>RECN_STRCO (Q9S220) DNA repair protein recN (Recombination protein N)|
          Length = 572

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 122 DEMGADAAGGTPCRAADLVVRQSATGRVVEGKPEYAVELTNRCR-CAQSRVLLRCYGLSS 298
           D    DA  G   + A+   R  A  R +E       E+T R R  AQ   LLR YGL  
Sbjct: 144 DRYAGDAVAGPLAKYAEAYRRLRAVVRELE-------EITTRARERAQEADLLR-YGLDE 195

Query: 299 VEAVDPR 319
           + AV+PR
Sbjct: 196 IAAVEPR 202

>CIC_HUMAN (Q96RK0) Protein capicua homolog|
          Length = 1608

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 3    PRKPPRPS*LAATASRESSWRAKPSCTSRCYCYSVVPPKATRWEP 137
            P+ PP P+   AT +  S +   PS T+    YS+V PKA R  P
Sbjct: 1135 PKGPPAPA--TATPAPTSPF---PSATAGSMTYSLVAPKAQRPSP 1174

>M6PBP_PONPY (Q5RAV8) Mannose-6-phosphate receptor-binding protein 1|
          Length = 434

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -1

Query: 342 LSVNRPDRRGSTASTLLRP*QRSSTLDCAHRQRLVSST---AYSGFPSTTRPVADCRTTR 172
           +S +  +  GST  T+  P Q+ S +D      L+SST     + + ST       +T  
Sbjct: 1   MSADGAEADGSTQVTVEEPVQQPSVVDRVASMPLISSTCDMVSAAYASTKESYPHVKTVC 60

Query: 171 SAARHGV 151
            AA  GV
Sbjct: 61  DAAEKGV 67

>M6PBP_HUMAN (O60664) Mannose-6-phosphate receptor-binding protein 1 (Cargo|
           selection protein TIP47) (47 kDa mannose 6-phosphate
           receptor-binding protein) (47 kDa MPR-binding protein)
           (Placental protein 17) (PP17)
          Length = 434

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -1

Query: 342 LSVNRPDRRGSTASTLLRP*QRSSTLDCAHRQRLVSST---AYSGFPSTTRPVADCRTTR 172
           +S +  +  GST  T+  P Q+ S +D      L+SST     + + ST       +T  
Sbjct: 1   MSADGAEADGSTQVTVEEPVQQPSVVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVC 60

Query: 171 SAARHGV 151
            AA  GV
Sbjct: 61  DAAEKGV 67

>MTPS_PROST (P00474) Modification methylase PstI (EC 2.1.1.72)|
           (Adenine-specific methyltransferase PstI) (M.PstI)
          Length = 507

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 134 ADAAGGTPCRAADLVVRQSATGRVVE 211
           A+ AGG PC  +DL + Q +TG+VV+
Sbjct: 305 ANKAGGLPCSLSDLGI-QVSTGKVVD 329

>RS2_COREF (Q8FP70) 30S ribosomal protein S2|
          Length = 276

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 346 SALRQPAGSPRVHGLDAAEAVAAEQHPGLRAPAA 245
           +A R+ AG P+     A EA A E+ P   APAA
Sbjct: 235 AAAREAAGEPKSEDAPA-EAAATEEAPATEAPAA 267


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,822,809
Number of Sequences: 219361
Number of extensions: 545350
Number of successful extensions: 1898
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1898
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)