>TRMD_XYLFT (Q87F54) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 261

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 2   PAPAPLVYSVPQYPL--RSPARSLARSPQPMAALC 100
           P PAPL+Y  PQ  L  +S AR LA  P+ M  LC
Sbjct: 79  PQPAPLIYLSPQGVLLNQSRARKLAMLPR-MILLC 112

>TRMD_XYLFA (Q9PH37) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 261

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 2   PAPAPLVYSVPQYPL--RSPARSLARSPQPMAALC 100
           P PAPL+Y  PQ  L  +S AR LA  P+ M  LC
Sbjct: 79  PQPAPLIYLSPQGVLLNQSRARKLAMLPR-MILLC 112

>PHC2_MOUSE (Q9QWH1) Polyhomeotic-like protein 2 (mPH2) (Early development|
           regulatory protein 2) (p36)
          Length = 850

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 2   PAPAPLVYSVPQYPLRSPARSLARSPQPMA 91
           P PAP V S PQ    SP+ +L  SP+  A
Sbjct: 356 PRPAPQVQSQPQLASVSPSLALQSSPEDHA 385

>YN8H_YEAST (P53729) Hypothetical 48.1 kDa protein in SEC12-SSK2 intergenic|
           region
          Length = 429

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 314 TEIPPDNRIPATIITGFLGS 373
           T++    RIP +IITG+LGS
Sbjct: 63  TDVHEKKRIPVSIITGYLGS 82


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,510,972
Number of Sequences: 219361
Number of extensions: 235108
Number of successful extensions: 979
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)