ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast69f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472398.1| Oryza sativa (japonica cultivar-group), predic... 84 4e-13
2emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4,... 84 4e-13
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
4dbj|AK102032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
6dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
7dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
8dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
9dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
10dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
11gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 44 0.34
12emb|BX005098.11| Zebrafish DNA sequence from clone DKEY-211F22 i... 42 1.4
13emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 40 5.3
14dbj|AP002086.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, co... 40 5.3
15gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 5.3
16gb|AE004523.1| Pseudomonas aeruginosa PAO1, section 84 of 529 of... 40 5.3
17emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.3
18dbj|AB039932.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, VA... 40 5.3 
>ref|XM_472398.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1035

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 96/114 (84%)
 Strand = Plus / Plus

                                                                       
Query: 222 cggctcgccgggcgggcctccggtcacggcgaccaggacgaagctcagggacggcaggca 281
           |||||| ||||| || |||||||| || | ||| || ||  |||||| |||||| |||||
Sbjct: 87  cggctccccgggtggccctccggttacagggacaagaacacagctcaaggacggtaggca 146

                                                                 
Query: 282 cgtggcctacctggaatccggcgtcccaaaggagcgggccaggtacaagatcat 335
             ||||||||||||| ||||||||||||||||| | ||||| ||||||||||||
Sbjct: 147 tttggcctacctggagtccggcgtcccaaaggaccaggccaagtacaagatcat 200
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>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04,
             complete sequence
          Length = 143301

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 96/114 (84%)
 Strand = Plus / Plus

                                                                         
Query: 222   cggctcgccgggcgggcctccggtcacggcgaccaggacgaagctcagggacggcaggca 281
             |||||| ||||| || |||||||| || | ||| || ||  |||||| |||||| |||||
Sbjct: 83050 cggctccccgggtggccctccggttacagggacaagaacacagctcaaggacggtaggca 83109

                                                                   
Query: 282   cgtggcctacctggaatccggcgtcccaaaggagcgggccaggtacaagatcat 335
               ||||||||||||| ||||||||||||||||| | ||||| ||||||||||||
Sbjct: 83110 tttggcctacctggagtccggcgtcccaaaggaccaggccaagtacaagatcat 83163



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 284   tggcctacctggaatccggcgtcccaaaggagcgggccaggtacaagatcat 335
             ||||||||||||| |||||||| |||||||||| ||||| ||||||||||||
Sbjct: 91452 tggcctacctggagtccggcgttccaaaggagcaggccaagtacaagatcat 91503
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 96/114 (84%)
 Strand = Plus / Plus

                                                                            
Query: 222      cggctcgccgggcgggcctccggtcacggcgaccaggacgaagctcagggacggcaggca 281
                |||||| ||||| || |||||||| || | ||| || ||  |||||| |||||| |||||
Sbjct: 20352417 cggctccccgggtggccctccggttacagggacaagaacacagctcaaggacggtaggca 20352476

                                                                      
Query: 282      cgtggcctacctggaatccggcgtcccaaaggagcgggccaggtacaagatcat 335
                  ||||||||||||| ||||||||||||||||| | ||||| ||||||||||||
Sbjct: 20352477 tttggcctacctggagtccggcgtcccaaaggaccaggccaagtacaagatcat 20352530



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 284      tggcctacctggaatccggcgtcccaaaggagcgggccaggtacaagatcat 335
                ||||||||||||| |||||||| |||||||||| ||||| ||||||||||||
Sbjct: 20360819 tggcctacctggagtccggcgttccaaaggagcaggccaagtacaagatcat 20360870
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>dbj|AK102032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081A11, full
           insert sequence
          Length = 1293

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 96/114 (84%)
 Strand = Plus / Plus

                                                                       
Query: 222 cggctcgccgggcgggcctccggtcacggcgaccaggacgaagctcagggacggcaggca 281
           |||||| ||||| || |||||||| || | ||| || ||  |||||| |||||| |||||
Sbjct: 128 cggctccccgggtggccctccggttacagggacaagaacacagctcaaggacggtaggca 187

                                                                 
Query: 282 cgtggcctacctggaatccggcgtcccaaaggagcgggccaggtacaagatcat 335
             ||||||||||||| ||||||||||||||||| | ||||| ||||||||||||
Sbjct: 188 tttggcctacctggagtccggcgtcccaaaggaccaggccaagtacaagatcat 241
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                            
Query: 263      agctcagggacggcaggcacgtggcctacctggaatccggcgtcccaaaggagcgggcca 322
                |||||| ||| || |||||| |||||||||  || | ||||||||| ||||| | |||||
Sbjct: 19613528 agctcaaggatgggaggcacctggcctaccacgagtacggcgtccctaaggatcaggcca 19613587

                                             
Query: 323      ggtacaagatcatattcgtccatggcttc 351
                 | |||||||||| |||||||||||||||
Sbjct: 19613588 agcacaagatcatcttcgtccatggcttc 19613616
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>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0605D08
          Length = 144340

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                         
Query: 263   agctcagggacggcaggcacgtggcctacctggaatccggcgtcccaaaggagcgggcca 322
             |||||| ||| || |||||| |||||||||  || | ||||||||| ||||| | |||||
Sbjct: 79814 agctcaaggatgggaggcacctggcctaccacgagtacggcgtccctaaggatcaggcca 79873

                                          
Query: 323   ggtacaagatcatattcgtccatggcttc 351
              | |||||||||| |||||||||||||||
Sbjct: 79874 agcacaagatcatcttcgtccatggcttc 79902
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>dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E04, full
           insert sequence
          Length = 1405

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 263 agctcagggacggcaggcacgtggcctacctggaatccggcgtcccaaaggagcgggcca 322
           |||||| ||| || |||||| |||||||||  || | ||||||||| ||||| | |||||
Sbjct: 338 agctcaaggatgggaggcacctggcctaccacgagtacggcgtccctaaggatcaggcca 397

                                        
Query: 323 ggtacaagatcatattcgtccatggcttc 351
            | |||||||||| |||||||||||||||
Sbjct: 398 agcacaagatcatcttcgtccatggcttc 426
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>dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H03, full
           insert sequence
          Length = 1399

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 263 agctcagggacggcaggcacgtggcctacctggaatccggcgtcccaaaggagcgggcca 322
           |||||| ||| || |||||| |||||||||  || | ||||||||| ||||| | |||||
Sbjct: 338 agctcaaggatgggaggcacctggcctaccacgagtacggcgtccctaaggatcaggcca 397

                                        
Query: 323 ggtacaagatcatattcgtccatggcttc 351
            | |||||||||| |||||||||||||||
Sbjct: 398 agcacaagatcatcttcgtccatggcttc 426
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>dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119A16, full
           insert sequence
          Length = 1391

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 263 agctcagggacggcaggcacgtggcctacctggaatccggcgtcccaaaggagcgggcca 322
           |||||| ||| || |||||| |||||||||  || | ||||||||| ||||| | |||||
Sbjct: 339 agctcaaggatgggaggcacctggcctaccacgagtacggcgtccctaaggatcaggcca 398

                                        
Query: 323 ggtacaagatcatattcgtccatggcttc 351
            | |||||||||| |||||||||||||||
Sbjct: 399 agcacaagatcatcttcgtccatggcttc 427
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>dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D10, full
           insert sequence
          Length = 1409

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 263 agctcagggacggcaggcacgtggcctacctggaatccggcgtcccaaaggagcgggcca 322
           |||||| ||| || |||||| |||||||||  || | ||||||||| ||||| | |||||
Sbjct: 338 agctcaaggatgggaggcacctggcctaccacgagtacggcgtccctaaggatcaggcca 397

                                        
Query: 323 ggtacaagatcatattcgtccatggcttc 351
            | |||||||||| |||||||||||||||
Sbjct: 398 agcacaagatcatcttcgtccatggcttc 426
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 18      cgctccgcgcttccagacaaac 39
               ||||||||||||||||||||||
Sbjct: 1619001 cgctccgcgcttccagacaaac 1619022
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>emb|BX005098.11| Zebrafish DNA sequence from clone DKEY-211F22 in linkage group 7,
            complete sequence
          Length = 100658

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 26   gcttccagacaaaccagccgatcga 50
            |||| ||||||||||||||||||||
Sbjct: 2497 gcttacagacaaaccagccgatcga 2521
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>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   cggtcacggcgaccaggacg 261
             ||||||||||||||||||||
Sbjct: 33707 cggtcacggcgaccaggacg 33726
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>dbj|AP002086.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence
          Length = 217594

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 365    acgacgtgctcaacgtctcc 384
              ||||||||||||||||||||
Sbjct: 100654 acgacgtgctcaacgtctcc 100673
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 177     ggcgctgctctacagccaga 196
               ||||||||||||||||||||
Sbjct: 3283670 ggcgctgctctacagccaga 3283689
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>gb|AE004523.1| Pseudomonas aeruginosa PAO1, section 84 of 529 of the complete genome
          Length = 11418

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 365  acgacgtgctcaacgtctcc 384
            ||||||||||||||||||||
Sbjct: 4781 acgacgtgctcaacgtctcc 4800
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 121     gccatgccggccggcgctgc 140
               ||||||||||||||||||||
Sbjct: 2350270 gccatgccggccggcgctgc 2350251
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>dbj|AB039932.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, VAR region, complete cds
          Length = 73934

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   acgacgtgctcaacgtctcc 384
             ||||||||||||||||||||
Sbjct: 61086 acgacgtgctcaacgtctcc 61105


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,324,743
Number of Sequences: 3902068
Number of extensions: 2324743
Number of successful extensions: 42662
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42407
Number of HSP's gapped (non-prelim): 255
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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