ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast69g02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550313.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1947 Score = 182 bits (92), Expect = 5e-43 Identities = 137/152 (90%) Strand = Plus / Plus Query: 171 acgcagaagctgcaggagttcctggcccgcctcgacgacgagcggctcaagatcgacgcc 230 ||||||||||| ||||||||| || | || ||||| || ||| ||||||||||||||||| Sbjct: 75 acgcagaagcttcaggagttcttgtcacgtctcgaggaagagaggctcaagatcgacgcc 134 Query: 231 ttcaagcgcgagctcccgctctgcatgcagctgctcaaccaagctatggaggcgtacagg 290 |||||||| |||||||| |||||||||||||| ||||| || |||||||||||||||||| Sbjct: 135 ttcaagcgtgagctccctctctgcatgcagcttctcaatcatgctatggaggcgtacagg 194 Query: 291 cagcagctggaagcgtgccagatggggagcca 322 ||||||||||| |||| ||||||||||||||| Sbjct: 195 cagcagctggaggcgtaccagatggggagcca 226 Score = 63.9 bits (32), Expect = 3e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 330 gcggcggcgagggcgccgctggtgctcgagga 361 |||||||||||||||||||||||||||||||| Sbjct: 246 gcggcggcgagggcgccgctggtgctcgagga 277
>dbj|AK109808.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-G07, full insert sequence Length = 1947 Score = 182 bits (92), Expect = 5e-43 Identities = 137/152 (90%) Strand = Plus / Plus Query: 171 acgcagaagctgcaggagttcctggcccgcctcgacgacgagcggctcaagatcgacgcc 230 ||||||||||| ||||||||| || | || ||||| || ||| ||||||||||||||||| Sbjct: 75 acgcagaagcttcaggagttcttgtcacgtctcgaggaagagaggctcaagatcgacgcc 134 Query: 231 ttcaagcgcgagctcccgctctgcatgcagctgctcaaccaagctatggaggcgtacagg 290 |||||||| |||||||| |||||||||||||| ||||| || |||||||||||||||||| Sbjct: 135 ttcaagcgtgagctccctctctgcatgcagcttctcaatcatgctatggaggcgtacagg 194 Query: 291 cagcagctggaagcgtgccagatggggagcca 322 ||||||||||| |||| ||||||||||||||| Sbjct: 195 cagcagctggaggcgtaccagatggggagcca 226 Score = 63.9 bits (32), Expect = 3e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 330 gcggcggcgagggcgccgctggtgctcgagga 361 |||||||||||||||||||||||||||||||| Sbjct: 246 gcggcggcgagggcgccgctggtgctcgagga 277
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 107 bits (54), Expect = 3e-20 Identities = 87/98 (88%) Strand = Plus / Plus Query: 171 acgcagaagctgcaggagttcctggcccgcctcgacgacgagcggctcaagatcgacgcc 230 ||||||||||| ||||||||| || | || ||||| || ||| ||||||||||||||||| Sbjct: 3952117 acgcagaagcttcaggagttcttgtcacgtctcgaggaagagaggctcaagatcgacgcc 3952176 Query: 231 ttcaagcgcgagctcccgctctgcatgcagctgctcaa 268 |||||||| |||||||| |||||||||||||| ||||| Sbjct: 3952177 ttcaagcgtgagctccctctctgcatgcagcttctcaa 3952214 Score = 85.7 bits (43), Expect = 9e-14 Identities = 49/51 (96%) Strand = Plus / Plus Query: 272 agctatggaggcgtacaggcagcagctggaagcgtgccagatggggagcca 322 |||||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct: 3952293 agctatggaggcgtacaggcagcagctggaggcgtaccagatggggagcca 3952343 Score = 63.9 bits (32), Expect = 3e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 330 gcggcggcgagggcgccgctggtgctcgagga 361 |||||||||||||||||||||||||||||||| Sbjct: 3952363 gcggcggcgagggcgccgctggtgctcgagga 3952394
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 107 bits (54), Expect = 3e-20 Identities = 87/98 (88%) Strand = Plus / Plus Query: 171 acgcagaagctgcaggagttcctggcccgcctcgacgacgagcggctcaagatcgacgcc 230 ||||||||||| ||||||||| || | || ||||| || ||| ||||||||||||||||| Sbjct: 74021 acgcagaagcttcaggagttcttgtcacgtctcgaggaagagaggctcaagatcgacgcc 74080 Query: 231 ttcaagcgcgagctcccgctctgcatgcagctgctcaa 268 |||||||| |||||||| |||||||||||||| ||||| Sbjct: 74081 ttcaagcgtgagctccctctctgcatgcagcttctcaa 74118 Score = 85.7 bits (43), Expect = 9e-14 Identities = 49/51 (96%) Strand = Plus / Plus Query: 272 agctatggaggcgtacaggcagcagctggaagcgtgccagatggggagcca 322 |||||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct: 74197 agctatggaggcgtacaggcagcagctggaggcgtaccagatggggagcca 74247 Score = 63.9 bits (32), Expect = 3e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 330 gcggcggcgagggcgccgctggtgctcgagga 361 |||||||||||||||||||||||||||||||| Sbjct: 74267 gcggcggcgagggcgccgctggtgctcgagga 74298
>ref|NM_126400.2| Arabidopsis thaliana DNA binding / transcription factor AT2G03500 mRNA, complete cds Length = 1666 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Plus Query: 216 ctcaagatcgacgccttcaagcgcgagctcccgctctgcatgca 259 ||||||||||| |||||||| |||||||| || || |||||||| Sbjct: 358 ctcaagatcgatgccttcaaacgcgagcttcccctttgcatgca 401
>gb|AY133630.1| Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds Length = 1299 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Plus Query: 216 ctcaagatcgacgccttcaagcgcgagctcccgctctgcatgca 259 ||||||||||| |||||||| |||||||| || || |||||||| Sbjct: 142 ctcaagatcgatgccttcaaacgcgagcttcccctttgcatgca 185
>gb|AC006284.4| Arabidopsis thaliana chromosome 2 clone T4M8 map CIC11A04, complete sequence Length = 89137 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Minus Query: 216 ctcaagatcgacgccttcaagcgcgagctcccgctctgcatgca 259 ||||||||||| |||||||| |||||||| || || |||||||| Sbjct: 19682 ctcaagatcgatgccttcaaacgcgagcttcccctttgcatgca 19639
>gb|AY060559.1| Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds Length = 1636 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Plus Query: 216 ctcaagatcgacgccttcaagcgcgagctcccgctctgcatgca 259 ||||||||||| |||||||| |||||||| || || |||||||| Sbjct: 329 ctcaagatcgatgccttcaaacgcgagcttcccctttgcatgca 372
>dbj|AK221662.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-70-E23 Length = 1647 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Plus Query: 216 ctcaagatcgacgccttcaagcgcgagctcccgctctgcatgca 259 ||||||||||| |||||||| |||||||| || || |||||||| Sbjct: 329 ctcaagatcgatgccttcaaacgcgagcttcccctttgcatgca 372
>emb|BX819077.1|CNS0A8Y5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB43ZG06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1285 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Plus Query: 216 ctcaagatcgacgccttcaagcgcgagctcccgctctgcatgca 259 ||||||||||| |||||||| |||||||| || || |||||||| Sbjct: 358 ctcaagatcgatgccttcaaacgcgagcttcccctttgcatgca 401
>ref|XM_475300.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1617 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 330 gcggcggcgagggcgccgctggtgct 355 ||||||||||||||||||| |||||| Sbjct: 16 gcggcggcgagggcgccgccggtgct 41
>gb|AC119292.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0088F07, complete sequence Length = 139180 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 330 gcggcggcgagggcgccgctggtgct 355 ||||||||||||||||||| |||||| Sbjct: 81892 gcggcggcgagggcgccgccggtgct 81867
>gb|AY613782.1| Aegilops tauschii isolate TA2468 clone 2 HCBT-like putative PR gene, partial cds Length = 6062 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 cgctgcggcggcgagggcgccg 347 |||||||||||||||||||||| Sbjct: 1342 cgctgcggcggcgagggcgccg 1363
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 330 gcggcggcgagggcgccgctggtgct 355 |||||| ||||||||||||||||||| Sbjct: 163927 gcggcgtcgagggcgccgctggtgct 163902
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 330 gcggcggcgagggcgccgctggtgct 355 ||||||||||||||||||| |||||| Sbjct: 21201109 gcggcggcgagggcgccgccggtgct 21201084
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like putative defense response protein, and putative alliin lyase genes, complete cds; and unknown genes Length = 106618 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 cgctgcggcggcgagggcgccg 347 |||||||||||||||||||||| Sbjct: 39708 cgctgcggcggcgagggcgccg 39729
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 196 cccgcctcgacgacgagcggct 217 |||||||||||||||||||||| Sbjct: 2412785 cccgcctcgacgacgagcggct 2412764
>dbj|AP008931.1| Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence Length = 271577 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 gcggcggcgagggcgccgctg 350 ||||||||||||||||||||| Sbjct: 152626 gcggcggcgagggcgccgctg 152606
>gb|AF436479.1| Dipseudopsis varians 18S small subunit ribosomal RNA gene, partial sequence Length = 541 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 ggcccgcctcgacgacgagcg 214 ||||||||||||||||||||| Sbjct: 167 ggcccgcctcgacgacgagcg 147
>gb|AE005100.1| Halobacterium sp. NRC-1 section 131 of 170 of the complete genome Length = 10282 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 330 gcggcggcgagggcgccgctggtgc 354 |||||||||||| |||||||||||| Sbjct: 7946 gcggcggcgaggacgccgctggtgc 7970
>ref|XM_469887.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1047 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 ttcaagcgcgagctcccgctctgc 254 |||| ||||||||||||||||||| Sbjct: 169 ttcaggcgcgagctcccgctctgc 192
>gb|AY545588.1| Crithidia fasciculata elongation factor 1B gamma 2 gene, complete cds Length = 1263 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tcgacgccttcaagcgcgag 242 |||||||||||||||||||| Sbjct: 794 tcgacgccttcaagcgcgag 813
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tggcccgcctcgacgacgag 212 |||||||||||||||||||| Sbjct: 2339979 tggcccgcctcgacgacgag 2339998
>gb|AE008930.1| Agrobacterium tumefaciens str. C58 AT plasmid section 5 of 49 of the complete sequence Length = 10454 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 gctcaagatcgacgccttca 234 |||||||||||||||||||| Sbjct: 2320 gctcaagatcgacgccttca 2339
>gb|AE007877.1| Agrobacterium tumefaciens str. C58 plasmid AT, section 5 of 50 of the complete sequence Length = 10062 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 gctcaagatcgacgccttca 234 |||||||||||||||||||| Sbjct: 2413 gctcaagatcgacgccttca 2432
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 ttcaagcgcgagctcccgctctgc 254 |||| ||||||||||||||||||| Sbjct: 31340294 ttcaggcgcgagctcccgctctgc 31340317
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 ccagcggcggctacccgaag 116 |||||||||||||||||||| Sbjct: 2954522 ccagcggcggctacccgaag 2954503
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 231 ttcaagcgcgagctcccgctctgc 254 |||| ||||||||||||||||||| Sbjct: 155506 ttcaggcgcgagctcccgctctgc 155483
>emb|Z11920.1|OSHSP82A O.sativa gene for heat shock protein 82 HSP82 Length = 5310 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gccatggcgctgcggcggcg 338 |||||||||||||||||||| Sbjct: 931 gccatggcgctgcggcggcg 912
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 175 agaagctgcaggagttcctggcccgcct 202 |||||||||||||| |||||||||||| Sbjct: 258007 agaagctgcaggagcgcctggcccgcct 258034
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 ggagttcctggcccgcctcgacga 208 ||||||||||||| |||||||||| Sbjct: 73277 ggagttcctggccggcctcgacga 73254
>emb|AJ543646.1|GST543646 Geobacillus stearothermophilus smc gene Length = 3564 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 ctcccgctctgcatgcagctgctc 266 ||||||||| |||||||||||||| Sbjct: 1032 ctcccgctcggcatgcagctgctc 1009
>gb|AE012409.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 317 of 460 of the complete genome Length = 9982 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 agctgcaggagttcctggcccgcc 201 |||||||||||||||||| ||||| Sbjct: 8733 agctgcaggagttcctgggccgcc 8756
>gb|AF450326.1| Azospirillum brasilense chemotaxis gene cluster, complete sequence Length = 6720 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gacgccttcaagcgcgagct 244 |||||||||||||||||||| Sbjct: 5017 gacgccttcaagcgcgagct 5036
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 agctgcaggagttcctggcccgcc 201 |||||||||||||||||| ||||| Sbjct: 1402554 agctgcaggagttcctgggccgcc 1402531
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gccatggcgctgcggcggcg 338 |||||||||||||||||||| Sbjct: 24716197 gccatggcgctgcggcggcg 24716216
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 ttcaagcgcgagctcccgctctgc 254 |||| ||||||||||||||||||| Sbjct: 31430810 ttcaggcgcgagctcccgctctgc 31430833
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 tcctggcccgcctcgacgac 209 |||||||||||||||||||| Sbjct: 1107349 tcctggcccgcctcgacgac 1107368
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 ctcccgctctgcatgcagctgctc 266 ||||||||| |||||||||||||| Sbjct: 1213574 ctcccgctcggcatgcagctgctc 1213551
>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1345_D02 Length = 159613 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gccatggcgctgcggcggcg 338 |||||||||||||||||||| Sbjct: 16998 gccatggcgctgcggcggcg 17017
>dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1118_A06 Length = 92836 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gccatggcgctgcggcggcg 338 |||||||||||||||||||| Sbjct: 88501 gccatggcgctgcggcggcg 88520
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ctggcccgcctcgacgacga 211 |||||||||||||||||||| Sbjct: 1779026 ctggcccgcctcgacgacga 1779007
>dbj|AK105625.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C11, full insert sequence Length = 1496 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 ttcaagcgcgagctcccgctctgc 254 |||| ||||||||||||||||||| Sbjct: 309 ttcaggcgcgagctcccgctctgc 332
>gb|AF203033.1|AF203033 Chlamydomonas reinhardtii nitrate reductase (NIT1) gene, complete cds Length = 8981 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 73 ccaacggcaacggcacggcggctgccagcggc 104 ||||||||||||||||||| |||||| |||| Sbjct: 5656 ccaacggcaacggcacggcaactgccaacggc 5687 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,145,803 Number of Sequences: 3902068 Number of extensions: 2145803 Number of successful extensions: 53898 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52812 Number of HSP's gapped (non-prelim): 1086 length of query: 368 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 346 effective length of database: 17,147,199,772 effective search space: 5932931121112 effective search space used: 5932931121112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
