ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast69d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT008984.1| Triticum aestivum clone wdk2c.pk007.b15:fis, full... 559 e-156
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 274 2e-70
3dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic D... 274 2e-70
4dbj|AK105605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5dbj|AB004799.1| Oryza sativa mRNA for ascorbate oxidase, partial... 76 1e-10
6dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
7ref|XM_450643.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
9dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
10ref|NM_120146.3| Arabidopsis thaliana copper ion binding AT4G398... 44 0.37
11gb|BT015885.1| Arabidopsis thaliana At4g39830 gene, complete cds 44 0.37
12gb|BT015360.1| Arabidopsis thaliana At4g39830 gene, complete cds 44 0.37
13emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, ... 44 0.37
14emb|AL035708.2|ATT5J17 Arabidopsis thaliana DNA chromosome 4, BA... 44 0.37
15emb|AL022605.3|ATT19P19 Arabidopsis thaliana DNA chromosome 4, B... 44 0.37
16gb|AC159331.9| Mus musculus 10 BAC RP23-218E2 (Roswell Park Canc... 44 0.37
17emb|BX827889.1|CNS0A49W Arabidopsis thaliana Full-length cDNA Co... 44 0.37
18dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
19gb|AC153958.2| Mus musculus 10 BAC RP24-541B4 (Roswell Park Canc... 44 0.37
20gb|AC090053.5| Leishmania major strain Friedlin chromosome Unkno... 44 0.37
21gb|AY971876.1| Lycopersicon esculentum ascorbate oxidase (AO) mR... 42 1.5
22ref|XM_361698.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.5
23gb|DQ470894.1| Leptosphaeria maculans isolate AFTOL-ID 277 RNA p... 42 1.5
24gb|AC015802.21| Homo sapiens chromosome 17, clone RP11-666A8, co... 42 1.5
25gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.5
26gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.5
27gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.5
28dbj|AB083032.1| Glycine max mRNA for syringolide-induced protein... 42 1.5
29gb|AF107805.1|AF107805 Sporormiella minima DNA-dependent RNA pol... 42 1.5
30ref|XM_366417.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.8
31emb|AL354979.17| Human DNA sequence from clone RP11-10J18 on chr... 40 5.8
32emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 40 5.8
33gb|AC009695.7| Homo sapiens chromosome 8, clone RP11-130C12, com... 40 5.8
34gb|AC112217.2| Homo sapiens chromosome 3 clone CTD-2028L5, compl... 40 5.8
35gb|AC099054.2| Homo sapiens chromosome 3 clone RP11-489C3, compl... 40 5.8
36dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.8
37dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.8
38gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.8 
>gb|BT008984.1| Triticum aestivum clone wdk2c.pk007.b15:fis, full insert mRNA
           sequence
          Length = 2056

 Score =  559 bits (282), Expect = e-156
 Identities = 378/410 (92%), Gaps = 15/410 (3%)
 Strand = Plus / Plus

                                                                       
Query: 30  atccattctgccttgaggaaattgtctgaacctttcctccacttactagtcttt-----c 84
           ||||||| |||||||  |||||||| ||||||||||||||||||||||| ||||     |
Sbjct: 8   atccattttgccttggagaaattgtttgaacctttcctccacttactagcctttttcttc 67

                                                                       
Query: 85  ttcctccccattgctgccatgagggcgcctgtggcgttctttgcatggtgcgccctcctc 144
           |||||||||||||||||||||||||| |         |||||||||||||||||||||||
Sbjct: 68  ttcctccccattgctgccatgagggctc---------tctttgcatggtgcgccctcctc 118

                                                                       
Query: 145 ttggcgtgtggcggcctgctgcattgcgcggaggcggccaaggccaggcacctcaagtgg 204
           |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ttggcgtgcggcggcgtgatgcattgcgcggaggcggccaaggccaggcacctcaagtgg 178

                                                                       
Query: 205 gaggtgagccacatgttctggtcgccggactgcgaggagaaggtgctcatcggcatcaac 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gaggtgagccacatgttctggtcgccggactgcgaggagaaggtgctcatcggcatcaac 238

                                                                       
Query: 265 ggccagttccccggccccaccatccgggccaaggccggcgacaccatcgtcgtcgagctc 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ggccagttccccggccccaccatccgggccaaggccggcgacaccatcgtcgtcgagctc 298

                                                                       
Query: 325 aagaacgggctgcacaccgagggggtggtcatccactggcacggcgtcagacagattgga 384
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 299 aagaacgggctgcacaccgagggcgtcgtcatccactggcacggcgtcagacagattgga 358

                                                             
Query: 385 acaccgtgggcggatggcacggcggcgatct-ccaatgcgccatcaaccc 433
           || || |||||||| |||||||| || |||| ||| ||||||||||||||
Sbjct: 359 acgccatgggcggacggcacggccgccatctcccagtgcgccatcaaccc 408
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  274 bits (138), Expect = 2e-70
 Identities = 192/210 (91%)
 Strand = Plus / Plus

                                                                            
Query: 169      tgcgcggaggcggccaaggccaggcacctcaagtgggaggtgagccacatgttctggtcg 228
                ||||||| |||||| ||||| |||||| ||| ||||||||||||| ||||||||||||||
Sbjct: 21545604 tgcgcggcggcggcgaaggcgaggcacttcaggtgggaggtgagcaacatgttctggtcg 21545663

                                                                            
Query: 229      ccggactgcgaggagaaggtgctcatcggcatcaacggccagttccccggccccaccatc 288
                ||||||||||||||||||||| | ||||||||||| |||||||||||||| || ||||||
Sbjct: 21545664 ccggactgcgaggagaaggtggtgatcggcatcaatggccagttccccgggccgaccatc 21545723

                                                                            
Query: 289      cgggccaaggccggcgacaccatcgtcgtcgagctcaagaacgggctgcacaccgagggg 348
                || ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| 
Sbjct: 21545724 cgcgccaaggccggcgacaccatcgtcgtccacctcaagaacggcctgcacaccgagggc 21545783

                                              
Query: 349      gtggtcatccactggcacggcgtcagacag 378
                || |||||||||||||||||| ||||||||
Sbjct: 21545784 gtcgtcatccactggcacggcatcagacag 21545813



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 335      tgcacaccgagggggtggtcatccactggcacggcgtcagacag 378
                ||||||||||||| || |||||||||||||||||| ||||||||
Sbjct: 21603707 tgcacaccgagggcgtcgtcatccactggcacggcatcagacag 21603750



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 54/61 (88%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                            
Query: 374      gacagattggaacaccgtgggcggatggcacggcggcgatct-ccaatgcgccatcaacc 432
                ||||||| || ||||| |||||||||||||||||  |||||| ||| |||||||||||||
Sbjct: 21546070 gacagatcgggacaccatgggcggatggcacggcatcgatctcccagtgcgccatcaacc 21546129

                 
Query: 433      c 433
                |
Sbjct: 21546130 c 21546130



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 59       acctttcctccacttactagtcttt 83
                ||||||||||||||||||| |||||
Sbjct: 21545447 acctttcctccacttactactcttt 21545471
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>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0567G03
          Length = 196834

 Score =  274 bits (138), Expect = 2e-70
 Identities = 192/210 (91%)
 Strand = Plus / Plus

                                                                          
Query: 169    tgcgcggaggcggccaaggccaggcacctcaagtgggaggtgagccacatgttctggtcg 228
              ||||||| |||||| ||||| |||||| ||| ||||||||||||| ||||||||||||||
Sbjct: 102788 tgcgcggcggcggcgaaggcgaggcacttcaggtgggaggtgagcaacatgttctggtcg 102847

                                                                          
Query: 229    ccggactgcgaggagaaggtgctcatcggcatcaacggccagttccccggccccaccatc 288
              ||||||||||||||||||||| | ||||||||||| |||||||||||||| || ||||||
Sbjct: 102848 ccggactgcgaggagaaggtggtgatcggcatcaatggccagttccccgggccgaccatc 102907

                                                                          
Query: 289    cgggccaaggccggcgacaccatcgtcgtcgagctcaagaacgggctgcacaccgagggg 348
              || ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| 
Sbjct: 102908 cgcgccaaggccggcgacaccatcgtcgtccacctcaagaacggcctgcacaccgagggc 102967

                                            
Query: 349    gtggtcatccactggcacggcgtcagacag 378
              || |||||||||||||||||| ||||||||
Sbjct: 102968 gtcgtcatccactggcacggcatcagacag 102997



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                          
Query: 335    tgcacaccgagggggtggtcatccactggcacggcgtcagacag 378
              ||||||||||||| || |||||||||||||||||| ||||||||
Sbjct: 160891 tgcacaccgagggcgtcgtcatccactggcacggcatcagacag 160934



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 54/61 (88%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                          
Query: 374    gacagattggaacaccgtgggcggatggcacggcggcgatct-ccaatgcgccatcaacc 432
              ||||||| || ||||| |||||||||||||||||  |||||| ||| |||||||||||||
Sbjct: 103254 gacagatcgggacaccatgggcggatggcacggcatcgatctcccagtgcgccatcaacc 103313

               
Query: 433    c 433
              |
Sbjct: 103314 c 103314



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 59     acctttcctccacttactagtcttt 83
              ||||||||||||||||||| |||||
Sbjct: 102631 acctttcctccacttactactcttt 102655
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>dbj|AK105605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A11, full
           insert sequence
          Length = 2191

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                       
Query: 335 tgcacaccgagggggtggtcatccactggcacggcgtcagacagattggaacaccgtggg 394
           ||||||||||||| || |||||||||||||||||| |||||||| |||| || |||||||
Sbjct: 327 tgcacaccgagggcgtcgtcatccactggcacggcatcagacagtttggcacgccgtggg 386

                        
Query: 395 cggatggcacggc 407
           |||| || |||||
Sbjct: 387 cggacgggacggc 399
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>dbj|AB004799.1| Oryza sativa mRNA for ascorbate oxidase, partial cds
          Length = 1245

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                       
Query: 335 tgcacaccgagggggtggtcatccactggcacggcgtcagacagattggaacaccgtggg 394
           ||||||||||||| || |||||||||||||||||  |||||||| |||| || |||||||
Sbjct: 266 tgcacaccgagggcgtcgtcatccactggcacggnatcagacagtttggtacgccgtggg 325

                        
Query: 395 cggatggcacggc 407
           |||| || |||||
Sbjct: 326 cggacgggacggc 338
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>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0062E01
          Length = 161804

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                        
Query: 335  tgcacaccgagggggtggtcatccactggcacggcgtcagacag 378
            ||||||||||||| || |||||||||||||||||| ||||||||
Sbjct: 2638 tgcacaccgagggcgtcgtcatccactggcacggcatcagacag 2681
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>ref|XM_450643.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1731

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 354 catccactggcacggcgtcagacagattggaacaccgtgggcggatggcacgg 406
           |||||||||||||||| || | ||||| || || ||||||||||| |||||||
Sbjct: 240 catccactggcacggcatccggcagatcggcacgccgtgggcggacggcacgg 292
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                     
Query: 354      catccactggcacggcgtcagacagattggaacaccgtgggcggatggcacgg 406
                |||||||||||||||| || | ||||| || || ||||||||||| |||||||
Sbjct: 11981068 catccactggcacggcatccggcagatcggcacgccgtgggcggacggcacgg 11981016



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 298      gccggcgacaccatcgtcgtcg 319
                ||||||||||||||||||||||
Sbjct: 22000386 gccggcgacaccatcgtcgtcg 22000407
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>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0441A12
          Length = 185437

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                  
Query: 354   catccactggcacggcgtcagacagattggaacaccgtgggcggatggcacgg 406
             |||||||||||||||| || | ||||| || || ||||||||||| |||||||
Sbjct: 85548 catccactggcacggcatccggcagatcggcacgccgtgggcggacggcacgg 85496
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>ref|NM_120146.3| Arabidopsis thaliana copper ion binding AT4G39830 mRNA, complete
           cds
          Length = 2082

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 304 gacaccatcgtcgtcgagctcaagaa 329
           ||||||||||| ||||||||||||||
Sbjct: 394 gacaccatcgttgtcgagctcaagaa 419
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>gb|BT015885.1| Arabidopsis thaliana At4g39830 gene, complete cds
          Length = 1749

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 304 gacaccatcgtcgtcgagctcaagaa 329
           ||||||||||| ||||||||||||||
Sbjct: 220 gacaccatcgttgtcgagctcaagaa 245
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>gb|BT015360.1| Arabidopsis thaliana At4g39830 gene, complete cds
          Length = 1915

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 304 gacaccatcgtcgtcgagctcaagaa 329
           ||||||||||| ||||||||||||||
Sbjct: 383 gacaccatcgttgtcgagctcaagaa 408
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>emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 92
          Length = 112067

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 304  gacaccatcgtcgtcgagctcaagaa 329
            ||||||||||| ||||||||||||||
Sbjct: 6341 gacaccatcgttgtcgagctcaagaa 6366
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>emb|AL035708.2|ATT5J17 Arabidopsis thaliana DNA chromosome 4, BAC clone T5J17 (ESSA project)
          Length = 118267

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 304   gacaccatcgtcgtcgagctcaagaa 329
             ||||||||||| ||||||||||||||
Sbjct: 16908 gacaccatcgttgtcgagctcaagaa 16933
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>emb|AL022605.3|ATT19P19 Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSA project)
          Length = 88343

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 304   gacaccatcgtcgtcgagctcaagaa 329
             ||||||||||| ||||||||||||||
Sbjct: 82462 gacaccatcgttgtcgagctcaagaa 82487
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>gb|AC159331.9| Mus musculus 10 BAC RP23-218E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 186300

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 68    ccacttactagtctttcttcct 89
             ||||||||||||||||||||||
Sbjct: 18205 ccacttactagtctttcttcct 18184
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>emb|BX827889.1|CNS0A49W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH31ZH07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1943

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 304 gacaccatcgtcgtcgagctcaagaa 329
           ||||||||||| ||||||||||||||
Sbjct: 394 gacaccatcgttgtcgagctcaagaa 419
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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0635G10
          Length = 146728

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 298   gccggcgacaccatcgtcgtcg 319
             ||||||||||||||||||||||
Sbjct: 42450 gccggcgacaccatcgtcgtcg 42471
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>gb|AC153958.2| Mus musculus 10 BAC RP24-541B4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 176618

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 68    ccacttactagtctttcttcct 89
             ||||||||||||||||||||||
Sbjct: 50345 ccacttactagtctttcttcct 50366
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>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323,
             complete sequence
          Length = 66637

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 287   tccgggccaaggccggcgacaccatcgtcg 316
             |||||||||||||||||||| | |||||||
Sbjct: 23383 tccgggccaaggccggcgacgcgatcgtcg 23412
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>gb|AY971876.1| Lycopersicon esculentum ascorbate oxidase (AO) mRNA, complete cds
          Length = 1984

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 373 agacagattggaacaccgtgggcggatgg 401
           ||||||||||||||||| ||||| |||||
Sbjct: 352 agacagattggaacaccatgggctgatgg 380
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>ref|XM_361698.1| Magnaporthe grisea 70-15 hypothetical protein (MG04172.4) partial
            mRNA
          Length = 2406

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 392  gggcggatggcacggcggcga 412
            |||||||||||||||||||||
Sbjct: 1320 gggcggatggcacggcggcga 1340
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>gb|DQ470894.1| Leptosphaeria maculans isolate AFTOL-ID 277 RNA polymerase II subunit
            2 (RPB2) gene, partial sequence
          Length = 1675

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 303  cgacaccatcgtcgtcgagct 323
            |||||||||||||||||||||
Sbjct: 1325 cgacaccatcgtcgtcgagct 1305
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>gb|AC015802.21| Homo sapiens chromosome 17, clone RP11-666A8, complete sequence
          Length = 205753

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     tctttcttcctccccattgct 99
              |||||||||||||||||||||
Sbjct: 178015 tctttcttcctccccattgct 178035
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 294     caaggccggcgacaccatcgt 314
               |||||||||||||||||||||
Sbjct: 2520182 caaggccggcgacaccatcgt 2520162
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 303     cgacaccatcgtcgtcgagctcaag 327
               |||||||||||||||| ||||||||
Sbjct: 2469684 cgacaccatcgtcgtcaagctcaag 2469660
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 292     gccaaggccggcgacaccatcgtcg 316
               |||||||||||||||| ||||||||
Sbjct: 4034665 gccaaggccggcgacagcatcgtcg 4034641
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>dbj|AB083032.1| Glycine max mRNA for syringolide-induced protein B13-1-1, partial
           cds
          Length = 1945

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 354 catccactggcacggcgtcagacagattggaac 386
           |||||||||||||||  | ||||||||||||||
Sbjct: 240 catccactggcacgggataagacagattggaac 272
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>gb|AF107805.1|AF107805 Sporormiella minima DNA-dependent RNA polymerase II RPB140 (RPB2)
            gene, partial cds
          Length = 2811

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 303  cgacaccatcgtcgtcgagct 323
            |||||||||||||||||||||
Sbjct: 2116 cgacaccatcgtcgtcgagct 2096
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>ref|XM_366417.1| Magnaporthe grisea 70-15 hypothetical protein (MG10635.4) partial
            mRNA
          Length = 4869

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 108  ggcgcctgtggcgttctttgcatg 131
            |||||| |||||||||||||||||
Sbjct: 2717 ggcgccggtggcgttctttgcatg 2694
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>emb|AL354979.17| Human DNA sequence from clone RP11-10J18 on chromosome 9, complete
             sequence
          Length = 85997

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    cttcctccccattgctgcca 103
             ||||||||||||||||||||
Sbjct: 26974 cttcctccccattgctgcca 26955
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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    ccggcgacaccatcgtcgtc 318
              ||||||||||||||||||||
Sbjct: 237163 ccggcgacaccatcgtcgtc 237182
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>gb|AC009695.7| Homo sapiens chromosome 8, clone RP11-130C12, complete sequence
          Length = 144328

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   gagaaggtgctcatcggcat 260
             ||||||||||||||||||||
Sbjct: 48456 gagaaggtgctcatcggcat 48475
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>gb|AC112217.2| Homo sapiens chromosome 3 clone CTD-2028L5, complete sequence
          Length = 156545

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atccattctgccttgaggaa 49
             ||||||||||||||||||||
Sbjct: 32682 atccattctgccttgaggaa 32663
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>gb|AC099054.2| Homo sapiens chromosome 3 clone RP11-489C3, complete sequence
          Length = 201564

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    atccattctgccttgaggaa 49
             ||||||||||||||||||||
Sbjct: 29022 atccattctgccttgaggaa 29041
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 296     aggccggcgacaccatcgtc 315
               ||||||||||||||||||||
Sbjct: 5835752 aggccggcgacaccatcgtc 5835771
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     gccggcgacaccatcgtcgt 317
               ||||||||||||||||||||
Sbjct: 4837900 gccggcgacaccatcgtcgt 4837919
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    caaggccggcgacaccatcg 313
              ||||||||||||||||||||
Sbjct: 122896 caaggccggcgacaccatcg 122915


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,313,829
Number of Sequences: 3902068
Number of extensions: 3313829
Number of successful extensions: 61792
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61086
Number of HSP's gapped (non-prelim): 702
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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