         
Query: 309   gacttcgggttcgaccccctgggcctcgccaccgtgccggagaacttcgagcggttcaag 368
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12335 gacttcgggttcgacccgctgggcctcgccaccgtgccggagaacttcgagcggttcaag 12394

                                                 
Query: 369   gagtccgagatctaccactgccgctgggccatgctc 404
             ||||| ||| | ||||||||||| ||||||||||||
Sbjct: 12395 gagtcggaggtgtaccactgccggtgggccatgctc 12430



 Score =  131 bits (66), Expect = 2e-27
 Identities = 90/98 (91%)
 Strand = Plus / Plus

                                                                         
Query: 204   ctgccgttctgcgcctacgccaccacctccggccgcgtcaccatgtccgccgagtggttc 263
             |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | 
Sbjct: 12130 ctgccggtctgcgcctacgccaccacctccgggcgcgtcaccatgtccgccgagtggatg 12189

                                                   
Query: 264   cccggccagccccgccccgcccatctggacggctcctc 301
             || |||||||| ||||||||||| || |||||||||||
Sbjct: 12190 ccgggccagccacgccccgcccacctcgacggctcctc 12227



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                     
Query: 129   agcgggctcaggagctgcagcgccgtgggcgtgccgagcctgctggcgccttcgtc 184
             |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 12061 agcgggctgaggagctgcagcgcggtgggcgtgccgagcctgctggcgccgtcgtc 12116
to top
>gb|AY104104.1| Zea mays PCO079073 mRNA sequence
          Length = 867

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 303 ccaggggacttcgggttcgaccccctgggcctcg 336
           ||||| |||||||| |||||||||||||||||||
Sbjct: 313 ccaggtgacttcggcttcgaccccctgggcctcg 346
to top
>gb|AY347803.1| Malus x domestica clone 8-2 chlorophyll a/b-binding protein type I
           mRNA, partial cds; nuclear gene for chloroplast product
          Length = 462

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 244 ccatgtccgccgagtggttccccggccagccccgccc 280
           ||||||||||||||||| | |||||| ||||||||||
Sbjct: 158 ccatgtccgccgagtggatgcccggcgagccccgccc 194



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 342 gtgccggagaacttcgagcggttcaaggagtccgag 377
           ||||| |||||||| ||| |||||||||||||||||
Sbjct: 256 gtgccagagaacttagagaggttcaaggagtccgag 291
to top
>dbj|AB122115.1| Chlamydomonas reinhardtii LhcI-2 gene for light-harvesting
            chlorophyll-a/b protein of photosystem I (Type III),
            complete cds
          Length = 2389

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 308  ggacttcgggttcgaccccctgggcct 334
            ||||||||| |||||||||||||||||
Sbjct: 1055 ggacttcggcttcgaccccctgggcct 1081
to top
>dbj|AB122118.1| Chlamydomonas reinhardtii LhcI-5 gene for light-harvesting
           chlorophyll-a/b protein of photosystem I, complete cds
          Length = 1886

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 309 gacttcgggttcgaccccctgggcct 334
           |||||||| |||||||||||||||||
Sbjct: 402 gacttcggcttcgaccccctgggcct 427
to top
>emb|AL117328.5|HSA494O16 Human DNA sequence from clone RP11-494O16 on chromosome 22, complete
             sequence
          Length = 50502

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 263   ccccggccagccccgccccgc 283
             |||||||||||||||||||||
Sbjct: 10640 ccccggccagccccgccccgc 10660
to top
>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 388   gccgctgggccatgctctgcgtgcc 412
             ||||||||||||||||| |||||||
Sbjct: 18354 gccgctgggccatgctcggcgtgcc 18330
to top
>ref|XM_631624.1| Dictyostelium discoideum AX4 hypothetical protein (DDB0187910),
            partial mRNA
          Length = 2787

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 48   tgttcttcttcctgttgttgt 68
            |||||||||||||||||||||
Sbjct: 2585 tgttcttcttcctgttgttgt 2565
to top
>gb|AC164112.2| Mus musculus BAC clone RP23-266E12 from chromosome 16, complete
             sequence
          Length = 171693

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 48    tgttcttcttcctgttgttgt 68
             |||||||||||||||||||||
Sbjct: 44932 tgttcttcttcctgttgttgt 44912
to top
>gb|AC154201.2| Mus musculus BAC clone RP24-83I8 from chromosome 16, complete sequence
          Length = 172923

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    tgttcttcttcctgttgttgt 68
             |||||||||||||||||||||
Sbjct: 12791 tgttcttcttcctgttgttgt 12811
to top
>gb|AF165214.1|AF165214 Bacteriophage D3, complete genome
          Length = 56425

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 219   tacgccaccacctccggccgc 239
             |||||||||||||||||||||
Sbjct: 33095 tacgccaccacctccggccgc 33115
to top
>emb|Y00379.1|ZMLHCP Maize mRNA for light-harvesting chlorophyll a/b binding protein
           LHCP
          Length = 967

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 383 ccactgccgctgggccatgct 403
           |||||||||||||||||||||
Sbjct: 364 ccactgccgctgggccatgct 384
to top
>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14
          Length = 1279711

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 49     gttcttcttcctgttgttgtc 69
              |||||||||||||||||||||
Sbjct: 611006 gttcttcttcctgttgttgtc 610986
to top
>dbj|AB019440.1| Homo sapiens DNA for immunoglobulin heavy-chain variable region,
             complete sequence, 4 of 5
          Length = 200000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    gttcttcttcctgttgttgtc 69
             |||||||||||||||||||||
Sbjct: 11006 gttcttcttcctgttgttgtc 10986
to top
>gb|AC149531.2| Xenopus tropicalis clone ISB-331C21, complete sequence
          Length = 98801

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   agcgggctcaggagctgcag 148
             ||||||||||||||||||||
Sbjct: 71384 agcgggctcaggagctgcag 71365
to top
>gb|AC101277.16| Mus musculus chromosome 1, clone RP23-101P2, complete sequence
          Length = 207021

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 262    tccccggccagccccgccccgccc 285
              |||||| |||||||||||||||||
Sbjct: 161740 tccccgcccagccccgccccgccc 161717
to top
>gb|AC160526.13| Mus musculus chromosome 8, clone RP24-191C23, complete sequence
          Length = 174746

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   ccagccccgccccgcccatc 288
             ||||||||||||||||||||
Sbjct: 25247 ccagccccgccccgcccatc 25266
to top
>ref|XM_507384.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1062

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 258 gacttcggcttcgaccccctgggtctcg 285
to top
>ref|XM_507383.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1059

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 259 gacttcggcttcgaccccctgggtctcg 286
to top
>ref|XM_507382.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1058

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 261 gacttcggcttcgaccccctgggtctcg 288
to top
>ref|XM_478841.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 264 gacttcggcttcgaccccctgggtctcg 291
to top
>ref|XM_507381.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1061

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 264 gacttcggcttcgaccccctgggtctcg 291
to top
>ref|XM_507380.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1065

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 265 gacttcggcttcgaccccctgggtctcg 292
to top
>ref|XM_507379.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1069

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 265 gacttcggcttcgaccccctgggtctcg 292
to top
>ref|XM_506426.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1068

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 268 gacttcggcttcgaccccctgggtctcg 295
to top
>gb|AF154570.2| Mus musculus fibroblast growth factor receptor 1 (Fgfr1) gene, exons
            6 to 9 and partial cds, alternatively spliced
          Length = 5993

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  ccagccccgccccgcccatc 288
            ||||||||||||||||||||
Sbjct: 5458 ccagccccgccccgcccatc 5439
to top
>gb|AC115341.6| Rattus norvegicus 3 BAC CH230-248O1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 237425

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     cagcaaggagcagccagcat 97
              ||||||||||||||||||||
Sbjct: 144918 cagcaaggagcagccagcat 144899
to top
>gb|BC096514.1| Xenopus tropicalis c6.1a protein, mRNA (cDNA clone MGC:108101
           IMAGE:7004768), complete cds
          Length = 2375

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 agcgggctcaggagctgcag 148
           ||||||||||||||||||||
Sbjct: 736 agcgggctcaggagctgcag 755
to top
>gb|AC183614.3| Pan troglodytes BAC clone CH251-186N21 from chromosome 15, complete
             sequence
          Length = 136531

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    gttcttcttcctgttgttgt 68
             ||||||||||||||||||||
Sbjct: 82632 gttcttcttcctgttgttgt 82613
to top
>gb|AC142208.3| Homo sapiens chromosome 16 clone XXfos-89260C6, complete sequence
          Length = 37483

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   tccccggccagccccgccccgccc 285
             ||||| ||||||||||||||||||
Sbjct: 23797 tccccagccagccccgccccgccc 23774
to top
>ref|XM_823936.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.1410)
            partial mRNA
          Length = 1455

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  agcgggctcaggagctgcag 148
            ||||||||||||||||||||
Sbjct: 1235 agcgggctcaggagctgcag 1254
to top
>gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, complete sequence
          Length = 194736

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    cagagcgcacgcctgttctt 54
             ||||||||||||||||||||
Sbjct: 16623 cagagcgcacgcctgttctt 16642
to top
>gb|AC037471.12| Homo sapiens chromosome 15, clone RP11-810K23, complete sequence
          Length = 217553

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     gttcttcttcctgttgttgt 68
              ||||||||||||||||||||
Sbjct: 159062 gttcttcttcctgttgttgt 159081
to top
>gb|AY163380.1| Zea mays putative ROP family GTPase ROP6 gene, complete cds
          Length = 2031

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   cacgcctgttcttcttcctg 61
            ||||||||||||||||||||
Sbjct: 1410 cacgcctgttcttcttcctg 1391
to top
>gb|AC127381.4| Homo sapiens BAC clone RP11-1360M22 from UL, complete sequence
          Length = 241627

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    gttcttcttcctgttgttgt 68
             ||||||||||||||||||||
Sbjct: 66713 gttcttcttcctgttgttgt 66694
to top
>gb|AC087386.7| Homo sapiens chromosome 15, clone RP11-173D3, complete sequence
          Length = 155343

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   gttcttcttcctgttgttgt 68
            ||||||||||||||||||||
Sbjct: 2442 gttcttcttcctgttgttgt 2461
to top
>emb|AJ245628.1|HSA245628 Homo sapiens EVN gene for pre-pro-enovin
          Length = 1188

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 262 tccccggccagccccgccccgccc 285
           |||| |||||||||||||||||||
Sbjct: 645 tcccgggccagccccgccccgccc 622
to top
>emb|AL357079.24| Human DNA sequence from clone RP11-7O11 on chromosome 1, complete
             sequence
          Length = 106769

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   tccccggccagccccgccccgccc 285
             |||| |||||||||||||||||||
Sbjct: 56334 tcccgggccagccccgccccgccc 56311
to top
>gb|AC069113.9| Homo sapiens chromosome 8, clone RP11-597M17, complete sequence
          Length = 197616

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     ttcttcttcctgttgttgtc 69
              ||||||||||||||||||||
Sbjct: 152853 ttcttcttcctgttgttgtc 152834
to top
>gb|AF276759.4| Homo sapiens chromosome 8 clone RP11-420F14 map p21-p11, complete
              sequence
          Length = 213611

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     ttcttcttcctgttgttgtc 69
              ||||||||||||||||||||
Sbjct: 102169 ttcttcttcctgttgttgtc 102150
to top
>ref|NM_001016457.2| Xenopus tropicalis c6.1a protein (c6.1a), mRNA
          Length = 2382

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 agcgggctcaggagctgcag 148
           ||||||||||||||||||||
Sbjct: 744 agcgggctcaggagctgcag 763
to top
>emb|AJ278665.1|ZMA278665 Zea mays mRNA for putative Rop family GTPase, ROP6 (rop6 gene)
          Length = 945

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 42  cacgcctgttcttcttcctg 61
           ||||||||||||||||||||
Sbjct: 622 cacgcctgttcttcttcctg 603
to top
>gb|AC021585.7| Homo sapiens chromosome , clone RP11-96F3, complete sequence
          Length = 187670

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    gttcttcttcctgttgttgt 68
             ||||||||||||||||||||
Sbjct: 63046 gttcttcttcctgttgttgt 63027
to top
>gb|AC149383.2| Phakopsora pachyrhizi clone JGIAFNA-5A9, complete sequence
          Length = 39440

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   cggccagccccgccccgccc 285
             ||||||||||||||||||||
Sbjct: 30471 cggccagccccgccccgccc 30490
to top
>gb|AC149146.3| Xenopus tropicalis clone ISB-156G23, complete sequence
          Length = 96721

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   agcgggctcaggagctgcag 148
             ||||||||||||||||||||
Sbjct: 42241 agcgggctcaggagctgcag 42260
to top
>gb|AY125979.1| Zea mays hexokinase mRNA, complete cds
          Length = 1893

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 145 gcagcgccgtgggcgtgccgagcctgct 172
           ||||||||||||||||| |||| |||||
Sbjct: 190 gcagcgccgtgggcgtggcgaggctgct 163
to top
>emb|Z17226.1|PSLHCA411 Pinus sylvestris Lhca4*1-1 gene encoding Lhca4 protein (type 4
           protein of light-harvesting complex of photosystem I)
          Length = 1013

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 314 cgggttcgaccccctgggcctcgc 337
           ||||||||| ||||||||||||||
Sbjct: 223 cgggttcgatcccctgggcctcgc 246
to top
>gb|AF279892.1| Rattus norvegicus 7-dehydrocholesterol reductase (Dhcr7) gene,
           complete cds
          Length = 17734

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 ggccagccccgccccgccca 286
           ||||||||||||||||||||
Sbjct: 898 ggccagccccgccccgccca 879
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 325     ccctgggcctcgccaccgtg 344
               ||||||||||||||||||||
Sbjct: 4683828 ccctgggcctcgccaccgtg 4683847
to top
>gb|AF349018.1|F349018S01 Homo sapiens topoisomerase I gene, exon 1; nuclear gene for
           mitochondrial product
          Length = 1963

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 cggccagccccgccccgccc 285
           ||||||||||||||||||||
Sbjct: 696 cggccagccccgccccgccc 677
to top
>gb|AC104835.3| Homo sapiens chromosome 3 clone RP11-27J5, complete sequence
          Length = 192570

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     ctgttcttcttcctgttgtt 66
              ||||||||||||||||||||
Sbjct: 146295 ctgttcttcttcctgttgtt 146314
to top
>gb|AC015917.30| Homo sapiens chromosome 17, clone CTD-2350C19, complete sequence
          Length = 123794

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 262  tccccggccagccccgccccgccc 285
            |||||| |||||||||||||||||
Sbjct: 4994 tccccgcccagccccgccccgccc 4971
to top
>gb|AC005038.5|AC005038 Homo sapiens BAC clone RP11-486I22 from 1, complete sequence
          Length = 190744

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 262    tccccggccagccccgccccgccc 285
              |||| |||||||||||||||||||
Sbjct: 154341 tcccgggccagccccgccccgccc 154364
to top
>gb|AC140838.3| Homo sapiens chromosome 16 clone XXfos-84069G6, complete sequence
          Length = 40546

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   tccccggccagccccgccccgccc 285
             ||||| ||||||||||||||||||
Sbjct: 33970 tccccagccagccccgccccgccc 33947
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 309      gacttcgggttcgaccccctgggcctcg 336
                |||||||| |||||||||||||| ||||
Sbjct: 23304570 gacttcggcttcgaccccctgggtctcg 23304597
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>gb|AC140540.3| Homo sapiens chromosome 16 clone XXfos-88730H2, complete sequence
          Length = 38342

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   tccccggccagccccgccccgccc 285
             ||||| ||||||||||||||||||
Sbjct: 32688 tccccagccagccccgccccgccc 32665
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>gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, complete sequence
          Length = 179941

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  cggccagccccgccccgccc 285
            ||||||||||||||||||||
Sbjct: 4947 cggccagccccgccccgccc 4966



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  cggccagccccgccccgccc 285
            ||||||||||||||||||||
Sbjct: 4923 cggccagccccgccccgccc 4942



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  cggccagccccgccccgccc 285
            ||||||||||||||||||||
Sbjct: 4899 cggccagccccgccccgccc 4918
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>gb|AC087793.17| Homo sapiens chromosome 8, clone RP5-1118A7, complete sequence
          Length = 124060

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   cggccagccccgccccgccc 285
             ||||||||||||||||||||
Sbjct: 84248 cggccagccccgccccgccc 84267
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 183     tcccggtccggccgctccgg 202
               ||||||||||||||||||||
Sbjct: 4732354 tcccggtccggccgctccgg 4732335
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>gb|AC135263.5| Homo sapiens chromosome 15, clone RP13-381O4, complete sequence
          Length = 36235

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    gttcttcttcctgttgttgt 68
             ||||||||||||||||||||
Sbjct: 28936 gttcttcttcctgttgttgt 28917
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>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1065_B06
          Length = 113170

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 309   gacttcgggttcgaccccctgggcctcg 336
             |||||||| |||||||||||||| ||||
Sbjct: 59828 gacttcggcttcgaccccctgggtctcg 59855
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>gb|DQ163915.1| Bacteriophage PA11, complete genome
          Length = 49639

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 220  acgccaccacctccggccgc 239
            ||||||||||||||||||||
Sbjct: 6603 acgccaccacctccggccgc 6584
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>dbj|AK119176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-F08, full
           insert sequence
          Length = 1088

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 279 gacttcggcttcgaccccctgggtctcg 306
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>emb|X64198.1|NTLHC1R N.tabacum LHC-I mRNA for photosystem I light-harvesting chlorophyll
           a/b-binding protein
          Length = 845

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 245 catgtccgccgagtggttccccggccagccccgccc 280
           |||||| ||||||||| | || ||||||||||||||
Sbjct: 164 catgtctgccgagtggatgccgggccagccccgccc 199
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>emb|Z16409.1|PSLHCA412 P.sylvestris Lhca4*1-2 mRNA encoding Lhca4 protein (type 4 protein
           of light-harvesting complex of photosystem I) (partial)
          Length = 968

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 314 cgggttcgaccccctgggcctcgc 337
           ||||||||| ||||||||||||||
Sbjct: 200 cgggttcgatcccctgggcctcgc 223
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>emb|X71965.1|CSCAB2MR C.stellata cab2 mRNA for light harvesting complex I chlorophyll
           binding protein
          Length = 1141

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 cactgccgctgggccatgct 403
           ||||||||||||||||||||
Sbjct: 268 cactgccgctgggccatgct 287
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>dbj|AK104651.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B06, full
           insert sequence
          Length = 1069

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 265 gacttcggcttcgaccccctgggtctcg 292
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>dbj|AK104608.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C01, full
           insert sequence
          Length = 1065

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 265 gacttcggcttcgaccccctgggtctcg 292
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>dbj|AK104283.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-H09, full
           insert sequence
          Length = 1080

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 295 gacttcggcttcgaccccctgggtctcg 322
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>dbj|AK104177.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D02, full
           insert sequence
          Length = 1058

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 261 gacttcggcttcgaccccctgggtctcg 288
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>dbj|AK104127.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E10, full
           insert sequence
          Length = 1061

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 264 gacttcggcttcgaccccctgggtctcg 291
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>dbj|AK104016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-G05, full
           insert sequence
          Length = 1062

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 258 gacttcggcttcgaccccctgggtctcg 285
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>dbj|AK103966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H03, full
           insert sequence
          Length = 1059

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 259 gacttcggcttcgaccccctgggtctcg 286
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>dbj|AK070051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040A06, full
           insert sequence
          Length = 1646

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 353 gacttcggcttcgaccccctgggtctcg 380
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>dbj|AK060987.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C01, full
           insert sequence
          Length = 1068

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 268 gacttcggcttcgaccccctgggtctcg 295
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>gb|AY106111.1| Zea mays PCO074668 mRNA sequence
          Length = 1962

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 145 gcagcgccgtgggcgtgccgagcctgct 172
           ||||||||||||||||| |||| |||||
Sbjct: 293 gcagcgccgtgggcgtggcgaggctgct 266
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>emb|CR760965.2| Xenopus tropicalis finished cDNA, clone TEgg028n11
          Length = 2382

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 agcgggctcaggagctgcag 148
           ||||||||||||||||||||
Sbjct: 744 agcgggctcaggagctgcag 763
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>gb|AF115765.1|AF115765 Homo sapiens Artemin gene, alternative forms, complete cds
          Length = 1652

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 262 tccccggccagccccgccccgccc 285
           |||| |||||||||||||||||||
Sbjct: 915 tcccgggccagccccgccccgccc 892
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>gb|AC005726.1|AC005726 Homo sapiens chromosome 17, clone  hRPK.192_H_23, complete sequence
          Length = 185215

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 262    tccccggccagccccgccccgccc 285
              |||||| |||||||||||||||||
Sbjct: 149804 tccccgcccagccccgccccgccc 149781
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>gb|AF010321.1|AF010321 Oryza sativa photosystem I antenna protein (Lhca) mRNA, complete
           cds
          Length = 1066

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 309 gacttcgggttcgaccccctgggcctcg 336
           |||||||| |||||||||||||| ||||
Sbjct: 235 gacttcggcttcgaccccctgggtctcg 262
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>emb|Y11740.1|HSY11740 H.sapiens whn gene, exon 1a and 1b
          Length = 13380

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 262  tccccggccagccccgccccgccc 285
            |||||| |||||||||||||||||
Sbjct: 6999 tccccgcccagccccgccccgccc 7022


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,820,455
Number of Sequences: 3902068
Number of extensions: 2820455
Number of successful extensions: 59638
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59184
Number of HSP's gapped (non-prelim): 450
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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