ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast69e02 |
|---|---|
| Clone Library Name | barley_pub |
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 55.8 bits (133), Expect = 2e-08 Identities = 27/42 (64%), Positives = 32/42 (76%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 DTT TK+FVGGL + T LR++FE +GDI EAVVITDR T Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT 48
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 55.8 bits (133), Expect = 2e-08 Identities = 27/42 (64%), Positives = 32/42 (76%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 DTT TK+FVGGL + T LR++FE +GDI EAVVITDR T Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT 69
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 49.7 bits (117), Expect = 2e-06 Identities = 19/37 (51%), Positives = 30/37 (81%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL+W+T EGLR++F Q+G++ E +V+ D LT Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT 57 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/41 (39%), Positives = 28/41 (68%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 T K+FVGGL+ T E ++ +FEQ+G + +A+++ D+ T Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTT 146
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 49.7 bits (117), Expect = 2e-06 Identities = 19/37 (51%), Positives = 30/37 (81%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL+W+T EGLR++F Q+G++ E +V+ D LT Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT 57 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/41 (39%), Positives = 28/41 (68%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 T K+FVGGL+ T E ++ +FEQ+G + +A+++ D+ T Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTT 146
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 49.7 bits (117), Expect = 2e-06 Identities = 19/37 (51%), Positives = 30/37 (81%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL+W+T EGLR++F Q+G++ E +V+ D LT Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT 57 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/41 (41%), Positives = 29/41 (70%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 T K+FVGGL+ T E ++Q+FEQ+G + +A+++ D+ T Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTT 146
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 47.0 bits (110), Expect = 1e-05 Identities = 18/37 (48%), Positives = 27/37 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL W T E LR +F QYG++++ V++ D+ T Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTT 47 Score = 36.6 bits (83), Expect = 0.016 Identities = 25/92 (27%), Positives = 38/92 (41%) Frame = +2 Query: 71 NRARNLVHRGLARSPSTEAGFLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKV 250 +R L R + P T G TR K G + G R + K+ Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGP--------------RSDSSKSNKI 115 Query: 251 FVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 FVGG+ LR++F+++G + E V+I D Sbjct: 116 FVGGIPHNCGETELREYFKKFGVVTEVVMIYD 147
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 47.0 bits (110), Expect = 1e-05 Identities = 18/37 (48%), Positives = 27/37 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL W T E LR +F QYG++++ V++ D+ T Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTT 47 Score = 37.0 bits (84), Expect = 0.012 Identities = 25/92 (27%), Positives = 39/92 (42%) Frame = +2 Query: 71 NRARNLVHRGLARSPSTEAGFLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKV 250 +R L R + P T G TR K G + G R ++ K+ Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGP--------------RSDNSKSNKI 115 Query: 251 FVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 FVGG+ LR++F+++G + E V+I D Sbjct: 116 FVGGIPHNCGETELREYFKKFGVVTEVVMIYD 147
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 47.0 bits (110), Expect = 1e-05 Identities = 18/37 (48%), Positives = 27/37 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL W T E LR +F QYG++++ V++ D+ T Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTT 47 Score = 30.8 bits (68), Expect = 0.85 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 R ++ K+FVGG+ L+++F ++G + E V+I D Sbjct: 107 RTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYD 148
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 46.2 bits (108), Expect = 2e-05 Identities = 21/37 (56%), Positives = 26/37 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 + FVGGLAW T +E L F YG+IL++ VITDR T Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRET 45
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 45.8 bits (107), Expect = 3e-05 Identities = 19/37 (51%), Positives = 28/37 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL + T E L+QHFEQ+G+I++ VV+ D T Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKT 54 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 T K+FVGG+ E LR +F+QYG ++ A ++ D+ T Sbjct: 106 TVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKET 145
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 45.4 bits (106), Expect = 3e-05 Identities = 18/34 (52%), Positives = 27/34 (79%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+F+GGL++ET E LR+HFEQ+G + + VV+ D Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRD 48 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/38 (47%), Positives = 26/38 (68%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T + LR++FEQYG I ++TDR Sbjct: 103 TVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDR 140
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 45.4 bits (106), Expect = 3e-05 Identities = 20/37 (54%), Positives = 25/37 (67%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 + FVGGLAW T E L Q F Q+GDI ++ +I DR T Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRET 43
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 45.1 bits (105), Expect = 4e-05 Identities = 19/38 (50%), Positives = 26/38 (68%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 TK+F+GGL+W T LR F +GD+++A VI DR T Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET 72
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/37 (48%), Positives = 28/37 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL++ET + LR+HFEQ+G + + VV+ D T Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQT 64 Score = 31.6 bits (70), Expect = 0.50 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR + E YG I V+ DR Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDR 153
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/34 (52%), Positives = 26/34 (76%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+F+GGL++ET E LR HFEQ+G + + VV+ D Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD 47 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/38 (47%), Positives = 24/38 (63%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR +FEQYG I ++TDR Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 139
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/34 (52%), Positives = 26/34 (76%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+F+GGL++ET E LR HFEQ+G + + VV+ D Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD 47 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/38 (47%), Positives = 24/38 (63%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR +FEQYG I ++TDR Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 139
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/34 (52%), Positives = 26/34 (76%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+F+GGL++ET E LR HFEQ+G + + VV+ D Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD 47 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/38 (47%), Positives = 24/38 (63%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR +FEQYG I ++TDR Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 139
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/34 (52%), Positives = 26/34 (76%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+F+GGL++ET E LR HFEQ+G + + VV+ D Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD 47 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/38 (47%), Positives = 24/38 (63%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR +FEQYG I ++TDR Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 139
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/34 (52%), Positives = 26/34 (76%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+F+GGL++ET E LR HFEQ+G + + VV+ D Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD 47 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/38 (47%), Positives = 24/38 (63%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR +FEQYG I ++TDR Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 139
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/37 (48%), Positives = 28/37 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL++ET + LR+HFEQ+G + + VV+ D T Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQT 64 Score = 33.9 bits (76), Expect = 0.10 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR +FE YG I V+ DR Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDR 153
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 43.9 bits (102), Expect = 1e-04 Identities = 17/35 (48%), Positives = 26/35 (74%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 + FVGGLAW T E L++ F Q+GD++++ +I DR Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDR 41
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 43.5 bits (101), Expect = 1e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 + FVGGLAW T L F QYGD++++ +I DR T Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRET 45
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 43.5 bits (101), Expect = 1e-04 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 + FVGGLAW T +E L Q F +G ++++ VITDR T Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRET 45
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 43.1 bits (100), Expect = 2e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 + FVGGLAW T L F QYG++L++ +I DR T Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRET 45
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 43.1 bits (100), Expect = 2e-04 Identities = 17/37 (45%), Positives = 28/37 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL++ET + LR+HFE++G + + VV+ D T Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQT 72 Score = 35.8 bits (81), Expect = 0.027 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR +FE+YG I V+ DR Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDR 161
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 43.1 bits (100), Expect = 2e-04 Identities = 17/37 (45%), Positives = 28/37 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL++ET + LR+HFE++G + + VV+ D T Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQT 72 Score = 35.8 bits (81), Expect = 0.027 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR +FE+YG I V+ DR Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDR 161
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 43.1 bits (100), Expect = 2e-04 Identities = 17/37 (45%), Positives = 28/37 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL++ET + LR+HFE++G + + VV+ D T Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQT 72 Score = 35.8 bits (81), Expect = 0.027 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR +FE+YG I V+ DR Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDR 161
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 42.7 bits (99), Expect = 2e-04 Identities = 17/32 (53%), Positives = 26/32 (81%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVI 340 K+FVGGL+WET E L ++F ++GDI++ VV+ Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVM 39 Score = 32.0 bits (71), Expect = 0.38 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 KVF+GGL LR F +YG + E V++ D+ Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQ 131
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 42.7 bits (99), Expect = 2e-04 Identities = 20/37 (54%), Positives = 25/37 (67%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL+WET + LR HF +YG+I V TD T Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQT 93 Score = 33.1 bits (74), Expect = 0.17 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 K+FVGGL E E ++ +F Q+G+I+E + D+ Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDK 171
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 42.7 bits (99), Expect = 2e-04 Identities = 16/37 (43%), Positives = 27/37 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL+W+T + LR +F ++G+I E +V+ D T Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTT 58 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/41 (41%), Positives = 29/41 (70%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 T K+FVGGL+ T E ++Q+FEQ+G + +A+++ D+ T Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTT 147
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 42.7 bits (99), Expect = 2e-04 Identities = 16/37 (43%), Positives = 27/37 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL+W+T + LR +F ++G+I E +V+ D T Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTT 58 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/41 (41%), Positives = 29/41 (70%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 T K+FVGGL+ T E ++Q+FEQ+G + +A+++ D+ T Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTT 147
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 42.7 bits (99), Expect = 2e-04 Identities = 17/37 (45%), Positives = 28/37 (75%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL + T +GL+ HFE++G+I++ VV+ D T Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKT 61 Score = 34.3 bits (77), Expect = 0.077 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 T K+FVGGL + E LR++F+ +G I+ +++D+ T Sbjct: 113 TVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDT 152
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 42.0 bits (97), Expect = 4e-04 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL+++T + L Q F +YG I E VV+ DR T Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRET 43
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 42.0 bits (97), Expect = 4e-04 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL+++T + L Q F +YG I E VV+ DR T Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRET 43
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 42.0 bits (97), Expect = 4e-04 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL+++T + L Q F +YG I E VV+ DR T Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRET 43
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 42.0 bits (97), Expect = 4e-04 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL+++T + L Q F +YG I E VV+ DR T Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRET 43
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 42.0 bits (97), Expect = 4e-04 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL+++T + L Q F +YG I E VV+ DR T Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRET 43
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 41.6 bits (96), Expect = 5e-04 Identities = 17/37 (45%), Positives = 27/37 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL + T E L+ HFE++G+I++ VV+ D T Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRT 68
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 41.6 bits (96), Expect = 5e-04 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 R+G ++FVGG+ ++T LR+ F QYG + E ++ DR Sbjct: 26 RYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR 68
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 41.6 bits (96), Expect = 5e-04 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 R+G ++FVGG+ ++T LR+ F QYG + E ++ DR Sbjct: 26 RYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR 68
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 41.6 bits (96), Expect = 5e-04 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 R+G ++FVGG+ ++T LR+ F QYG + E ++ DR Sbjct: 26 RYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR 68
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 41.2 bits (95), Expect = 6e-04 Identities = 16/34 (47%), Positives = 26/34 (76%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+F+GGL++ET E LR ++EQ+G + + VV+ D Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD 55 Score = 38.1 bits (87), Expect = 0.005 Identities = 18/38 (47%), Positives = 24/38 (63%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR +FE+YG I +ITDR Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDR 147
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 41.2 bits (95), Expect = 6e-04 Identities = 16/34 (47%), Positives = 26/34 (76%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+F+GGL++ET E LR ++EQ+G + + VV+ D Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRD 43 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR++FE+YG I +ITD+ Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDK 135
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 41.2 bits (95), Expect = 6e-04 Identities = 16/34 (47%), Positives = 26/34 (76%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+F+GGL++ET E LR ++EQ+G + + VV+ D Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD 43 Score = 38.1 bits (87), Expect = 0.005 Identities = 18/38 (47%), Positives = 24/38 (63%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR +FE+YG I +ITDR Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDR 135
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 40.4 bits (93), Expect = 0.001 Identities = 16/34 (47%), Positives = 25/34 (73%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+F+GGL++ET E LR +EQ+G + + VV+ D Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRD 43 Score = 38.9 bits (89), Expect = 0.003 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T K+FVGG+ +T LR++FE+YG I +ITD+ Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDK 135
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/37 (48%), Positives = 23/37 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL + T + L HF +G I E VV+ DR T Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRET 43
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 40.4 bits (93), Expect = 0.001 Identities = 13/37 (35%), Positives = 27/37 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL+W+T + L+ +F ++GD+++ + D +T Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPIT 132 Score = 33.5 bits (75), Expect = 0.13 Identities = 12/26 (46%), Positives = 21/26 (80%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDI 322 K+FVGGL+ +TP E +R++F +G++ Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEV 206
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/37 (48%), Positives = 23/37 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL + T + L HF +G I E VV+ DR T Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRET 43
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 40.0 bits (92), Expect = 0.001 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 + FVGGLAW T L F Q+G+++++ +I DR T Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRET 45
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 40.0 bits (92), Expect = 0.001 Identities = 16/37 (43%), Positives = 25/37 (67%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 + FVGGLAW T L + F Q+G+++++ +I DR T Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRET 43
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/37 (51%), Positives = 25/37 (67%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL +ET + L Q F +YG I E VV+ DR T Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRET 42
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 39.3 bits (90), Expect = 0.002 Identities = 14/37 (37%), Positives = 25/37 (67%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL W+T + LR++F +YG + + ++ D T Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT 196 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGG+ + + + F Q+G I++A ++ D+ T Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT 280
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 38.9 bits (89), Expect = 0.003 Identities = 12/37 (32%), Positives = 27/37 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL+W+T + L+ +F ++G++++ + D +T Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT 134 Score = 33.5 bits (75), Expect = 0.13 Identities = 12/26 (46%), Positives = 21/26 (80%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDI 322 K+FVGGL+ +TP E +R++F +G++ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEV 208
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 38.9 bits (89), Expect = 0.003 Identities = 12/37 (32%), Positives = 27/37 (72%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL+W+T + L+ +F ++G++++ + D +T Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT 134 Score = 33.5 bits (75), Expect = 0.13 Identities = 12/26 (46%), Positives = 21/26 (80%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDI 322 K+FVGGL+ +TP E +R++F +G++ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEV 208
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 38.9 bits (89), Expect = 0.003 Identities = 19/81 (23%), Positives = 39/81 (48%) Frame = +2 Query: 104 ARSPSTEAGFLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKVFVGGLAWETPS 283 A +P+ AG +T + +G + G + K+FVGGL+W+T Sbjct: 36 AAAPAASAGSGGGTTTAPSGNQNGAEGDQINASK-------NEEDAGKMFVGGLSWDTSK 88 Query: 284 EGLRQHFEQYGDILEAVVITD 346 + L+ +F ++G++++ + D Sbjct: 89 KDLKDYFTKFGEVVDCTIKMD 109 Score = 31.6 bits (70), Expect = 0.50 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDI 322 K+FVGGL E E +R++F Q+G+I Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI 185
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL +T GLR HFE +G + + VV+ + T Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQT 44 Score = 33.5 bits (75), Expect = 0.13 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 K+FVGGL + L +HF Q+G + +A +I D+ Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADK 133
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 37.7 bits (86), Expect = 0.007 Identities = 12/34 (35%), Positives = 25/34 (73%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+FVGGL+W+T + L+ +F ++G++++ + D Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD 102 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/27 (48%), Positives = 22/27 (81%), Gaps = 1/27 (3%) Frame = +2 Query: 245 KVFVGGLAWETPS-EGLRQHFEQYGDI 322 K+FVGGL E+P+ E +R++F ++G+I Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEI 179
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 36.6 bits (83), Expect = 0.016 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = +2 Query: 230 DTTQT-KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 D+ +T VFVG L+W + L Q FE+YG I+ A VI D Sbjct: 258 DSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMD 297
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 36.2 bits (82), Expect = 0.020 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 G VFVGG+ +R +FEQYG + E +ITDR Sbjct: 31 GKIMPNTVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR 71
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 35.8 bits (81), Expect = 0.027 Identities = 15/41 (36%), Positives = 26/41 (63%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 ++ K+FVG + E +R +FEQ+G++LE +I D+ T Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 35.4 bits (80), Expect = 0.035 Identities = 14/37 (37%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 +V+VG L W+ + L Q F ++G ++ A V++DR T Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRET 186
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 35.4 bits (80), Expect = 0.035 Identities = 15/37 (40%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 +V+VG L W+ + L Q F ++G ++EA V+ DR T Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRET 281 Score = 32.3 bits (72), Expect = 0.29 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = +2 Query: 239 QTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 + K+FVG LA++ S+ L FEQ G + A VI +R T Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRET 187
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 35.0 bits (79), Expect = 0.045 Identities = 15/37 (40%), Positives = 25/37 (67%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL E LR++F Q+G+++ ++TD+ T Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTT 160 Score = 34.3 bits (77), Expect = 0.077 Identities = 15/37 (40%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGLA T E L+ + Q+G +++ VV+ D T Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAAT 69
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 35.0 bits (79), Expect = 0.045 Identities = 14/37 (37%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVGGL T + +R+ + Q+G+I + +V+ D T Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTT 60
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 34.7 bits (78), Expect = 0.059 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL ET + L F +YG I+E +++ DR T Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRET 45
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 34.3 bits (77), Expect = 0.077 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL ET + L F +YG I+E +++ DR T Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRET 45
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 33.9 bits (76), Expect = 0.10 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+F+GGL ET + L F +YG I+E +++ DR T Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRET 45
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 33.5 bits (75), Expect = 0.13 Identities = 12/26 (46%), Positives = 21/26 (80%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDI 322 K+FVGGL+ +TP E +R++F +G++ Sbjct: 173 KIFVGGLSPDTPEEKIREYFGGFGEV 198
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 33.5 bits (75), Expect = 0.13 Identities = 25/84 (29%), Positives = 35/84 (41%) Frame = +2 Query: 98 GLARSPSTEAGFLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKVFVGGLAWET 277 G +R P + G S+ S GG GG G + +V+VG L+W Sbjct: 176 GFSRGPRSSFG----SSGSGYGGGGGS----------------GAGSGNRVYVGNLSWGV 215 Query: 278 PSEGLRQHFEQYGDILEAVVITDR 349 L F + G ++EA VI DR Sbjct: 216 DDMALESLFSEQGKVVEARVIYDR 239
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 33.5 bits (75), Expect = 0.13 Identities = 12/26 (46%), Positives = 21/26 (80%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDI 322 K+FVGGL+ +TP E +R++F +G++ Sbjct: 35 KIFVGGLSPDTPEEKIREYFGGFGEV 60
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 33.1 bits (74), Expect = 0.17 Identities = 22/90 (24%), Positives = 33/90 (36%) Frame = +2 Query: 80 RNLVHRGLARSPSTEAGFLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKVFVG 259 R+ R R S GF +G RG + +FVG Sbjct: 88 RSFRSRHNTRDDSRRGGF------GSSGARGDYGPLLARELDSTYEEKVNRNYSNSIFVG 141 Query: 260 GLAWETPSEGLRQHFEQYGDILEAVVITDR 349 L +++ E L + F Q G ++ A +IT R Sbjct: 142 NLTYDSTPEDLTEFFSQIGKVVRADIITSR 171
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 33.1 bits (74), Expect = 0.17 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVG L ++ SEGL Q F+Q G + A VI +R T Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRET 134 Score = 31.2 bits (69), Expect = 0.65 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 +++VG + W+ L Q F ++G ++ A V+ DR Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDR 226
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 33.1 bits (74), Expect = 0.17 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 +FVG L+W E L++ FE G ++ A VI +R T Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGT 205
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 33.1 bits (74), Expect = 0.17 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Frame = +2 Query: 113 PSTEAGFLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTT----QTKVFVGGLAWETP 280 P G +RS GGRGG R D T + +FV L ++ Sbjct: 75 PPRRGGRGRGGSRSFRGGRGGGRGRTLGPIVERDLERQFDATKRNFENSIFVRNLTFDCT 134 Query: 281 SEGLRQHFEQYGDILEAVVITDR 349 E L++ F G+++EA +IT + Sbjct: 135 PEDLKELFGTVGEVVEADIITSK 157
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 33.1 bits (74), Expect = 0.17 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 + +V+VG LAW + L F + G +++A V+ DR Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 223 Score = 30.8 bits (68), Expect = 0.85 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVG L + S L + FE+ G++ VI D+LT Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLT 124
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 33.1 bits (74), Expect = 0.17 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 + +V+VG LAW + L F + G +++A V+ DR Sbjct: 192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 229 Score = 30.8 bits (68), Expect = 0.85 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVG L + S L + FE+ G++ VI D+LT Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLT 124
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 33.1 bits (74), Expect = 0.17 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 ++G ++FVGG++ +T L + F YG + +I DR Sbjct: 26 KYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR 68
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 33.1 bits (74), Expect = 0.17 Identities = 14/40 (35%), Positives = 26/40 (65%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVI 340 R +T TK+FVG L +T + +R+ F++YG ++E ++ Sbjct: 79 RAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV 118 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVI 340 K+F+G L +T + LR FE+YG ++E V+ Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVV 39
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 32.7 bits (73), Expect = 0.22 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 T TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 76 TSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD 112 Score = 31.6 bits (70), Expect = 0.50 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVI 340 K+FVG L+ T +E +R F QYG I E ++ Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV 34
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 32.7 bits (73), Expect = 0.22 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVI 340 K+F+G L E + +R FEQYG +LE +I Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII 34 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 32.7 bits (73), Expect = 0.22 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVI 340 K+F+G L E + +R FEQYG +LE +I Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII 34 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 32.7 bits (73), Expect = 0.22 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVG L ++ SEGL + FEQ G + A VI +R T Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDT 173 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 +++VG + W L Q F ++G ++ A V+ DR T Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRET 267
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 32.7 bits (73), Expect = 0.22 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVI 340 K+F+G L E + +R FEQYG +LE +I Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII 34 Score = 32.0 bits (71), Expect = 0.38 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 T TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 32.7 bits (73), Expect = 0.22 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 + +V+VG L+W L++ F + G++++A V+ DR Sbjct: 205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDR 242 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 K+FVG L + S L FE+ G++ VI D+LT Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLT 124
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 32.7 bits (73), Expect = 0.22 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 + +V+VG L+W L++ F + G++++A V+ DR Sbjct: 206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDR 243
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 32.7 bits (73), Expect = 0.22 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVI 340 K+F+G L E + +R FEQYG +LE +I Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII 34 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 32.7 bits (73), Expect = 0.22 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVI 340 K+F+G L E + +R FEQYG +LE +I Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII 34 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 32.7 bits (73), Expect = 0.22 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVI 340 K+F+G L E + +R FEQYG +LE +I Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII 34 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 32.7 bits (73), Expect = 0.22 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVI 340 K+F+G L E + +R FEQYG +LE +I Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII 34 Score = 32.0 bits (71), Expect = 0.38 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = +2 Query: 236 TQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 T TK+ VG ++ ++ LR FE+YG ++E ++ D Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 32.7 bits (73), Expect = 0.22 Identities = 23/77 (29%), Positives = 32/77 (41%) Frame = +2 Query: 119 TEAGFLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKVFVGGLAWETPSEGLRQ 298 +E G S RS GG GG G + +++VG L+W L Sbjct: 220 SERGGGYGSQRS-GGGYGGSQRSSYGSGSGSGS---GSGSGNRLYVGNLSWGVDDMALEN 275 Query: 299 HFEQYGDILEAVVITDR 349 F + G ++EA VI DR Sbjct: 276 LFNEQGKVVEARVIYDR 292
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 32.3 bits (72), Expect = 0.29 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 G T +FVGG+ + +R+ F +YG + E +IT R Sbjct: 42 GKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYR 82
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 32.0 bits (71), Expect = 0.38 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 GD +T +FV L +E+ +++ FE YG I ++TD+LT Sbjct: 134 GDPYKT-LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLT 175
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 32.0 bits (71), Expect = 0.38 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 G VFVGG+ +R F +YG + E +ITDR Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 75
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 32.0 bits (71), Expect = 0.38 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 G VFVGG+ +R F +YG + E +ITDR Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 75
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 32.0 bits (71), Expect = 0.38 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 G VFVGG+ +R F +YG + E +ITDR Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 75
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 32.0 bits (71), Expect = 0.38 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDIL 325 +F DT + VFVGGL+ E L+ F+ +G+I+ Sbjct: 296 QFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIV 330
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 31.6 bits (70), Expect = 0.50 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 VFVG L +E E L +HFE GDI +I D T Sbjct: 361 VFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKT 396
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 31.2 bits (69), Expect = 0.65 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 G VFVGG+ +R F +YG + E +ITDR Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR 75
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 31.2 bits (69), Expect = 0.65 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 K+F+GGL ET + L+ F ++G I E ++I DR Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR 43
>NRG1_CHICK (Q05199) Pro-neuregulin-1, membrane-bound isoform precursor| (Pro-NRG1) [Contains: Neuregulin-1 (Acetylcholine receptor-inducing activity) (ARIA)] Length = 602 Score = 31.2 bits (69), Expect = 0.65 Identities = 19/60 (31%), Positives = 24/60 (40%) Frame = -3 Query: 345 SVMTTASRMSPYCSKCCRSPSDGVSHASPPTNTLVCVVSPNRXXXXXXXXXXXXAITPPR 166 S MTT +RMSP SP S SPP ++L + +TPPR Sbjct: 389 SAMTTPARMSPVDFHTPTSPKSPPSEMSPPVSSLTISIPSVAVSPFMDEERPLLLVTPPR 448
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 31.2 bits (69), Expect = 0.65 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 D K+FVG + + LR+ FEQYG + E V+ DR Sbjct: 12 DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDR 51
>VMSA_HBVYW (P03138) Major surface antigen precursor| Length = 388 Score = 30.8 bits (68), Expect = 0.85 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = -3 Query: 348 RSVMTTASRMSPYCSKCCRSPSDG 277 R+ MTTA S Y S CC PSDG Sbjct: 284 RTCMTTAQGTSMYPSCCCTKPSDG 307
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 T T V+V LA T + L+ F +YG I AVV+ D Sbjct: 212 TKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD 249
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 30.8 bits (68), Expect = 0.85 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVV 337 KVFVG + + LR+ F QYGD+++ + Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFI 222
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDIL 325 D T T VFVGGL +T LR F+ +G IL Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPIL 387
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 30.8 bits (68), Expect = 0.85 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 D K+FVG + + LR+ FEQYG + E ++ DR Sbjct: 12 DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDR 51
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 +FVG L +E E L +HFE GDI +I D T Sbjct: 281 IFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKT 316
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T V+V L E + L++ F +YGDI AVV+ D+ Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ 260
>GLTB_MAIZE (P23225) Ferredoxin-dependent glutamate synthase, chloroplast| precursor (EC 1.4.7.1) (Fd-GOGAT) Length = 1616 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = -3 Query: 174 PPRPPALLRVDATRKPASVEGDLASPR*TRLR-------ARLNWLVNSGAPPS 37 PP P ALL + P + G A+ R +RLR AR +W+V S A S Sbjct: 9 PPTPAALLPLPRAAPPLLLAGRAAAARRSRLRARGPSAAARRSWVVASAASSS 61
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 K++V L+W S+GLR F + A VI DR Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDR 252
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/75 (21%), Positives = 28/75 (37%) Frame = +2 Query: 131 FLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKVFVGGLAWETPSEGLRQHFEQ 310 F S ++A R G + VFVG L ++ + +HF Sbjct: 250 FKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLD 309 Query: 311 YGDILEAVVITDRLT 355 G I+ ++ D++T Sbjct: 310 CGSIMAVRIVRDKMT 324
>MPS1_BRARE (Q8AYG3) Mitotic checkpoint serine/threonine-protein kinase Mps1| (EC 2.7.12.2) (Monopolar spindle 1) (Nightcap protein) Length = 983 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -3 Query: 345 SVMTTASRMSPYCSKCCRSPSDGVSHASPPTNT 247 SV TA +M P C +P GVS+ PPT T Sbjct: 607 SVPATAQKMCPTALPC--TPQSGVSYIQPPTQT 637
>NRG1_HUMAN (Q02297) Pro-neuregulin-1, membrane-bound isoform precursor| (Pro-NRG1) [Contains: Neuregulin-1 (Neu differentiation factor) (Heregulin) (HRG) (Breast cancer cell differentiation factor p45) (Acetylcholine receptor-inducing activity) (ARIA) (Se Length = 639 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/60 (30%), Positives = 24/60 (40%) Frame = -3 Query: 345 SVMTTASRMSPYCSKCCRSPSDGVSHASPPTNTLVCVVSPNRXXXXXXXXXXXXAITPPR 166 S MTT +RMSP SP S SPP +++ + +TPPR Sbjct: 425 SAMTTPARMSPVDFHTPSSPKSPPSEMSPPVSSMTVSMPSMAVSPFMEEERPLLLVTPPR 484
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 224 FGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDIL 325 F D T VF+GGL+ + LR +F+ +G I+ Sbjct: 307 FTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIV 340
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVIT 343 +FVG L+++ + LR+HF+ GDI++ + T Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMAT 272
>NRG1_RAT (P43322) Pro-neuregulin-1, membrane-bound isoform precursor| (Pro-NRG1) [Contains: Neuregulin-1 (Neu differentiation factor) (Heregulin) (HRG) (Acetylcholine receptor-inducing activity) (ARIA) (Sensory and motor neuron-derived factor) (Glial grow Length = 662 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/60 (30%), Positives = 24/60 (40%) Frame = -3 Query: 345 SVMTTASRMSPYCSKCCRSPSDGVSHASPPTNTLVCVVSPNRXXXXXXXXXXXXAITPPR 166 S MTT +RMSP SP S SPP +++ + +TPPR Sbjct: 448 SAMTTPARMSPVDFHTPSSPKSPPSEMSPPVSSMTVSMPSVAVSPFVEEERPLLLVTPPR 507
>K1C14_MOUSE (Q61781) Keratin, type I cytoskeletal 14 (Cytokeratin-14) (CK-14)| (Keratin-14) (K14) Length = 484 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +2 Query: 2 ATQSTXXXXXXTEGGAPELTSQFNRARNLVHRGLARSPSTEAGFLVASTRSKAGGRGGV 178 AT S + G+ + +R +++ G R+PST G V S+R +GG G+ Sbjct: 2 ATCSRQFTSSSSMKGSCGIGGGSSRMSSILAGGSCRAPSTYGGMSVTSSRFSSGGACGI 60
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 +FVGGL +E + F QYG+I+ ++ D+ T Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
>NRG1_XENLA (O93383) Pro-neuregulin-1, membrane-bound isoform precursor| (Pro-NRG1) [Contains: Neuregulin-1] Length = 677 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/60 (31%), Positives = 24/60 (40%) Frame = -3 Query: 345 SVMTTASRMSPYCSKCCRSPSDGVSHASPPTNTLVCVVSPNRXXXXXXXXXXXXAITPPR 166 S MTT +RMSP K SP SPP ++L V ++PPR Sbjct: 446 SAMTTPARMSPVEFKTPISPKSPCLETSPPESSLAVSVPSVAVSPFIEEERPLLLVSPPR 505
>SET1_SCHPO (Q9Y7R4) Histone-lysine N-methyltransferase, H3 lysine-4 specific| (EC 2.1.1.43) (Set1 complex component set1) (Set1C component set1) (COMPASS component set1) (SET domain-containing protein 1) (Spset1) Length = 920 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +2 Query: 227 GDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILE 328 G T+VFV ++ SE LR HF+ +G++ + Sbjct: 89 GPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFD 122
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/71 (23%), Positives = 26/71 (36%) Frame = +2 Query: 143 STRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDI 322 S +KA R G + VFVG L ++ L +HF G I Sbjct: 258 SAAAKALQRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYKIEDSALEEHFLDCGSI 317 Query: 323 LEAVVITDRLT 355 + ++ + LT Sbjct: 318 VAVRIVRNPLT 328
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+FVG ++ S+ LR FE+ G ++E V+ D Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+FVG ++ S+ LR FE+ G ++E V+ D Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+FVG ++ S+ LR FE+ G ++E V+ D Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 K+FVG ++ S+ LR FE+ G ++E V+ D Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVIT 343 +FVG L +ET L++HF Q G I ++T Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMT 261
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILE 328 +++FV LA+ T SE L HF YG I E Sbjct: 221 SRLFVRNLAFITTSESLSSHFSTYGRIDE 249
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQYGDILEAVV 337 KVFVG + +E L+Q F QYG++++ + Sbjct: 192 KVFVGRCTEDMTAEELQQFFCQYGEVVDVFI 222
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/39 (43%), Positives = 19/39 (48%) Frame = +1 Query: 19 KSARAH*GRRAGINQPVQPCAQPGSPRASKIALHGGRLP 135 K A AH G + + V QPGSP SK HGG P Sbjct: 4544 KGAHAHSGPTSAGSSSVPSPGQPGSPSVSK-KKHGGSKP 4581
>CPB3_CAERE (Q6E3D4) Cytoplasmic polyadenylation element-binding protein 3| Length = 766 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYG 316 T K+FVGG+ W+ L+ F ++G Sbjct: 305 TFSRKIFVGGVPWDITEAALKDSFGEFG 332
>CPB3_CAEJA (Q6E3D2) Cytoplasmic polyadenylation element-binding protein 3| Length = 734 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYG 316 T K+FVGG+ W+ L+ F ++G Sbjct: 289 TFSRKIFVGGVPWDITEAALKDSFGEFG 316
>CPB3_CAEBR (Q6E3D5) Cytoplasmic polyadenylation element-binding protein 3| Length = 753 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYG 316 T K+FVGG+ W+ L+ F ++G Sbjct: 293 TFSRKIFVGGVPWDITEAALKDSFGEFG 320
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T ++++FVG L + E +R+ FE+YG E + D+ Sbjct: 76 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK 114
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T ++++FVG L + E +R+ FE+YG E + D+ Sbjct: 71 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK 109
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T ++++FVG L + E +R+ FE+YG E + D+ Sbjct: 71 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK 109
>CPB3_CAEEL (O01835) Cytoplasmic polyadenylation element-binding protein 3| Length = 751 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYG 316 T K+FVGG+ W+ L+ F ++G Sbjct: 292 TFSRKIFVGGVPWDITEAALKDSFGEFG 319
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T ++++FVG L + E +R+ FE+YG E + D+ Sbjct: 73 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK 111
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 28.5 bits (62), Expect = 4.2 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 7/110 (6%) Frame = +2 Query: 41 GGAPELTSQFNRARNLVHRGLA-------RSPSTEAGFLVASTRSKAGGRGGVMXXXXXX 199 GG P + N +N +RG R P F+V S G Sbjct: 46 GGGPNKRNNMNMNKNFQNRGGKGGPGMGPRGPMKNEDFIVNSKLKNLAGP-------THD 98 Query: 200 XXXXXXXRFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 + + ++++G L + E L++ F YG+I EA + ++ Sbjct: 99 LPELVCEEIKFSGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEK 148
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILE 328 +F+G L + + LR HFE +G+I+E Sbjct: 658 LFIGNLEKDITAGELRSHFEAFGEIIE 684
>CT055_HUMAN (Q9BQ89) Protein C20orf55| Length = 295 Score = 28.1 bits (61), Expect = 5.5 Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 7/92 (7%) Frame = -3 Query: 351 RRSVMTTASRMSPYCSKCCRSPSDGVSHASPPTNTLVCVVSP---NRXXXXXXXXXXXXA 181 RR+V+T + R P CR P + S + VSP +R Sbjct: 82 RRTVLTPSRRALP---GPCRRPQLDLDILSSLIDLCDSPVSPAEASRTPGRAEGAGRPPP 138 Query: 180 ITPPRPP----ALLRVDATRKPASVEGDLASP 97 TPPRPP A+ RVD PAS SP Sbjct: 139 ATPPRPPPSTSAVRRVDVRPLPASPARPCPSP 170
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 VFV + ++ E L HF ++G + A+ + D+ T Sbjct: 292 VFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKST 327
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = +2 Query: 242 TKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDR 349 T + + L+++T LR+ FE+YGDI + + D+ Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK 54
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 +F+GGL +E + F QYG+I+ ++ D+ T Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
>ROAB_ARTSA (P80350) Heterogeneous nuclear ribonucleoprotein A/B (P38)| (Fragments) Length = 195 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 239 QTKVFVGGLAWETPSEGLRQHFEQYGDI 322 +TK+FVG L+WET E+YG+I Sbjct: 33 ETKLFVGALSWETT--------EKYGEI 52
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/68 (23%), Positives = 24/68 (35%) Frame = +2 Query: 152 SKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEA 331 +KA R G + VFVG L + L +HF G I+ Sbjct: 255 AKALQRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAV 314 Query: 332 VVITDRLT 355 ++ + LT Sbjct: 315 RIVRNPLT 322
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +2 Query: 221 RFGDTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 R G + ++V GL+ T + L+ F +YG ++ A V+T+ Sbjct: 400 RVGSGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTN 441
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 TT+ ++VGGLA E + L F +GDI + + D Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 40
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +2 Query: 233 TTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITD 346 TT+ ++VGGLA E + L F +GDI + + D Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 40
>FBX15_BOVIN (Q3SYW0) F-box only protein 15| Length = 466 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -3 Query: 318 SPYCSKCCRSPSDGVS 271 SP C +CC PSDG S Sbjct: 399 SPVCVRCCPGPSDGPS 414
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 239 QTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 Q VFVG L +E E L +HF G I ++ D T Sbjct: 227 QRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKT 265
>K1C16_MOUSE (Q9Z2K1) Keratin, type I cytoskeletal 16 (Cytokeratin-16) (CK-16)| (Keratin-16) (K16) Length = 468 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +2 Query: 2 ATQSTXXXXXXTEGGAPELTSQFNRARNLVHRGLARSPSTEAGFLVASTRSKAGGRGGV 178 AT S + G+ + +R +++ G R+PST G V S+R +GG G+ Sbjct: 1 ATCSRQFTSSSSMKGSCGIGGGSSRMSSILAGGSCRAPSTCGGMSVTSSRFSSGGVCGI 59
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/79 (24%), Positives = 29/79 (36%) Frame = +2 Query: 104 ARSPSTEAGFLVASTRSKAGGRGGVMXXXXXXXXXXXXXRFGDTTQTKVFVGGLAWETPS 283 + SPST+ G L GG +T ++ V + + Sbjct: 83 SNSPSTQNGSLTTE--------GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRD 134 Query: 284 EGLRQHFEQYGDILEAVVI 340 LRQ F Q+G IL+ +I Sbjct: 135 PDLRQMFGQFGKILDVEII 153
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/36 (27%), Positives = 21/36 (58%) Frame = +2 Query: 248 VFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLT 355 VF+G + + + E + +HF+ G I++ + D+ T Sbjct: 103 VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFT 138
>VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 714 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 98 GLARSPSTEAGFLVASTRSKAGGRGG 175 GL PST A A++ S GG GG Sbjct: 259 GLGNGPSTSAAAAAAASNSSGGGGGG 284
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +2 Query: 245 KVFVGGLAWETPSEGLRQHFEQY 313 ++FVGG T LR+HFE++ Sbjct: 68 RIFVGGFPTSTTETELREHFEKF 90
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 230 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDIL 325 D T VFVGGLA + L+ F+ +G IL Sbjct: 293 DPLNTTVFVGGLASNLSEKDLQVCFQPFGRIL 324 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,116,050 Number of Sequences: 219361 Number of extensions: 524219 Number of successful extensions: 2169 Number of sequences better than 10.0: 156 Number of HSP's better than 10.0 without gapping: 2054 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2169 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
