ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast69f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GDIR_ARATH (Q9SFC6) Rho GDP-dissociation inhibitor 1 (Rho GDI-1)... 54 2e-07
2GDIR_MOUSE (Q99PT1) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)... 32 0.89
3GDIR_HUMAN (P52565) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)... 32 0.89
4GDIR_BOVIN (P19803) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)... 32 0.89
5H14_RABIT (P02252) Histone H1.4 (Fragment) 29 5.8

>GDIR_ARATH (Q9SFC6) Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1)|
          Length = 240

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +3

Query: 336 IDLGPILSIKDQLEKDKDDECLRRWKEQXLGSVD 437
           + LGP  +IK+ LEKDKDDE LR+WKEQ LGSVD
Sbjct: 62  LQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVD 95



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>GDIR_MOUSE (Q99PT1) Rho GDP-dissociation inhibitor 1 (Rho GDI 1) (Rho-GDI|
           alpha) (GDI-1)
          Length = 204

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 357 SIKDQLEKDKDDECLRRWKEQXLGSV 434
           SI++  E DKDDE LR++KE  LG V
Sbjct: 34  SIQEIQELDKDDESLRKYKEALLGRV 59



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>GDIR_HUMAN (P52565) Rho GDP-dissociation inhibitor 1 (Rho GDI 1) (Rho-GDI|
           alpha)
          Length = 204

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 357 SIKDQLEKDKDDECLRRWKEQXLGSV 434
           SI++  E DKDDE LR++KE  LG V
Sbjct: 34  SIQEIQELDKDDESLRKYKEALLGRV 59



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>GDIR_BOVIN (P19803) Rho GDP-dissociation inhibitor 1 (Rho GDI 1) (Rho-GDI|
           alpha)
          Length = 204

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 357 SIKDQLEKDKDDECLRRWKEQXLGSV 434
           SI++  E DKDDE LR++KE  LG V
Sbjct: 34  SIQEIQELDKDDESLRKYKEALLGRV 59



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>H14_RABIT (P02252) Histone H1.4 (Fragment)|
          Length = 73

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 128 SQLTHTTAMAAPSSTPQRLAKKRRGQKEGGVAKRR 24
           S+    TA  AP+ +P    KK R +K  G AKR+
Sbjct: 1   SEAPAETAAPAPAKSPATPVKKARKKKSAGAAKRK 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,192,572
Number of Sequences: 219361
Number of extensions: 323534
Number of successful extensions: 1083
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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