ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast69e11 |
|---|---|
| Clone Library Name | barley_pub |
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 102 bits (253), Expect = 3e-22 Identities = 47/57 (82%), Positives = 52/57 (91%) Frame = +2 Query: 104 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 MS R SRT+YVGNLPGDIREREVEDLF KYG +V+IDLKVPPRPPG+AFVEF+D RD Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARD 57
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 73.6 bits (179), Expect = 1e-13 Identities = 34/49 (69%), Positives = 41/49 (83%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +YVGNLPGD+RE+EVED+F+KYGRI +D+K R P FAFVEFED RD Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRD 58
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 72.4 bits (176), Expect = 3e-13 Identities = 35/49 (71%), Positives = 39/49 (79%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 IYVGNLP DIR ++VED+FYKYG I +IDLK P FAFVEFEDPRD Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD 65
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 72.4 bits (176), Expect = 3e-13 Identities = 35/49 (71%), Positives = 39/49 (79%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 IYVGNLP DIR ++VED+FYKYG I +IDLK P FAFVEFEDPRD Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD 65
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 72.0 bits (175), Expect = 4e-13 Identities = 34/49 (69%), Positives = 39/49 (79%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 IYVGNLP DIR +++ED+FYKYG I +IDLK P FAFVEFEDPRD Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD 65
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 72.0 bits (175), Expect = 4e-13 Identities = 34/49 (69%), Positives = 39/49 (79%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 IYVGNLP DIR +++ED+FYKYG I +IDLK P FAFVEFEDPRD Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD 65
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 72.0 bits (175), Expect = 4e-13 Identities = 34/49 (69%), Positives = 39/49 (79%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 IYVGNLP DIR +++ED+FYKYG I +IDLK P FAFVEFEDPRD Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD 65
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 72.0 bits (175), Expect = 4e-13 Identities = 34/49 (69%), Positives = 39/49 (79%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 IYVGNLP DIR +++ED+FYKYG I +IDLK P FAFVEFEDPRD Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD 65
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 72.0 bits (175), Expect = 4e-13 Identities = 34/49 (69%), Positives = 39/49 (79%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 IYVGNLP DIR +++ED+FYKYG I +IDLK P FAFVEFEDPRD Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD 66
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 71.2 bits (173), Expect = 6e-13 Identities = 34/49 (69%), Positives = 39/49 (79%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 IYVGNLP D+RE+++EDLFYKYGRI EI+LK FAFV FEDPRD Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRD 65
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 70.5 bits (171), Expect = 1e-12 Identities = 34/49 (69%), Positives = 39/49 (79%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 IYVGNLP D+RE+++EDLFYKYGRI EI+LK FAFV FEDPRD Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRD 64
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 70.5 bits (171), Expect = 1e-12 Identities = 34/49 (69%), Positives = 39/49 (79%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 IYVGNLP D+RE+++EDLFYKYGRI EI+LK FAFV FEDPRD Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRD 64
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 54.7 bits (130), Expect = 6e-08 Identities = 25/49 (51%), Positives = 36/49 (73%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +YVG LP D +E+E++F ++GRI ++ V RPPGFAFVE++D RD Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRD 51
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/49 (53%), Positives = 32/49 (65%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +++G L RE++VE F YGRI +IDLK GF FVEFEDPRD Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRD 49
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 50.4 bits (119), Expect = 1e-06 Identities = 22/49 (44%), Positives = 34/49 (69%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +Y+G L ++RE++++ F YGR++E+DLK G+ FVEFED RD Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRD 47
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/49 (53%), Positives = 32/49 (65%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +++G L RE++VE F YGRI +IDLK GF FVEFEDPRD Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRD 49
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/49 (53%), Positives = 32/49 (65%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +++G L RE++VE F YGRI +IDLK GF FVEFEDPRD Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRD 49
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 49.7 bits (117), Expect = 2e-06 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = +2 Query: 110 RRWSRT--IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 R W +YVGNL + E+E F KYG + + V PPGFAFVEFED RD Sbjct: 5 REWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRD 59
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 48.9 bits (115), Expect = 3e-06 Identities = 24/49 (48%), Positives = 32/49 (65%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +Y+G L RER+VE F YG+I+E+DLK G+ FVEF+D RD Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRD 47
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 48.9 bits (115), Expect = 3e-06 Identities = 24/49 (48%), Positives = 32/49 (65%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +Y+G L RER+VE F YG+I+E+DLK G+ FVEF+D RD Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRD 47
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 47.8 bits (112), Expect = 7e-06 Identities = 23/51 (45%), Positives = 33/51 (64%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 R ++VGN + R+ ++E LF KYGR+ +D+K G+AFV FED RD Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMK-----SGYAFVYFEDERD 47
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 47.8 bits (112), Expect = 7e-06 Identities = 25/49 (51%), Positives = 31/49 (63%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +YVGNL + + E+E F YG + + V PPGFAFVEFEDPRD Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRD 58
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 47.8 bits (112), Expect = 7e-06 Identities = 25/49 (51%), Positives = 31/49 (63%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +YVGNL + + E+E F YG + + V PPGFAFVEFEDPRD Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRD 58
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 46.2 bits (108), Expect = 2e-05 Identities = 18/49 (36%), Positives = 31/49 (63%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 S +++GNLP ++ + E++D F YG +VE+ + + P F FV F+D Sbjct: 339 SHQLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFDD 387
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 46.2 bits (108), Expect = 2e-05 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 + ++ GN D RE ++E LF KYG++ +D+K GFAFV ED RD Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKA-----GFAFVYMEDERD 47
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 45.8 bits (107), Expect = 3e-05 Identities = 24/49 (48%), Positives = 30/49 (61%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +YVGNL + E+E F YG + + + PPGFAFVEFEDPRD Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRD 59
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 45.8 bits (107), Expect = 3e-05 Identities = 24/49 (48%), Positives = 31/49 (63%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +YVG LP +RER++E F YGR +I +K G+ FVEFED RD Sbjct: 5 VYVGGLPYGVRERDLERFFKGYGRTRDILIK-----NGYGFVEFEDYRD 48
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 45.8 bits (107), Expect = 3e-05 Identities = 24/49 (48%), Positives = 30/49 (61%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +YVGNL + E+E F YG + + + PPGFAFVEFEDPRD Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRD 88
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 45.8 bits (107), Expect = 3e-05 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 + ++ GN D RE ++E LF KYG++ +D+K GFAFV ED RD Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA-----GFAFVYMEDERD 47
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 45.8 bits (107), Expect = 3e-05 Identities = 23/49 (46%), Positives = 31/49 (63%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +Y+G +P + RER+VE YG+I I +K GFAFV+FED RD Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKY-----GFAFVDFEDSRD 47
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 45.4 bits (106), Expect = 4e-05 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDP 268 RTI++G LP D+ E E++ F K+G I +I + K+ + G+AF+ F+DP Sbjct: 107 RTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDP 158
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 44.7 bits (104), Expect = 6e-05 Identities = 17/49 (34%), Positives = 31/49 (63%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 S +++GNLP ++ + E++D F +G +VE+ + + P F FV F+D Sbjct: 337 SHQLFIGNLPHEVDKSELKDFFQNFGNVVELRINSGGKLPNFGFVVFDD 385
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 44.3 bits (103), Expect = 8e-05 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLK---VPPRPPGFAFVEFED 265 S ++VGNLP DI E E+++ F +G +VE+ + V + P F FV F+D Sbjct: 330 SHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDD 381
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 44.3 bits (103), Expect = 8e-05 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLK---VPPRPPGFAFVEFED 265 S ++VGNLP DI E E+++ F +G +VE+ + V + P F FV F+D Sbjct: 330 SHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDD 381
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 44.3 bits (103), Expect = 8e-05 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Frame = +2 Query: 107 SRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 +R T V NLP ++ E E+ DLF K GR++ I + KV P GFAFV FE D Sbjct: 171 NRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDD 229
>SRP1_SCHPO (Q10193) Pre-mRNA-splicing factor srp1| Length = 275 Score = 44.3 bits (103), Expect = 8e-05 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Frame = +2 Query: 104 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVP----PRPPGFAFVEFEDPR 271 MSRR RT+YV +R RE+ F +G ++ D+ +P RP FAFVE+ED R Sbjct: 1 MSRRSLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRP--FAFVEYEDSR 58 Query: 272 D 274 D Sbjct: 59 D 59
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 43.5 bits (101), Expect = 1e-04 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +YVGNL +++ ++E F KYG++ + + PPGFAFVEFE D Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAF--NPPGFAFVEFEHRDD 55
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 42.7 bits (99), Expect = 2e-04 Identities = 19/49 (38%), Positives = 30/49 (61%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 +Y+G LP +R+VE F YG++ ++ +K GF FV+F+D RD Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMK-----NGFGFVDFQDQRD 47
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/49 (42%), Positives = 30/49 (61%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 IY+G L + E+++E F YG+I ++ LK GF FVEF+D RD Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK-----NGFGFVEFDDKRD 48
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 42.7 bits (99), Expect = 2e-04 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 +++G L + E+ +E +F KYGRIVEI L + + GFAFV FE P D Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 42.4 bits (98), Expect = 3e-04 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 +++G L + E+ +E +F KYGRIVE+ L + + GFAFV FE P D Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein| Length = 124 Score = 42.4 bits (98), Expect = 3e-04 Identities = 23/58 (39%), Positives = 32/58 (55%) Frame = +2 Query: 101 RMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 R+ +R +YV NLP +I E+ D+F KYG I +I + G AFV +ED D Sbjct: 12 RLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYD 69
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 41.2 bits (95), Expect = 7e-04 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEF 259 +YV NLP I + E+E +F KYG IV+ ++ K+ RP G AFV F Sbjct: 190 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRF 236
>RNP1_YEAST (P32385) Ribonucleoprotein 1| Length = 249 Score = 41.2 bits (95), Expect = 7e-04 Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 4/52 (7%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFY-KYGRI-VEIDLKVPPRPP--GFAFVEFED 265 RT+YVGNLP + R++++ DLF YG+I + + K P + P FAF+EF++ Sbjct: 35 RTLYVGNLPKNCRKQDLRDLFEPNYGKITINMLKKKPLKKPLKRFAFIEFQE 86
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 41.2 bits (95), Expect = 7e-04 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKV---PPRPPGFAFVEFEDPRD 274 RTIYVG L ++ ER + + F +G I +I + R GFAF+E+E D Sbjct: 6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSED 59
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 40.8 bits (94), Expect = 0.001 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 +++G L + E+ +E +F KYGRIVEI L + + GFAFV E P D Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPAD 61
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III| Length = 654 Score = 40.8 bits (94), Expect = 0.001 Identities = 20/52 (38%), Positives = 30/52 (57%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 SR +++GNLP E+E+E+ F K+G+I I + AFV F + RD Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL---SKKNIAFVHFLNIRD 346
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 40.8 bits (94), Expect = 0.001 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDP 268 SR+I+VGN+ D+ ++ED F G+I I L + P G+ ++EFE P Sbjct: 63 SRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESP 115
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 40.4 bits (93), Expect = 0.001 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%) Frame = +2 Query: 101 RMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVP---PRPPGFAFVEFEDPR 271 R R + +++V N+ D R ++ F +YG IV++ + + RP GFA+V+FED R Sbjct: 3 RYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVR 62 Query: 272 D 274 D Sbjct: 63 D 63
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 40.4 bits (93), Expect = 0.001 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%) Frame = +2 Query: 101 RMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVP---PRPPGFAFVEFEDPR 271 R R + +++V N+ D R ++ F +YG IV++ + + RP GFA+V+FED R Sbjct: 3 RYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVR 62 Query: 272 D 274 D Sbjct: 63 D 63
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 40.4 bits (93), Expect = 0.001 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEF 259 R ++VG L + E+E+ D F KYG I I++K P R GFAF+ F Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVF 104 Score = 34.7 bits (78), Expect = 0.065 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 I+VG L +I + E++ F ++G IVE+++ K + GF F+ F+ Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFD 185
>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein| Length = 121 Score = 40.4 bits (93), Expect = 0.001 Identities = 22/55 (40%), Positives = 31/55 (56%) Frame = +2 Query: 101 RMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 R+ +R +YV NLP I E+ D+F K+G I +I + P G AFV +ED Sbjct: 8 RLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYED 62
>PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 40.4 bits (93), Expect = 0.001 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +2 Query: 101 RMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 R+ +R +Y+ NLP I E+ D+F KYG I +I + P G A+V +ED Sbjct: 12 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
>PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 40.4 bits (93), Expect = 0.001 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +2 Query: 101 RMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 R+ +R +Y+ NLP I E+ D+F KYG I +I + P G A+V +ED Sbjct: 12 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = +2 Query: 92 KQGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFE 262 K G + ++VGNLP DI E E+ LF KYG+ E+ + + GF F+ E Sbjct: 69 KPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---KDKGFGFIRLE 122
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 40.0 bits (92), Expect = 0.002 Identities = 16/49 (32%), Positives = 32/49 (65%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 +RT+++GNL ++ ++F ++G IV+ID+K P +AF+++ D Sbjct: 438 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCD 486 Score = 37.0 bits (84), Expect = 0.013 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Frame = +2 Query: 113 RWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPG--FAFVEFED 265 R +R ++VGNLP ++RE ++ + F +YGR+ + + G AFV+F D Sbjct: 3 RETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVD 55
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Frame = +2 Query: 113 RWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPR---PPGFAFVEFEDP 268 R S ++V NLP D E ++E +F K+G+I EI + R GFA+V++ +P Sbjct: 298 RLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEP 352 Score = 29.6 bits (65), Expect = 2.1 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYG--RIVEIDLKVPPRPPGFAFVEFEDPRD 274 I + NLP +++V LF YG R V + K GF F +F R+ Sbjct: 704 IIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSARE 754
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Frame = +2 Query: 92 KQGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 K+ R S I+VG +P + E E+++ F ++G + E+ + RP GF F+ FE Sbjct: 104 KEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFE 163 Query: 263 D 265 D Sbjct: 164 D 164 Score = 31.2 bits (69), Expect = 0.72 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDP 268 ++VG L + + F +YG +V+ + K + GF FV+F+DP Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = +2 Query: 92 KQGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFE 262 K G + ++VGNLP DI E E+ LF KYG+ E+ + + GF F+ E Sbjct: 64 KPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---KDKGFGFIRLE 117
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = +2 Query: 92 KQGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFE 262 K G + ++VGNLP DI E E+ LF KYG+ E+ + + GF F+ E Sbjct: 64 KPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---KDKGFGFIRLE 117
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%) Frame = +2 Query: 110 RRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPG--FAFVEFED 265 +R +R +++GNL + E E+ F KYG I E+ +K P R G +AF++F++ Sbjct: 6 QRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQN 59
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEF 259 +YV NLP I + E+E +F KYG IV+ ++ K+ +P G AFV F Sbjct: 173 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRF 219
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = +2 Query: 92 KQGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFE 262 K G + ++VGNLP DI E E+ LF KYG+ E+ + + GF F+ E Sbjct: 66 KPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---KDKGFGFIRLE 119
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 40.0 bits (92), Expect = 0.002 Identities = 16/49 (32%), Positives = 32/49 (65%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 +RT+++GNL ++ ++F ++G IV+ID+K P +AF+++ D Sbjct: 437 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCD 485 Score = 37.0 bits (84), Expect = 0.013 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Frame = +2 Query: 113 RWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPG--FAFVEFED 265 R +R ++VGNLP ++RE ++ + F +YGR+ + + G AFV+F D Sbjct: 3 RETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVD 55
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%) Frame = +2 Query: 110 RRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPG--FAFVEFED 265 +R +R +++GNL + E E+ F KYG I E+ +K P R G +AF++F++ Sbjct: 6 QRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQN 59
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFED 265 SR +Y+G++P D E ++ DL G ++ + + P R G+AF+EF D Sbjct: 17 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRD 68
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 39.7 bits (91), Expect = 0.002 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + ++VG L D E+ + D F +G IV+I++ K + GFAFVEF+D Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDD 172
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 R+++VGN+P + E +++D+F + G +V L + +P G+ F E++D Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 R+++VGN+P + E +++D+F + G +V L + +P G+ F E++D Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 39.3 bits (90), Expect = 0.003 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +2 Query: 92 KQGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 K R S I+VG +P + E E+ + F K+G + E+ + RP GF F+ FE Sbjct: 103 KGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE 162 Query: 263 D 265 D Sbjct: 163 D 163 Score = 31.2 bits (69), Expect = 0.72 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDP 268 ++VG L + + F +YG +V+ + K + GF FV+F+DP Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 38.9 bits (89), Expect = 0.003 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 S I+VG +P + E E+ + F K+G + E+ + RP GF F+ FED Sbjct: 112 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163 Score = 31.2 bits (69), Expect = 0.72 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDP 268 ++VG L + + F +YG +V+ + K + GF FV+F+DP Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 R+++VGN+P + E +++D+F + G +V L + +P G+ F E++D Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 R+++VGN+P + E +++D+F + G +V L + +P G+ F E++D Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 38.9 bits (89), Expect = 0.003 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFED 265 ++VG L D +++++D F K+G +V+ +K+ P R GF F+ F+D Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 125
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 38.9 bits (89), Expect = 0.003 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFED 265 ++VG L D +++++D F K+G +V+ +K+ P R GF F+ F+D Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 118
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 R+++VGN+P + E +++D+F + G +V L + +P G+ F E++D Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 R+++VGN+P + E +++D+F + G +V L + +P G+ F E++D Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 38.1 bits (87), Expect = 0.006 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 3/61 (4%) Frame = +2 Query: 101 RMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVP---PRPPGFAFVEFEDPR 271 R +R + ++++ N+ R ++ F +YG IV++ + + RP GFA+V+FED R Sbjct: 3 RYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVR 62 Query: 272 D 274 D Sbjct: 63 D 63
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 +++GNLP + E+E+ LF +YG+++E D+ + FV ED Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIED 44 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 S ++VGN+ +E+ F +YG ++E D+ +AFV E D Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDI-----VKDYAFVHMERAED 123
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 +++GNLP + E+E+ LF +YG+++E D+ + FV ED Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIED 44 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 S ++VGN+ +E+ F +YG ++E D+ +AFV E D Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDI-----VKDYAFVHMERAED 123
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 38.1 bits (87), Expect = 0.006 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 +YVGNLP D+ +E LF ++G++VE + + R GF FV D Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 +++GNLP + E+E+ LF +YG+++E D+ + FV ED Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIED 44 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 S ++VGN+ +E+ F +YG ++E D+ +AFV E D Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDI-----VKDYAFVHMERAED 123
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 38.1 bits (87), Expect = 0.006 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFED 265 +++G L D +++++D F K+G +V+ LK+ P R GF FV F++ Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE 147
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 38.1 bits (87), Expect = 0.006 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFED 265 +++G L D +++++D F K+G +V+ LK+ P R GF FV F++ Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE 147
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 +++GNLP + E+E+ LF +YG+++E D+ + FV ED Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIED 44 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 S ++VGN+ +E+ F +YG ++E D+ +AFV E D Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDI-----VKDYAFVHMERAED 123
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 +++GNLP + E+E+ LF +YG+++E D+ + FV ED Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIED 44 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 S ++VGN+ +E+ F +YG ++E D+ +AFV E D Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDI-----VKDYAFVHMERAED 123
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 +++GNLP + E+E+ LF +YG+++E D+ + FV ED Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIED 44 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 S ++VGN+ +E+ F +YG ++E D+ +AFV E D Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDI-----VKDYAFVHMERAED 123
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 +++GNLP + E+E+ LF +YG+++E D+ + FV ED Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIED 44 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 S ++VGN+ +E+ F +YG ++E D+ +AFV E D Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDI-----VKDYAFVHMERAED 123
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 37.7 bits (86), Expect = 0.008 Identities = 19/45 (42%), Positives = 27/45 (60%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFE 262 ++VGNLP DI E E + LF KYG E+ + + GF F++ E Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPGEVFIN---KGKGFGFIKLE 340
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 37.7 bits (86), Expect = 0.008 Identities = 19/45 (42%), Positives = 27/45 (60%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFE 262 ++VGNLP DI E E + LF KYG E+ + + GF F++ E Sbjct: 291 LFVGNLPADITEDEFKRLFAKYGEPGEVFIN---KGKGFGFIKLE 332
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 37.7 bits (86), Expect = 0.008 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPR 271 S I+VG LP ++ E ++ +F +YG IV I+L K + GF F+ +ED R Sbjct: 35 SAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQR 88
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 37.7 bits (86), Expect = 0.008 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 2/54 (3%) Frame = +2 Query: 110 RRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPR--PPGFAFVEFED 265 +R +RT+++GNL + E ++ F ++G I E+D+K P R + F++FE+ Sbjct: 370 QRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFEN 423
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 37.4 bits (85), Expect = 0.010 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 3/47 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEF 259 +YV NLP I + +++ +F KYG IV+ ++ K+ +P G AFV F Sbjct: 198 LYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRF 244
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 37.4 bits (85), Expect = 0.010 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKV----PPRPPGFAFVEFEDP 268 +++G L ++ + + ++F YG+I ID+ V P G+A+VEFE+P Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP 213
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 37.4 bits (85), Expect = 0.010 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKV----PPRPPGFAFVEFEDP 268 +++G L ++ + + ++F YG+I ID+ V P G+A+VEFE+P Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP 213
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 37.4 bits (85), Expect = 0.010 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKV----PPRPPGFAFVEFEDP 268 +++G L ++ + + ++F YG+I ID+ V P G+A+VEFE+P Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP 213
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 37.4 bits (85), Expect = 0.010 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKV----PPRPPGFAFVEFEDP 268 +++G L ++ + + ++F YG+I ID+ V P G+A+VEFE+P Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP 213
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 37.4 bits (85), Expect = 0.010 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKV----PPRPPGFAFVEFEDP 268 +++G L ++ + + ++F YG+I ID+ V P G+A+VEFE+P Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP 213
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 37.4 bits (85), Expect = 0.010 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFED 265 +++G L D +++++D F K+G +V+ LK+ P R GF FV F++ Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKE 145
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 37.4 bits (85), Expect = 0.010 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKV---PPRPPGFAFVEFEDP 268 S ++V NLP E ++E LF KYG + E+ + +P GFAF+ F P Sbjct: 401 SGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFP 453
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 37.4 bits (85), Expect = 0.010 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPR 271 SR ++VG D+ E++ F +YG +V++ + P R FAFV F D + Sbjct: 190 SRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFR--AFAFVTFADDK 238
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 37.4 bits (85), Expect = 0.010 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 3/47 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEF 259 +YV NLP I + +++ +F KYG IV+ ++ K+ RP G AFV + Sbjct: 215 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 261
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 37.4 bits (85), Expect = 0.010 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 3/47 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEF 259 +YV NLP I + +++ +F KYG IV+ ++ K+ RP G AFV + Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 259
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 37.0 bits (84), Expect = 0.013 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++VG L D E+ +E +F KYG+I E+ + + R GF FV FE+ D Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 37.0 bits (84), Expect = 0.013 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++VG L D E+ +E +F KYG+I E+ + + R GF FV FE+ D Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 37.0 bits (84), Expect = 0.013 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + I+VG + D E + D F KYG+I I++ + + GFAFV F+D Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 37.0 bits (84), Expect = 0.013 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + I+VG + D E + D F KYG+I I++ + + GFAFV F+D Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 37.0 bits (84), Expect = 0.013 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +2 Query: 92 KQGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 KQ + SR ++VG D+ E E+ + F +YG ++++ + P R FAFV F D Sbjct: 181 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFR--AFAFVTFAD 236
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 37.0 bits (84), Expect = 0.013 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + ++VG + ++ E ++ D F +YG +V + K + GFAFVEF+D Sbjct: 108 KKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDD 158
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 37.0 bits (84), Expect = 0.013 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 +RT+++GNL DI E+ F +G I+EID+K +AF ++ D Sbjct: 655 TRTLFIGNLEKDITAGELRSHFEAFGEIIEIDIK-KQGLNAYAFCQYSD 702
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 37.0 bits (84), Expect = 0.013 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + I+VG + D E + D F KYG+I I++ + + GFAFV F+D Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 36.6 bits (83), Expect = 0.017 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKV----PPRPPGFAFVEFEDPRD 274 +++G L ++ + + ++F YG+I ID+ V P G+A+VEFE P + Sbjct: 140 VHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEE 192
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 36.6 bits (83), Expect = 0.017 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++VG L D E+ +E +F KYG+I E+ + + R GF FV FE+ D Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 36.6 bits (83), Expect = 0.017 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++VG L D E+ +E +F KYG+I E+ + + R GF FV FE+ D Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 36.6 bits (83), Expect = 0.017 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++VG L D E+ +E +F KYG+I E+ + + R GF FV FE+ D Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 36.2 bits (82), Expect = 0.022 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFEDPRD 274 S T+++GNL + + +LF K+G +V + + P +P GF +V+F + D Sbjct: 266 SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMED 320
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 36.2 bits (82), Expect = 0.022 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 +IYVGNL D+ E ++ +F +YG + + L + R GF FVE E Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELE 50
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 35.8 bits (81), Expect = 0.029 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + I+VG + D E + D F +YG+I I++ + + GFAFV F+D Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 154
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 35.8 bits (81), Expect = 0.029 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++YVG+LP D+ E + D F G ++ I + + R G+A+V F+ P D Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPAD 55 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIV--EIDLKVPPRPPGFAFVEFE 262 +YV N D + ++++ F YG+I ++ K + GF FV FE Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFE 231
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 35.8 bits (81), Expect = 0.029 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + I+VG + D E + D F +YG+I I++ + + GFAFV F+D Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 154
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 35.8 bits (81), Expect = 0.029 Identities = 16/30 (53%), Positives = 20/30 (66%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL 217 I+VGNL R EV +LF KYG +VE D+ Sbjct: 88 IFVGNLTDKTRAPEVRELFQKYGTVVECDI 117 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFE 262 +++GNL + E+ LF KYG +VE D+ + GF +E E Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDV---VKNYGFVHMETE 50
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 35.8 bits (81), Expect = 0.029 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = +2 Query: 89 CKQGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFE 262 C++ + S R +Y+GNL D+ E E+++LF YG I E + FAF++ + Sbjct: 104 CEEIKFSGR--NRLYIGNLTSDVTEEELKELFSPYGEISEAFINA---EKNFAFLKID 156
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 35.8 bits (81), Expect = 0.029 Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Frame = +2 Query: 107 SRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPR-PPGFAFVEFEDPRD 274 S+ + ++V N+P R+ ++ +F ++G+I+++++ R GF FV FE+ D Sbjct: 116 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 172
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 35.8 bits (81), Expect = 0.029 Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Frame = +2 Query: 107 SRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPR-PPGFAFVEFEDPRD 274 S+ + ++V N+P R+ ++ +F ++G+I+++++ R GF FV FE+ D Sbjct: 111 SKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 167
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 35.8 bits (81), Expect = 0.029 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + I+VG + D E + D F +YG+I I++ + + GFAFV F+D Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 154
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 35.8 bits (81), Expect = 0.029 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + I+VG + D E + D F +YG+I I++ + + GFAFV F+D Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 154
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 35.8 bits (81), Expect = 0.029 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + I+VG + D E + D F +YG+I I++ + + GFAFV F+D Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 154
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 35.4 bits (80), Expect = 0.038 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = +2 Query: 104 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRP---PGFAFVEFED 265 MS ++VGN+P D+ E+++ ++F + G + L + P G+ F EF D Sbjct: 1 MSMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 35.4 bits (80), Expect = 0.038 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + ++VG + D E + + F +YG+I I++ K + GFAFV F+D Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDD 150
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 35.4 bits (80), Expect = 0.038 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%) Frame = +2 Query: 98 GRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP----RPPGFAFVEFE 262 G + RT++VGNL + E + +LF++ G ++++ K+P +P FAFV F+ Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKV--KIPKDKDGKPKQFAFVNFK 58
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 35.4 bits (80), Expect = 0.038 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = +2 Query: 104 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRP---PGFAFVEFEDPRD 274 +S R + +++ NL +E + LF +YG + E+ L + + GFA V+FEDP + Sbjct: 295 VSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPEN 354
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 35.4 bits (80), Expect = 0.038 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = +2 Query: 107 SRRWSRTIYVGNLPGDIREREVEDLFYKYGRI--VEIDLKVPPRPPGFAFVEFEDPRD 274 S + S I V NLP + ++V +LF +G++ V + K GFAFVEF P++ Sbjct: 758 SNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKE 815
>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2| Length = 365 Score = 35.4 bits (80), Expect = 0.038 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 ++VG +P ++ D F YG+I++ L GF FVE ED RD Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM-----NGFGFVEVEDARD 49
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 35.4 bits (80), Expect = 0.038 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIV--EIDLKVPPRPPGFAFVEFEDPRD 274 + V NLP ++ ++EV LF YG++V I K GFAF EF ++ Sbjct: 706 LVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKE 756 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPR--PPGFAFVEFEDP 268 +++ NL + E +V + F K+G +VE+ + + + GFA + +E P Sbjct: 310 LFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKP 358
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 35.4 bits (80), Expect = 0.038 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%) Frame = +2 Query: 98 GRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP----RPPGFAFVEFE 262 G + RT++VGNL + E + +LF++ G ++++ K+P +P FAFV F+ Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKV--KIPKDKDGKPKQFAFVNFK 58
>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein| Length = 138 Score = 35.0 bits (79), Expect = 0.050 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 +R +Y+ NLP I E+ ++F K+G + +I + G AFV +ED Sbjct: 18 NRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYED 66
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 35.0 bits (79), Expect = 0.050 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL--KVPPRPPGFAFVEF 259 +Y+ NL +I E+E DLF ++G I + L +P GF FV + Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNY 308 Score = 28.9 bits (63), Expect = 3.6 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 S ++YVG L + E + +LF G + I + V R G+A+V F + D Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMED 133
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 35.0 bits (79), Expect = 0.050 Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPR-PPGFAFVEFEDPRD 274 + ++V N+P R+ ++ +F ++G+I+++++ R GF FV FE+ D Sbjct: 117 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 168
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 34.7 bits (78), Expect = 0.065 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 +R+IYVGN+ E+E F+ G + + + K P GFA++EF D Sbjct: 170 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD 221
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 34.7 bits (78), Expect = 0.065 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 +R+IYVGN+ E+E F+ G + + + K P GFA++EF D Sbjct: 170 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD 221
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 34.7 bits (78), Expect = 0.065 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 +R+IYVGN+ E+E F+ G + + + K P GFA++EF D Sbjct: 166 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD 217
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 34.7 bits (78), Expect = 0.065 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVE---IDLKVPPRPPGFAFV 253 +YVGNLP D+ +E LF ++G++V + + R GF FV Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFV 195
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 34.7 bits (78), Expect = 0.065 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDP 268 ++++YVGN+ + E++ F G + + + K P GFA++EF +P Sbjct: 54 AQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 34.7 bits (78), Expect = 0.065 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + I+VG + D E + + F +YG+I I++ + + GFAFV FED Sbjct: 105 KKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFED 155
>CPB2_CAERE (Q6E3F2) Cytoplasmic polyadenylation element-binding protein 2| Length = 571 Score = 34.7 bits (78), Expect = 0.065 Identities = 12/29 (41%), Positives = 22/29 (75%) Frame = +2 Query: 116 WSRTIYVGNLPGDIREREVEDLFYKYGRI 202 +SR ++VG LPG ++E ++ + F +YGR+ Sbjct: 234 YSRKVFVGGLPGCVKESDILNFFSRYGRL 262
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 34.3 bits (77), Expect = 0.085 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEF 259 +YV NL I + ++E +F KYG+IV+ ++ K P G AF+ F Sbjct: 166 LYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRF 212
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 34.3 bits (77), Expect = 0.085 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFV 253 IYVGN+P DI + +E +F ++G++V + + R GF FV Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFV 237
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 34.3 bits (77), Expect = 0.085 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + I+VG + D E + D F YG+I I++ + + GFAFV F+D Sbjct: 118 KKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDD 168
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 34.3 bits (77), Expect = 0.085 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFEDP 268 +++G L D E + + F KYG + ++ + P R GF F+ FE P Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKP 210 Score = 33.1 bits (74), Expect = 0.19 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 I+VG + D+R +E E+ F ++G I++ L K + GF FV ++ Sbjct: 245 IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYD 292
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 34.3 bits (77), Expect = 0.085 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRI--VEIDLKVPPRPPGFAFVEFEDPRD 274 I V NLP + ++V +LF +G++ V + K GFAFVEF P++ Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKE 790
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 34.3 bits (77), Expect = 0.085 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 S TIYVGNL E ++ +LF K G I +I + + P GF F+ ++ P++ Sbjct: 45 SATIYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTPQE 99
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 33.9 bits (76), Expect = 0.11 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + ++VG L + E + + F ++G +V + L K + GFAFVEF+D Sbjct: 123 KKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDD 173
>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)| Length = 452 Score = 33.9 bits (76), Expect = 0.11 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKY-GRIVEIDLKVPP--RPPGFAFVEF 259 RT+YVGNLP + EV +LF Y G ++ + P P +A+VEF Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVEF 211
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 33.9 bits (76), Expect = 0.11 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Frame = +2 Query: 95 QGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPP----GFAFVEFE 262 + R+ + T ++GNLP D+ E ++D F++ I + L P P GF + EFE Sbjct: 87 RSRLPKSPPYTAFLGNLPYDVTEDSIKD-FFRGLNISAVRLPREPSNPDRLKGFGYAEFE 145 Query: 263 D 265 D Sbjct: 146 D 146
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 33.9 bits (76), Expect = 0.11 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + ++VG + D E + D F +YG+I I++ + + GF FV F+D Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 162
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 33.9 bits (76), Expect = 0.11 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFEDP 268 +YVG++ +++E + F +G I I++ P + GFAFVE+E P Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIP 181
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 33.9 bits (76), Expect = 0.11 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVP---PRPPGFAFVEFEDPRD 274 R +YVG L ++ ++ + F +G I +I + + + GFAFVEFE D Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED 59
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 33.9 bits (76), Expect = 0.11 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVP---PRPPGFAFVEFEDPRD 274 R +YVG L ++ ++ + F +G I +I + + + GFAFVEFE D Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED 59
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 33.9 bits (76), Expect = 0.11 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPR-PPGFAFVEFEDPRD 274 + ++V N+P R+ +++ +F K+G + ++++ R GF FV E P+D Sbjct: 153 KRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQD 204
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 33.9 bits (76), Expect = 0.11 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + ++VG L D E + + F +G+IV +++ K + GFAF+EF+D Sbjct: 115 KKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDD 165
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 33.9 bits (76), Expect = 0.11 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRI--VEIDLKVPPRPPGFAFVEFEDPRD 274 I V NLP + ++V +LF +G++ V + K GFAFVEF P++ Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKE 804
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 33.9 bits (76), Expect = 0.11 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL--KVPPRPPGFAFVEFEDP 268 RT++VGNL +RE + +LF + G + ++ + +P F FV F+ P Sbjct: 10 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP 60
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 33.9 bits (76), Expect = 0.11 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL-----KVPPRPPGFAFVEF 259 ++VG +P E+++ +LF +YG + EI++ + PP+ G FV F Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTF 66
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 33.9 bits (76), Expect = 0.11 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Frame = +2 Query: 98 GRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPG----FAFVEFE 262 G + RT++VGNL + E + +LF++ G ++++ K+P G FAFV F+ Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKV--KIPKDKDGKLKQFAFVNFK 58
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 33.9 bits (76), Expect = 0.11 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + ++VG + D E + D F +YG+I I++ + + GF FV F+D Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 150
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 33.5 bits (75), Expect = 0.14 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPR---PPGFAFVEFE 262 +Y+ LP + +++VED+F ++GRI+ + V G AF+ F+ Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 155
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 33.5 bits (75), Expect = 0.14 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPR---PPGFAFVEFE 262 +Y+ LP + +++VED+F ++GRI+ + V G AF+ F+ Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 155
>NONA_DROVI (Q9GRW7) Protein no-on-transient A| Length = 697 Score = 33.5 bits (75), Expect = 0.14 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEI 211 +YVGNL DI + E+ ++F YG I EI Sbjct: 287 LYVGNLTNDITDEELREMFKPYGEIGEI 314
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 33.5 bits (75), Expect = 0.14 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRP--PGFAFVEFEDPRD 274 +Y+ NL D+ E + + F ++G+IV + + G+AFV F++P D Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPED 253 Score = 32.3 bits (72), Expect = 0.32 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKV--PPRPPGFAFVEFE 262 ++V NLP + ++D+F K+G IV + + G+ FV+FE Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFE 160
>NONA_DROLR (Q9GRX4) Protein no-on-transient A| Length = 698 Score = 33.5 bits (75), Expect = 0.14 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEI 211 +YVGNL DI + E+ ++F YG I EI Sbjct: 283 LYVGNLTNDITDEELREMFKPYGEIGEI 310
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 33.5 bits (75), Expect = 0.14 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL-----KVPPRPPGFAFVEF 259 ++VG +P E+++ +LF +YG + EI++ + PP+ G FV F Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 33.5 bits (75), Expect = 0.14 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = +2 Query: 110 RRWSRTIYVGNLPGDIREREVEDLFYKYGRI--VEIDLKVPPRPPGFAFVEFEDPRD 274 ++ S I V NLP + ++V +LF +G++ V + K GFAFVEF P + Sbjct: 708 KKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSE 764
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 33.5 bits (75), Expect = 0.14 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFV 253 +YVGNLP + ++ ++F + G + +++ +V R GFAFV Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFV 160
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 33.5 bits (75), Expect = 0.14 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEF 259 S T+YVGNL E ++ +LF K G + I + KV GF FVE+ Sbjct: 31 SCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEY 80
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 33.1 bits (74), Expect = 0.19 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 ++ +YV + D E + + F KYG + + ++ K +P GF FV F+D Sbjct: 113 TKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 33.1 bits (74), Expect = 0.19 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = +2 Query: 107 SRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 S R R+++VGNLP + E +E F G I+ + + K+ GF +V FE+ Sbjct: 282 SSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFEN 337 Score = 30.8 bits (68), Expect = 0.94 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEI 211 RT++VGNLP +++++ F +YG+I + Sbjct: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESV 214
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 33.1 bits (74), Expect = 0.19 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Frame = +2 Query: 95 QGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPP----GFAFVEFE 262 + R+ + T ++GNLP D+ E +++ F++ I + L P P GF + EFE Sbjct: 87 RSRLPKSPPYTAFLGNLPYDVTEESIKE-FFRGLNISAVRLPREPSNPERLKGFGYAEFE 145 Query: 263 D 265 D Sbjct: 146 D 146
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 33.1 bits (74), Expect = 0.19 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 +++G L + E +E F KYGRI E+ + + R GF FV FE+ D Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDD 58
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 33.1 bits (74), Expect = 0.19 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = +2 Query: 92 KQGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPG 241 ++GR+ R ++V L R ++++LF KYG++V + R PG Sbjct: 397 EKGRVGSGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPG 446
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 33.1 bits (74), Expect = 0.19 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEI 211 +YVGNL DI + E+ ++F YG I EI Sbjct: 304 LYVGNLTNDITDDELREMFKPYGEISEI 331
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 33.1 bits (74), Expect = 0.19 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRI--VEIDLKVPPRPPGFAFVEFEDPRD 274 S I + NLP + +R++ DLF G++ V + K GF FVE+ R+ Sbjct: 718 STKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVRE 771 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 95 QGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP 229 QG R TI V N+P EVE LF ++G + ++ +PP Sbjct: 492 QGAKGPRSDTTILVKNIPYGTSAEEVEKLFGEHGEVDKV--LIPP 534
>MSA1_SCHPO (Q10277) Multicopy suppressor of sporulation protein msa1| Length = 533 Score = 33.1 bits (74), Expect = 0.19 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = +2 Query: 125 TIYVGNL-PGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFE 262 +I+VG L P + + DLF KYG++++ + + P FAF+ F+ Sbjct: 366 SIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFD 412
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 33.1 bits (74), Expect = 0.19 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 RT+++ + D E ++ F YG I +I L + +P G+AF+E+E RD Sbjct: 102 RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERD 155
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 33.1 bits (74), Expect = 0.19 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFV 253 S IYVGN+P I + +E LF ++G++V + + R GF FV Sbjct: 229 SYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFV 276
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 33.1 bits (74), Expect = 0.19 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPR 271 IY+GNL ++ E ++ +F +YG V++ L + GFA++++ED R Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQR 83
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 32.7 bits (73), Expect = 0.25 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 +T++V + D E ++ F YG I I + K +P G+AF+E+E RD Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERD 156
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 32.7 bits (73), Expect = 0.25 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPR--PPGFAFVEFEDPRD 274 +R IY NLP + ++ DLF G++ +L+ + P G A VE+++ D Sbjct: 350 NRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDD 403
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 32.7 bits (73), Expect = 0.25 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 +T++V + D E ++ F YG I I + K +P G+AF+E+E RD Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD 156
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 32.7 bits (73), Expect = 0.25 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL--KVPPRPPGFAFVEFEDPRD 274 +++G L + E+ ++ +F K+G I E+ L + GFAF+ FE+P D Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 32.7 bits (73), Expect = 0.25 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 +T++V + D E ++ F YG I I + K +P G+AF+E+E RD Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD 156
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 32.7 bits (73), Expect = 0.25 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 ++V P D++E E+ ++F +G + E+ + GFAFVEFE+ Sbjct: 127 LFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEE 167
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 32.7 bits (73), Expect = 0.25 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 S T+YVGNL E ++ +LF K G I +I + K+ GF FVE+ D Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRAD 93
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 32.7 bits (73), Expect = 0.25 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 S T+YVGNL E ++ +LF K G I +I + K+ GF FVE+ D Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRAD 93
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 32.7 bits (73), Expect = 0.25 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 S T+YVGNL E ++ +LF K G I +I + K+ GF FVE+ D Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRAD 93
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 32.3 bits (72), Expect = 0.32 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFEDP 268 S ++V NL E ++E LF YG + E+ + +P GFAFV F P Sbjct: 399 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP 451 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 6/55 (10%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPP------GFAFVEFEDPRD 274 I V N+P +RE+ +LF +G + + ++P + GF FV+F +D Sbjct: 826 ILVRNIPFQANQREIRELFSTFGELKTV--RLPKKMTGTGAHRGFGFVDFITKQD 878
>CPB2_CAEEL (Q18317) Cytoplasmic polyadenylation element-binding protein 2| Length = 422 Score = 32.3 bits (72), Expect = 0.32 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +2 Query: 116 WSRTIYVGNLPGDIREREVEDLFYKYGRI 202 +SR ++VG LP ++E ++ + F +YGR+ Sbjct: 86 YSRKVFVGGLPSCVKESDILNFFSRYGRL 114
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 32.3 bits (72), Expect = 0.32 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 +YVGNL + + +E LF + G++VE + + R GF FV ++ ++ Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFV 253 ++VGNLP ++ ++ LF G + +++ K+ R GF FV Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 32.3 bits (72), Expect = 0.32 Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPR---PPGFAFVEFEDPRD 274 ++ +++ NL E +++ LF +G++ ++ + + + P GFA+++F D D Sbjct: 322 TKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADD 376 Score = 31.2 bits (69), Expect = 0.72 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYG--RIVEIDLKVPPRPPGFAFVEFEDPRD 274 I + NLP + +++V+ L YG R V + K GFAF EF R+ Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTARE 773 Score = 28.1 bits (61), Expect = 6.1 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 8/55 (14%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPP--------GFAFVEFED 265 TIYV NL ++ E + +F + ++ P P GF FVEF+D Sbjct: 620 TIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKD 674
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 32.0 bits (71), Expect = 0.42 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 +YVG+LP + E +++ F ++G+++ + + K G+ FVEFE Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFE 94
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 +YV LP + ++E+E LF +YGRI+ + +V G F+ F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLK--VPPRPPGFAFVEFEDPRD 274 +YV N+ + + + ++LF K+G IV L+ + GF FV +E D Sbjct: 220 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 270 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 S ++YVG+L + E + D+F G + I + + G+A+V F D Sbjct: 36 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 87
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 32.0 bits (71), Expect = 0.42 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + I+VG + D E + D YG+I I++ + + GFAFV F+D Sbjct: 118 KKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDD 168
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 +YV LP + ++E+E LF +YGRI+ + +V G F+ F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 +YV LP + ++E+E LF +YGRI+ + +V G F+ F+ Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 +YV LP + ++E+E LF +YGRI+ + +V G F+ F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 +YV LP + ++E+E LF +YGRI+ + +V G F+ F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 +YV LP + ++E+E LF +YGRI+ + +V G F+ F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 +YV LP + ++E+E LF +YGRI+ + +V G F+ F+ Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 186
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 +T++V L + E +++ F YG I + L ++ +P G+AF+E+ RD Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRD 191
>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 352 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKV--PPRPPGFAFVEFEDPR 271 +Y+G LP D+ E ++ LF + GR+ E L + GFA+ + R Sbjct: 60 VYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRR 109
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 32.0 bits (71), Expect = 0.42 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Frame = +2 Query: 113 RWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRP---PGFAFVEFED 265 R R+++VGNLP I + +E+ F G IV + + P GF +V FE+ Sbjct: 288 RDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFEN 341 Score = 30.4 bits (67), Expect = 1.2 Identities = 10/30 (33%), Positives = 21/30 (70%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEI 211 RT++VGNLP +++++ F +YG++ + Sbjct: 189 RTVFVGNLPVTCNKKKLKSFFKEYGQVESV 218
>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2| Length = 208 Score = 32.0 bits (71), Expect = 0.42 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDP 268 S TIYVGNL E ++ +LF K G I I + + P GF F+ + P Sbjct: 45 SSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCP 97
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFE 262 +YV LP + ++E+E LF +YGRI+ + +V G F+ F+ Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
>PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1| Length = 399 Score = 32.0 bits (71), Expect = 0.42 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = +2 Query: 95 QGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 Q R ++ S+ +++ NLP + E E+ DL ++G+IV V AFVEF D Sbjct: 8 QFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGAN-RNQAFVEFAD 63
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 32.0 bits (71), Expect = 0.42 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 IY+ NLP ++ E +V +L +G ++ L GF F EF++P D Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSD 363
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 32.0 bits (71), Expect = 0.42 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Frame = +2 Query: 113 RWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP----RPPGFAFVEFEDPRD 274 R S+T+ V NL E +++LF K +K+P RP G+AFVEF D Sbjct: 458 RESKTLIVNNLSYAASEETLQELFKK-----ATSIKMPQNNQGRPKGYAFVEFPTAED 510 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +2 Query: 113 RWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFE 262 R +RT++V NLP + E E++++F + V + L G A++EF+ Sbjct: 368 RDARTLFVKNLPYRVTEDEMKNVF-ENALEVRLVLNKEGSSKGMAYIEFK 416
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 31.6 bits (70), Expect = 0.55 Identities = 14/47 (29%), Positives = 28/47 (59%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFED 265 T++VG L ++ E++++ F +GRI+ I + P G FV++ + Sbjct: 298 TVFVGGLASNLSEKDLQVCFQPFGRILNIKI---PFGKGCGFVQYSE 341
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 31.6 bits (70), Expect = 0.55 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Frame = +2 Query: 113 RWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRP---PGFAFVEFED 265 R R+++VGNLP + E +E+ F G IV + + P GF +V FE+ Sbjct: 282 RDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFEN 335 Score = 30.4 bits (67), Expect = 1.2 Identities = 10/30 (33%), Positives = 21/30 (70%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEI 211 RT++VGNLP +++++ F +YG++ + Sbjct: 183 RTVFVGNLPVTCNKKKLKSFFKEYGQVESV 212
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 31.6 bits (70), Expect = 0.55 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIV 205 +YV LP + ++E+E LF +YGRI+ Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRII 152
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 31.6 bits (70), Expect = 0.55 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = +2 Query: 92 KQGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFE 262 +Q R + SR I V L + +++V +LF K+G I I + + R GF F+ FE Sbjct: 95 RQARDHPQASRCIGVFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFE 154 Query: 263 DPRD 274 + D Sbjct: 155 NLGD 158
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 31.6 bits (70), Expect = 0.55 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP--RPPGFAFVEFEDPRD 274 +Y+ N D+ + ++++F KYG + + + + GF FV FE D Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHED 243 Score = 31.2 bits (69), Expect = 0.72 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++YVG+L D+ E + + F G I+ I + + R G+A+V F+ P D Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 31.6 bits (70), Expect = 0.55 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Frame = +2 Query: 113 RWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEF 259 R +RT++ L IR R++ED F G++ ++ + + R G A+VEF Sbjct: 163 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 214
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 31.6 bits (70), Expect = 0.55 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++YVG+L D+ E + + F G ++ I + + R G+A+V F+ P D Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP--RPPGFAFVEFEDPRD 274 +Y+ N ++ + +++LF ++G+ + + + P + GF FV +E D Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
>CPB2_CAEBR (Q6E3F3) Cytoplasmic polyadenylation element-binding protein 2| Length = 566 Score = 31.6 bits (70), Expect = 0.55 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = +2 Query: 116 WSRTIYVGNLPGDIREREVEDLFYKYGRI 202 +SR ++VG LP ++E ++ F +YGR+ Sbjct: 236 YSRKVFVGGLPACVKEMDILHFFSRYGRL 264
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 31.6 bits (70), Expect = 0.55 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + ++VG + D E + + F +YG+I ++ K + GF FV F D Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFND 150
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 31.2 bits (69), Expect = 0.72 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = +2 Query: 92 KQGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPG 241 ++GR S R ++V L R +++ LF K+G+++ + R PG Sbjct: 441 EKGRASCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPG 490
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 31.2 bits (69), Expect = 0.72 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFE 262 T +VGNL D+ E ++ D F + + I L + P R GF +VEFE Sbjct: 95 TAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFE 141
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 31.2 bits (69), Expect = 0.72 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFED 265 +YVG+L +I E + +F +GRI I L + R G+ F+ F D Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 300
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 31.2 bits (69), Expect = 0.72 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP---RPPGFAFVEFED 265 +YVG+L +I E + +F +GRI I L + R G+ F+ F D Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 300
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 31.2 bits (69), Expect = 0.72 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 T+YVGN+ I + ++ +LF + ++ I KV G+AF+EF + D Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGD 62
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 31.2 bits (69), Expect = 0.72 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVP--PRPPGFAFVEFEDPRD 274 I++G LP D+ E E+ L K G+I E+ L + G+AFV F + ++ Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRGYAFVTFSNKQE 108
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 31.2 bits (69), Expect = 0.72 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++YVG+L D+ E + + F G I+ I + + R G+A+V F+ P D Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 31.2 bits (69), Expect = 0.72 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP--RPPGFAFVEFEDPRD 274 +Y+ N D+ + ++DLF K+G + + + + GF FV FE D Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 31.2 bits (69), Expect = 0.72 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = +2 Query: 161 EREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ER++ ++F KYG I ++ + + R GFAFV FE+ D Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 31.2 bits (69), Expect = 0.72 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = +2 Query: 161 EREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ER++ ++F KYG I ++ + + R GFAFV FE+ D Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 31.2 bits (69), Expect = 0.72 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = +2 Query: 161 EREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ER++ ++F KYG I ++ + + R GFAFV FE+ D Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 31.2 bits (69), Expect = 0.72 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++YVG+L D+ E + + F G I+ I + + R G+A+V F+ P D Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP--RPPGFAFVEFEDPRD 274 +Y+ N D+ + +++LF K+G + + + + GF FV FE D Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 31.2 bits (69), Expect = 0.72 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++YVG+L D+ E + + F G I+ I + + R G+A+V F+ P D Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP--RPPGFAFVEFEDPRD 274 +Y+ N D+ + +++LF K+G + + + + GF FV FE D Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 31.2 bits (69), Expect = 0.72 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP--RPPGFAFVEFEDPRD 274 +Y+ N D+ + ++DLF K+G + + + + GF FV FE D Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243 Score = 31.2 bits (69), Expect = 0.72 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++YVG+L D+ E + + F G I+ I + + R G+A+V F+ P D Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 31.2 bits (69), Expect = 0.72 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPP--RPPGFAFVEFEDPRD 274 +Y+ N D+ + ++DLF K+G + + + + GF FV FE D Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243 Score = 31.2 bits (69), Expect = 0.72 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +2 Query: 125 TIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFEDPRD 274 ++YVG+L D+ E + + F G I+ I + + R G+A+V F+ P D Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 30.8 bits (68), Expect = 0.94 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPP--------GFAFVEF 259 S + V NLP + +++V +LF YG++ + L P GFAF+EF Sbjct: 639 STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEF 693
>MLO3_SCHPO (Q09330) Protein mlo3| Length = 199 Score = 30.8 bits (68), Expect = 0.94 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYK-YGRIVEIDLKVPP--RPPGFAFVEFEDPRD 274 I V NLP D+ E +V++LF K G + L P R G A + F P D Sbjct: 57 IIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGD 108
>RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B"| Length = 111 Score = 30.8 bits (68), Expect = 0.94 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +2 Query: 125 TIYVGNLPGDIREREVED----LFYKYGRIVEIDLKVPPRPPGFAFVEFEDP 268 T+YV NL I + ++ LF YG +V+I P+ G A V F DP Sbjct: 5 TLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDP 56
>LAMA2_MOUSE (Q60675) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin| heavy chain) Length = 3106 Score = 30.8 bits (68), Expect = 0.94 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = -3 Query: 199 PSILVEQILHLPLPDIPWEVPN-VNGPAPAPTHPSLLTATSE 77 P+ ++ Q +P P P+ VP V+GP A + P+LLT + + Sbjct: 2720 PAEVIVQPQSVPTPAFPFPVPTMVHGPCVAESEPALLTGSKQ 2761
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 30.8 bits (68), Expect = 0.94 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRI--VEIDLKVPPRPPGFAFVEF 259 S I + NLP + +++ +LF +G++ V + K GFAFVEF Sbjct: 716 SSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEF 764
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 30.8 bits (68), Expect = 0.94 Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 ++++++GN+ + E+E+ F G+IV+ + K + FA++EF+D Sbjct: 100 AKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDD 151
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 30.8 bits (68), Expect = 0.94 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 128 IYVGNLPGDIREREVEDLFYKYGRIVEIDL 217 I+VGNL + E+ LF +YG+I E D+ Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDI 33 Score = 28.9 bits (63), Expect = 3.6 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRD 274 S ++VGN+ +E+ F +YG +VE D+ +AFV E D Sbjct: 77 STKLHVGNISSSCTNQELRAKFEEYGPVVECDI-----VKDYAFVHMERVED 123
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 30.8 bits (68), Expect = 0.94 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +2 Query: 119 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKV---PPRPPGFAFVEFEDPRD 274 SR I V L + + +V +LF KYG I I + + R GF F+ FE D Sbjct: 96 SRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSD 150
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 30.8 bits (68), Expect = 0.94 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEF 259 RT++V L + RE+ D F + G + + + K+ R G A+VEF Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Frame = +2 Query: 122 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDL---KVPPRPPGFAFVEFED 265 + ++VG L GD+ E ++ + F ++G + + ++ K + GF FV F++ Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQN 148 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,725,145 Number of Sequences: 219361 Number of extensions: 646745 Number of successful extensions: 2768 Number of sequences better than 10.0: 335 Number of HSP's better than 10.0 without gapping: 2515 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2708 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
