ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast69d01 |
|---|---|
| Clone Library Name | barley_pub |
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 59.7 bits (143), Expect = 2e-09 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 4/99 (4%) Frame = +3 Query: 21 NTVTRVSTGGNLITDVLSVPTTFRPAP--GPLATAPAFLFTCGATFLTD-GLAAGATGMA 191 N +T+ + G L DVL++ T GPL T P FLF+C +FL GL G+A Sbjct: 124 NPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVA 183 Query: 192 SLSRARFALPTQLAATFRFSRKFALCLTS-TSAAGVVXF 305 L A +LP QLA+ F R+F CL+ ++ G + F Sbjct: 184 GLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIF 222
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 56.6 bits (135), Expect = 2e-08 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Frame = +3 Query: 21 NTVTRVSTGGNLITDVLSVPTTFRPAP--GPLATAPAFLFTCGATFLTD-GLAAGATGMA 191 N +T+ + G L DVL++ T GPL T P FLF+C +FL GL G+A Sbjct: 131 NPITQQTGLGELGQDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLLQKGLPRNIQGVA 190 Query: 192 SLSRARFALPTQLAATFRFSRKFALCLT 275 L A +LP QLA+ F +F CL+ Sbjct: 191 GLGHAPISLPNQLASHFGLQHQFTTCLS 218
>COAT_FPV (P04864) Coat protein VP1 [Contains: Coat protein VP2]| Length = 727 Score = 32.0 bits (71), Expect = 0.41 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = -1 Query: 259 NLREKRKVAASCVGSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVV 80 NL +K+K A V N+A +SD +P+VRN + N G G+G + Sbjct: 124 NLAKKKKAGAGQVKRDNQAPMSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGI 183 Query: 79 GT 74 T Sbjct: 184 ST 185
>ATPG_RHOCA (P72246) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 290 Score = 32.0 bits (71), Expect = 0.41 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -1 Query: 259 NLREKRKV--AASCVGSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRK 86 +++ RK+ A V +AN R ++ A AARP + ++ AGAV S GA R Sbjct: 13 SVKNTRKITKAMQMVAAANIRRAQES---AEAARPYAERMNAVMSSLAGAVGSTDGAPRL 69 Query: 85 VVGTDSTSV 59 + GT S V Sbjct: 70 LAGTGSDKV 78
>NUPL1_HUMAN (Q9BVL2) Nucleoporin p58/p45 (Nucleoporin-like 1)| Length = 599 Score = 31.2 bits (69), Expect = 0.69 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Frame = +3 Query: 102 GPLATAPAFLFTCG------ATFLTDGLAAGATGMASLSRARFALPTQLAATFRFSRKFA 263 G + PA FT G AT +T GL G S + F+L A + FA Sbjct: 66 GLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAAS--ATPFA 123 Query: 264 LCLTSTSAAGV 296 L +TSTSA+G+ Sbjct: 124 LPITSTSASGL 134
>IRX5_MOUSE (Q9JKQ4) Iroquois-class homeodomain protein IRX-5 (Iroquois| homeobox protein 5) (Homeodomain protein IRXB2) Length = 484 Score = 30.8 bits (68), Expect = 0.91 Identities = 15/53 (28%), Positives = 22/53 (41%) Frame = -1 Query: 202 RLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVVGTDSTSVMRFPP 44 R ++ P PA + PH + A P AG G+ +SV+ PP Sbjct: 268 RAGESSPAGPATARLAEDAGPHYPASVPAPGPHPSAGELPPGSGGSSVIHSPP 320
>CCAR1_XENLA (Q641G3) Cell division cycle and apoptosis regulator protein 1| Length = 1157 Score = 30.8 bits (68), Expect = 0.91 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = +3 Query: 99 PGPLATAPAFLFTCGATFLTDGLAAGATGMASLSRARFALPTQLAATFRFSRKFALCLTS 278 PGPLA + L T T A A G+AS S A + QL+ T ++ A + Sbjct: 25 PGPLAVQQSSLLGASPTIYTQQSALAAAGLASPSPANY----QLSQTAALQQQAAAAAAA 80 Query: 279 TSAA 290 +AA Sbjct: 81 AAAA 84
>COAT_PAVC7 (P04863) Coat protein VP1 [Contains: Coat protein VP2]| Length = 722 Score = 30.8 bits (68), Expect = 0.91 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = -1 Query: 259 NLREKRKVAASCVGSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVV 80 NL +K+K A V N A +SD +P+VRN + N G G+G + Sbjct: 119 NLAKKKKAGAGQVKRDNLAPMSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGI 178 Query: 79 GT 74 T Sbjct: 179 ST 180
>COAT_MEVA (P27437) Coat protein VP1 [Contains: Coat protein VP2]| Length = 722 Score = 30.8 bits (68), Expect = 0.91 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = -1 Query: 259 NLREKRKVAASCVGSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVV 80 NL +K+K A V N A +SD +P+VRN + N G G+G + Sbjct: 119 NLAKKKKAGAGQVKRDNLAPMSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGI 178 Query: 79 GT 74 T Sbjct: 179 ST 180
>COAT_PAVCB (Q11213) Coat protein VP1 [Contains: Coat protein VP2]| Length = 727 Score = 30.8 bits (68), Expect = 0.91 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = -1 Query: 259 NLREKRKVAASCVGSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVV 80 NL +K+K A V N A +SD +P+VRN + N G G+G + Sbjct: 124 NLAKKKKAGAGQVKRDNLAPMSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGI 183 Query: 79 GT 74 T Sbjct: 184 ST 185
>COAT_FPV19 (P24840) Coat protein VP1 [Contains: Coat protein VP2]| Length = 727 Score = 30.8 bits (68), Expect = 0.91 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = -1 Query: 259 NLREKRKVAASCVGSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVV 80 NL +K+K A V N A +SD +P+VRN + N G G+G + Sbjct: 124 NLAKKKKAGAGQVKRDNLAPMSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGI 183 Query: 79 GT 74 T Sbjct: 184 ST 185
>ATPG_BRAJA (Q89X73) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 290 Score = 30.8 bits (68), Expect = 0.91 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = -1 Query: 205 ARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVVGTDSTSV 59 ++L A A AARP ++ ++ AGA A PGA + GT V Sbjct: 30 SKLRRAQTAAEAARPYADKMSAVISNIAGAAAGSPGAPALLAGTGRDQV 78
>IRX5_HUMAN (P78411) Iroquois-class homeodomain protein IRX-5 (Iroquois| homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A) Length = 482 Score = 30.8 bits (68), Expect = 0.91 Identities = 18/53 (33%), Positives = 20/53 (37%) Frame = -1 Query: 202 RLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVVGTDSTSVMRFPP 44 R P PAA + APH A A P AG G SV+ PP Sbjct: 268 RTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPP 320
>TRI55_HUMAN (Q9BYV6) Tripartite motif-containing 55 (Muscle-specific RING| finger protein 2) (MuRF2) (MURF-2) (RING finger protein 29) Length = 548 Score = 30.8 bits (68), Expect = 0.91 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = -1 Query: 244 RKVAASCVGSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGA 95 RK + ++ RA +S APAA + AP + A A ASG GA Sbjct: 480 RKAEVAAAAASERAAVSGKETSAPAATSQIGFEAPPLQGQAAAPASGSGA 529
>COAT_PAVCD (P17455) Coat protein VP1 [Contains: Coat protein VP2]| Length = 737 Score = 30.8 bits (68), Expect = 0.91 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = -1 Query: 259 NLREKRKVAASCVGSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVV 80 NL +K+K A V N A +SD +P+VRN + N G G+G + Sbjct: 134 NLAKKKKAGAGQVKRDNLAPMSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGI 193 Query: 79 GT 74 T Sbjct: 194 ST 195
>COAT_PAVCN (P12930) Coat protein VP1 [Contains: Coat protein VP2]| Length = 748 Score = 30.8 bits (68), Expect = 0.91 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = -1 Query: 259 NLREKRKVAASCVGSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVV 80 NL +K+K A V N A +SD +P+VRN + N G G+G + Sbjct: 145 NLAKKKKAGAGQVKRDNLAPMSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGI 204 Query: 79 GT 74 T Sbjct: 205 ST 206
>NUP62_HUMAN (P37198) Nuclear pore glycoprotein p62 (62 kDa nucleoporin)| Length = 522 Score = 29.6 bits (65), Expect = 2.0 Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Frame = +3 Query: 15 PENTVTRVSTGGNLITDVLSVPTTFRPAPGPLATAPAFLFTCGA-TFLTDGL---AAGAT 182 P T T STG +L + + PT+ L T + T GA T T G A GA Sbjct: 208 PTPTATITSTGPSLFASIATAPTSSATTGLSLCTP---VTTAGAPTAGTQGFSLKAPGAA 264 Query: 183 GMASLSRARFALPTQLAATFRFSRKFALCLTSTSAAGV 296 S + + A T T + FAL L + AG+ Sbjct: 265 SGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGI 302
>NUPL1_MOUSE (Q8R332) Nucleoporin p58/p45 (Nucleoporin-like 1)| Length = 587 Score = 29.3 bits (64), Expect = 2.6 Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Frame = +3 Query: 3 GSGFPENTVTRVSTG--------GNLITDVLSVPTTFRPAPGPLATAPAFLFTCGATFLT 158 GSGF TV + G+ +T + + G + PA FT G T Sbjct: 25 GSGFSFGTVASSTPSVGLNFGSLGSSVTPASTSASAGGFGTGLFGSKPATGFTLGGT--- 81 Query: 159 DGLAAGATGMASLSRARFALPTQLAATFRFSRKFALCLTSTSAAGV 296 +AG S S F+L A + FAL +TSTSA+G+ Sbjct: 82 ---SAGTAATTSASTTGFSLGFSKPAAS--ATPFALPVTSTSASGL 122
>YIAN_ECOLI (P37675) 2,3-diketo-L-gulonate TRAP transporter large permease| protein yiaN Length = 425 Score = 28.9 bits (63), Expect = 3.4 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -1 Query: 238 VAASCVGSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASG 104 +AA + S + + ++D VA P +R+ VNR AG +ASG Sbjct: 99 LAAMIMASLSGSAVADTAAVAALLVPMMRSANYPVNRAAGLIASG 143
>ATPG_RHOPA (Q6NDD1) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 291 Score = 28.1 bits (61), Expect = 5.9 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -1 Query: 205 ARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVVGTDSTSV 59 ++L A A AARP + ++ AGA A PGA + G V Sbjct: 30 SKLRRAQMAAEAARPYAEKMEAVISNIAGAAAGSPGAPVLLAGNGKDQV 78
>PYRH_STRP8 (P65940) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 202 RLSDAMPVAPAARPSVRNVA-PHVNRNAGAVASGPGAGRKVVGTDSTSVMR 53 R+ A+P+ A P +R A H+ +N V G G G TD+T+ +R Sbjct: 99 RVQTAIPMQNVAEPYIRGRALRHLEKNR-IVVFGAGIGSPYFSTDTTAALR 148
>PYRH_STRP6 (Q5XDH4) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 202 RLSDAMPVAPAARPSVRNVA-PHVNRNAGAVASGPGAGRKVVGTDSTSVMR 53 R+ A+P+ A P +R A H+ +N V G G G TD+T+ +R Sbjct: 99 RVQTAIPMQNVAEPYIRGRALRHLEKNR-IVVFGAGIGSPYFSTDTTAALR 148
>PYRH_STRP3 (P65939) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 202 RLSDAMPVAPAARPSVRNVA-PHVNRNAGAVASGPGAGRKVVGTDSTSVMR 53 R+ A+P+ A P +R A H+ +N V G G G TD+T+ +R Sbjct: 99 RVQTAIPMQNVAEPYIRGRALRHLEKNR-IVVFGAGIGSPYFSTDTTAALR 148
>PYRH_STRP1 (P65938) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 202 RLSDAMPVAPAARPSVRNVA-PHVNRNAGAVASGPGAGRKVVGTDSTSVMR 53 R+ A+P+ A P +R A H+ +N V G G G TD+T+ +R Sbjct: 99 RVQTAIPMQNVAEPYIRGRALRHLEKNR-IVVFGAGIGSPYFSTDTTAALR 148
>SURE_PSEAE (Q9HY05) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 249 Score = 27.7 bits (60), Expect = 7.7 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +3 Query: 15 PENTVTRVSTGGNLITDVLSVPTTFRPAPGPLATAPAFLFTCGATFLTDGL 167 P+ V+ ++ G NL DVL T G PAF F+ + LTD L Sbjct: 83 PDMVVSGINLGANLGDDVLYSGTVAAAIEGRFLKGPAFAFSL-VSRLTDNL 132
>M130_STRPU (P08472) Mesenchyme-specific cell surface glycoprotein precursor| (MSP130) Length = 779 Score = 27.7 bits (60), Expect = 7.7 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = +3 Query: 15 PENTVTRVSTGGNLITDVLS--VPTTFRPAPGPLATAPAFLFTCGATFLTDGLAAGATG 185 PE T+T V G++ V TTF A GP+ T P F G T+ + A G G Sbjct: 211 PEGTITTVRLAGSVSNGPSQQIVNTTFG-AGGPMMTTPMAGFPRGTTWSPNAGAGGQGG 268
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 27.7 bits (60), Expect = 7.7 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Frame = -1 Query: 271 RQSANLREKRKVAASCVGSANRARLSDAMPVAPAARPSVRNVAPHV------NRNAGAVA 110 R A + A C A A S P APA VR V R A A A Sbjct: 584 RDEAGRPDSLAAVAGCPAQAAAAAASQQQPEAPAPSVRVREAYTRVCAALGPRRKAAAAA 643 Query: 109 SGPG 98 + PG Sbjct: 644 AAPG 647
>CYSM_BACSU (O34476) Probable cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) Length = 311 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/53 (22%), Positives = 21/53 (39%) Frame = -1 Query: 163 PSVRNVAPHVNRNAGAVASGPGAGRKVVGTDSTSVMRFPPVLTRVTVFSGNPL 5 P + + + GA + G G + GT FP + V +G+P+ Sbjct: 161 PEIARAIEEIGKPLGAFVASSGTGGTITGTGEALKELFPDITVHVVEPAGSPV 213
>MBNL_HUMAN (Q9NR56) Muscleblind-like protein (Triplet-expansion RNA-binding| protein) Length = 388 Score = 27.7 bits (60), Expect = 7.7 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Frame = -1 Query: 283 EVDVRQSANLREKRKVAASCVGSANRARLSDAM-PVAPAARPSVRNVAPHVNRNAGAVAS 107 ++++ NL +++ +A A + +L++AM P AP + +VAP + NA A A Sbjct: 78 QLEINGRNNLIQQKNMAML----AQQMQLANAMMPGAPLQPVPMFSVAPSLATNASAAAF 133 Query: 106 GPGAGRKVVGTDSTSVMRFPPVLTRVTVFSGNPLP 2 P G ++ P+L VT G P+P Sbjct: 134 NPYLGPVSPSLVPAEILPTAPML--VTGNPGVPVP 166
>UVRC_CORGL (Q8NQ55) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 696 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +3 Query: 78 PTTFRPAPGPLATAP 122 PTT+RPAPG + T P Sbjct: 4 PTTYRPAPGTIPTEP 18
>UVRC_COREF (Q8FT60) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 681 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +3 Query: 78 PTTFRPAPGPLATAP 122 PTT+RPAPG + T P Sbjct: 4 PTTYRPAPGTIPTEP 18
>PIWI_BRARE (Q8UVX0) Piwi-like protein 1| Length = 858 Score = 27.7 bits (60), Expect = 7.7 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Frame = +3 Query: 42 TGGN---LITDVLSVPTTFRPAPGPLATAPAFLFTCGATFLTDGLAAGATGMASLSRARF 212 T GN L++ V + + RP PGP P F C T LTD + A M L+ Sbjct: 352 TDGNQVLLVSHVKRLGPSGRPPPGPAMLVPEF---CYLTGLTDKMRADFNIMKDLASHTR 408 Query: 213 ALPTQ 227 P Q Sbjct: 409 LSPEQ 413 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.308 0.116 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,798,719 Number of Sequences: 219361 Number of extensions: 433639 Number of successful extensions: 1852 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 1796 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1847 length of database: 80,573,946 effective HSP length: 77 effective length of database: 63,683,149 effective search space used: 1528395576 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
