ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast69d01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 385 bits (194), Expect = e-104 Identities = 274/301 (91%) Strand = Plus / Plus Query: 7 gcgggttcccggagaacaccgtcacgcgcgtcagcaccggcgggaacctcatcaccgacg 66 ||||||||||||||||||| ||||||| |||||||||| |||| ||| |||||||||||| Sbjct: 88836 gcgggttcccggagaacacggtcacgcacgtcagcaccagcggcaacgtcatcaccgacg 88895 Query: 67 tgctgtcggtgcccaccaccttccgcccggcgccggggccgctcgccaccgcgccggcgt 126 ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 88896 tgctgtccctgcccaccaccttccgcccggccccggggccgctcgccaccgcgccggcgt 88955 Query: 127 ttctgttcacgtgcggagccacgttcctgaccgacggcctcgccgccggcgccaccggca 186 | |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 88956 tcctgttcacatgcggcgccacgttcctgaccgaaggcctcgccgccggcgccaccggca 89015 Query: 187 tggcgtcgctcagccgtgcccggttcgcgctcccgacgcagctcgccgccaccttccgtt 246 ||| ||| |||||||| ||||| ||||| |||| ||||||||||||||||||||||| | Sbjct: 89016 tggtgtctctcagccgcgcccgcttcgctttccccacgcagctcgccgccaccttccgct 89075 Query: 247 tctcccgcaagttcgcgctctgcctcacgtcgacctccgcggccggggtcgtcgncttcg 306 |||||||||||||||||||||||||| || || || |||||||||| |||||| ||||| Sbjct: 89076 tctcccgcaagttcgcgctctgcctcccgccggccgccgcggccggcgtcgtcatcttcg 89135 Query: 307 g 307 | Sbjct: 89136 g 89136 Score = 335 bits (169), Expect = 5e-89 Identities = 270/304 (88%) Strand = Plus / Plus Query: 4 gcagcgggttcccggagaacaccgtcacgcgcgtcagcaccggcgggaacctcatcaccg 63 |||||| ||||||| ||||||||| |||| |||||||||||| ||| ||| ||||||||| Sbjct: 102713 gcagcgagttcccgaagaacaccgccacgagcgtcagcaccgccggcaacatcatcaccg 102772 Query: 64 acgtgctgtcggtgcccaccaccttccgcccggcgccggggccgctcgccaccgcgccgg 123 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 102773 acgtgctgtcgctgcccaccaccttccgccccgcgccggggccgctcgccaccgcgccgg 102832 Query: 124 cgtttctgttcacgtgcggagccacgttcctgaccgacggcctcgccgccggcgccaccg 183 |||| ||||||| ||||| ||||||| ||||| | || ||||||| ||||||||||| Sbjct: 102833 cgttcttgttcacctgcggccacacgttcttgacccaaggactcgccgacggcgccaccg 102892 Query: 184 gcatggcgtcgctcagccgtgcccggttcgcgctcccgacgcagctcgccgccaccttcc 243 |||||| ||| |||||||| ||||| ||||||||||| ||||||||||||| ||||||| Sbjct: 102893 gcatggtgtccctcagccgcgcccgcttcgcgctcccaacgcagctcgccgacaccttcg 102952 Query: 244 gtttctcccgcaagttcgcgctctgcctcacgtcgacctccgcggccggggtcgtcgnct 303 | ||||||||||||||||||||||||||| | || ||||||||||||| ||||||| || Sbjct: 102953 gcttctcccgcaagttcgcgctctgcctccccccggcctccgcggccggcgtcgtcgtct 103012 Query: 304 tcgg 307 |||| Sbjct: 103013 tcgg 103016 Score = 224 bits (113), Expect = 1e-55 Identities = 251/297 (84%) Strand = Plus / Plus Query: 4 gcagcgggttcccggagaacaccgtcacgcgcgtcagcaccggcgggaacctcatcaccg 63 |||||||||||||||| ||||| ||||||||||||| | ||||| ||| ||||||||| Sbjct: 91326 gcagcgggttcccggataacacggtcacgcgcgtcacggctggcggcaacatcatcaccg 91385 Query: 64 acgtgctgtcggtgcccaccaccttccgcccggcgccggggccgctcgccaccgcgccgg 123 ||||||| ||| ||||||||||||||||| | |||||||||||| ||||||||| ||||| Sbjct: 91386 acgtgctctcgctgcccaccaccttccgcaccgcgccggggccgttcgccaccgtgccgg 91445 Query: 124 cgtttctgttcacgtgcggagccacgttcctgaccgacggcctcgccgccggcgccaccg 183 ||| ||||||| || || ||||||| ||||||| |||||||| ||||||||||| Sbjct: 91446 agttcttgttcacctgtggccacacgttcttgaccgagggcctcgctaacggcgccaccg 91505 Query: 184 gcatggcgtcgctcagccgtgcccggttcgcgctcccgacgcagctcgccgccaccttcc 243 |||||| ||| |||||||| ||||| |||||| |||| |||||||||||| |||||| Sbjct: 91506 gcatggtgtccctcagccgcgcccgcttcgcgttccccacgcagctcgcccgaaccttcg 91565 Query: 244 gtttctcccgcaagttcgcgctctgcctcacgtcgacctccgcggccggggtcgtcg 300 | |||||||||| |||||||||||| ||| || || ||||||| || || ||||||| Sbjct: 91566 gcttctcccgcaggttcgcgctctgtctcccgccggcctccgcagctggcgtcgtcg 91622 Score = 200 bits (101), Expect = 2e-48 Identities = 224/265 (84%) Strand = Plus / Plus Query: 8 cgggttcccggagaacaccgtcacgcgcgtcagcaccggcgggaacctcatcaccgacgt 67 ||||||||||||| |||| |||||||||||||||||||||| ||| ||||||| ||| Sbjct: 95715 cgggttcccggagtacactatcacgcgcgtcagcaccggcggcaacatcatcacagacaa 95774 Query: 68 gctgtcggtgcccaccaccttccgcccggcgccggggccgctcgccaccgcgccggcgtt 127 ||||||| || |||||||| |||||| ||||| |||| |||||||||||||| ||| Sbjct: 95775 gctgtcgctgtacaccacctgccgccccatgccggttccgcgcgccaccgcgccggggtt 95834 Query: 128 tctgttcacgtgcggagccacgttcctgaccgacggcctcgccgccggcgccaccggcat 187 ||||||||| ||||| || |||| ||||||| | ||||||| ||||| ||||| ||||| Sbjct: 95835 tctgttcacctgcggtgcaacgtccctgaccaaaggcctcggcgccgcggccacgggcat 95894 Query: 188 ggcgtcgctcagccgtgcccggttcgcgctcccgacgcagctcgccgccaccttccgttt 247 | ||| || ||||| ||||| ||||||||||| ||||| ||||| ||| |||||| || Sbjct: 95895 gatgtcccttagccgcgcccgcttcgcgctccccacgcaagtcgcctccatcttccgctt 95954 Query: 248 ctcccgcaagttcgcgctctgcctc 272 ||||||||||||||||||||||||| Sbjct: 95955 ctcccgcaagttcgcgctctgcctc 95979
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 385 bits (194), Expect = e-104 Identities = 274/301 (91%) Strand = Plus / Plus Query: 7 gcgggttcccggagaacaccgtcacgcgcgtcagcaccggcgggaacctcatcaccgacg 66 ||||||||||||||||||| ||||||| |||||||||| |||| ||| |||||||||||| Sbjct: 19488124 gcgggttcccggagaacacggtcacgcacgtcagcaccagcggcaacgtcatcaccgacg 19488183 Query: 67 tgctgtcggtgcccaccaccttccgcccggcgccggggccgctcgccaccgcgccggcgt 126 ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 19488184 tgctgtccctgcccaccaccttccgcccggccccggggccgctcgccaccgcgccggcgt 19488243 Query: 127 ttctgttcacgtgcggagccacgttcctgaccgacggcctcgccgccggcgccaccggca 186 | |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 19488244 tcctgttcacatgcggcgccacgttcctgaccgaaggcctcgccgccggcgccaccggca 19488303 Query: 187 tggcgtcgctcagccgtgcccggttcgcgctcccgacgcagctcgccgccaccttccgtt 246 ||| ||| |||||||| ||||| ||||| |||| ||||||||||||||||||||||| | Sbjct: 19488304 tggtgtctctcagccgcgcccgcttcgctttccccacgcagctcgccgccaccttccgct 19488363 Query: 247 tctcccgcaagttcgcgctctgcctcacgtcgacctccgcggccggggtcgtcgncttcg 306 |||||||||||||||||||||||||| || || || |||||||||| |||||| ||||| Sbjct: 19488364 tctcccgcaagttcgcgctctgcctcccgccggccgccgcggccggcgtcgtcatcttcg 19488423 Query: 307 g 307 | Sbjct: 19488424 g 19488424 Score = 335 bits (169), Expect = 5e-89 Identities = 270/304 (88%) Strand = Plus / Plus Query: 4 gcagcgggttcccggagaacaccgtcacgcgcgtcagcaccggcgggaacctcatcaccg 63 |||||| ||||||| ||||||||| |||| |||||||||||| ||| ||| ||||||||| Sbjct: 19502001 gcagcgagttcccgaagaacaccgccacgagcgtcagcaccgccggcaacatcatcaccg 19502060 Query: 64 acgtgctgtcggtgcccaccaccttccgcccggcgccggggccgctcgccaccgcgccgg 123 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 19502061 acgtgctgtcgctgcccaccaccttccgccccgcgccggggccgctcgccaccgcgccgg 19502120 Query: 124 cgtttctgttcacgtgcggagccacgttcctgaccgacggcctcgccgccggcgccaccg 183 |||| ||||||| ||||| ||||||| ||||| | || ||||||| ||||||||||| Sbjct: 19502121 cgttcttgttcacctgcggccacacgttcttgacccaaggactcgccgacggcgccaccg 19502180 Query: 184 gcatggcgtcgctcagccgtgcccggttcgcgctcccgacgcagctcgccgccaccttcc 243 |||||| ||| |||||||| ||||| ||||||||||| ||||||||||||| ||||||| Sbjct: 19502181 gcatggtgtccctcagccgcgcccgcttcgcgctcccaacgcagctcgccgacaccttcg 19502240 Query: 244 gtttctcccgcaagttcgcgctctgcctcacgtcgacctccgcggccggggtcgtcgnct 303 | ||||||||||||||||||||||||||| | || ||||||||||||| ||||||| || Sbjct: 19502241 gcttctcccgcaagttcgcgctctgcctccccccggcctccgcggccggcgtcgtcgtct 19502300 Query: 304 tcgg 307 |||| Sbjct: 19502301 tcgg 19502304 Score = 224 bits (113), Expect = 1e-55 Identities = 251/297 (84%) Strand = Plus / Plus Query: 4 gcagcgggttcccggagaacaccgtcacgcgcgtcagcaccggcgggaacctcatcaccg 63 |||||||||||||||| ||||| ||||||||||||| | ||||| ||| ||||||||| Sbjct: 19490614 gcagcgggttcccggataacacggtcacgcgcgtcacggctggcggcaacatcatcaccg 19490673 Query: 64 acgtgctgtcggtgcccaccaccttccgcccggcgccggggccgctcgccaccgcgccgg 123 ||||||| ||| ||||||||||||||||| | |||||||||||| ||||||||| ||||| Sbjct: 19490674 acgtgctctcgctgcccaccaccttccgcaccgcgccggggccgttcgccaccgtgccgg 19490733 Query: 124 cgtttctgttcacgtgcggagccacgttcctgaccgacggcctcgccgccggcgccaccg 183 ||| ||||||| || || ||||||| ||||||| |||||||| ||||||||||| Sbjct: 19490734 agttcttgttcacctgtggccacacgttcttgaccgagggcctcgctaacggcgccaccg 19490793 Query: 184 gcatggcgtcgctcagccgtgcccggttcgcgctcccgacgcagctcgccgccaccttcc 243 |||||| ||| |||||||| ||||| |||||| |||| |||||||||||| |||||| Sbjct: 19490794 gcatggtgtccctcagccgcgcccgcttcgcgttccccacgcagctcgcccgaaccttcg 19490853 Query: 244 gtttctcccgcaagttcgcgctctgcctcacgtcgacctccgcggccggggtcgtcg 300 | |||||||||| |||||||||||| ||| || || ||||||| || || ||||||| Sbjct: 19490854 gcttctcccgcaggttcgcgctctgtctcccgccggcctccgcagctggcgtcgtcg 19490910 Score = 200 bits (101), Expect = 2e-48 Identities = 224/265 (84%) Strand = Plus / Plus Query: 8 cgggttcccggagaacaccgtcacgcgcgtcagcaccggcgggaacctcatcaccgacgt 67 ||||||||||||| |||| |||||||||||||||||||||| ||| ||||||| ||| Sbjct: 19495003 cgggttcccggagtacactatcacgcgcgtcagcaccggcggcaacatcatcacagacaa 19495062 Query: 68 gctgtcggtgcccaccaccttccgcccggcgccggggccgctcgccaccgcgccggcgtt 127 ||||||| || |||||||| |||||| ||||| |||| |||||||||||||| ||| Sbjct: 19495063 gctgtcgctgtacaccacctgccgccccatgccggttccgcgcgccaccgcgccggggtt 19495122 Query: 128 tctgttcacgtgcggagccacgttcctgaccgacggcctcgccgccggcgccaccggcat 187 ||||||||| ||||| || |||| ||||||| | ||||||| ||||| ||||| ||||| Sbjct: 19495123 tctgttcacctgcggtgcaacgtccctgaccaaaggcctcggcgccgcggccacgggcat 19495182 Query: 188 ggcgtcgctcagccgtgcccggttcgcgctcccgacgcagctcgccgccaccttccgttt 247 | ||| || ||||| ||||| ||||||||||| ||||| ||||| ||| |||||| || Sbjct: 19495183 gatgtcccttagccgcgcccgcttcgcgctccccacgcaagtcgcctccatcttccgctt 19495242 Query: 248 ctcccgcaagttcgcgctctgcctc 272 ||||||||||||||||||||||||| Sbjct: 19495243 ctcccgcaagttcgcgctctgcctc 19495267 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 163 gcctcgccgccggcgccaccggcatggcg 191 ||||||||| ||||||||||| ||||||| Sbjct: 25304601 gcctcgccggcggcgccaccgccatggcg 25304629
>dbj|AK070554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061A08, full insert sequence Length = 1474 Score = 385 bits (194), Expect = e-104 Identities = 274/301 (91%) Strand = Plus / Plus Query: 7 gcgggttcccggagaacaccgtcacgcgcgtcagcaccggcgggaacctcatcaccgacg 66 ||||||||||||||||||| ||||||| |||||||||| |||| ||| |||||||||||| Sbjct: 404 gcgggttcccggagaacacggtcacgcacgtcagcaccagcggcaacgtcatcaccgacg 463 Query: 67 tgctgtcggtgcccaccaccttccgcccggcgccggggccgctcgccaccgcgccggcgt 126 ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 464 tgctgtccctgcccaccaccttccgcccggccccggggccgctcgccaccgcgccggcgt 523 Query: 127 ttctgttcacgtgcggagccacgttcctgaccgacggcctcgccgccggcgccaccggca 186 | |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 524 tcctgttcacatgcggcgccacgttcctgaccgaaggcctcgccgccggcgccaccggca 583 Query: 187 tggcgtcgctcagccgtgcccggttcgcgctcccgacgcagctcgccgccaccttccgtt 246 ||| ||| |||||||| ||||| ||||| |||| ||||||||||||||||||||||| | Sbjct: 584 tggtgtctctcagccgcgcccgcttcgctttccccacgcagctcgccgccaccttccgct 643 Query: 247 tctcccgcaagttcgcgctctgcctcacgtcgacctccgcggccggggtcgtcgncttcg 306 |||||||||||||||||||||||||| || || || |||||||||| |||||| ||||| Sbjct: 644 tctcccgcaagttcgcgctctgcctcccgccggccgccgcggccggcgtcgtcatcttcg 703 Query: 307 g 307 | Sbjct: 704 g 704
>dbj|AK122177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148M15, full insert sequence Length = 1741 Score = 327 bits (165), Expect = 1e-86 Identities = 269/304 (88%) Strand = Plus / Plus Query: 4 gcagcgggttcccggagaacaccgtcacgcgcgtcagcaccggcgggaacctcatcaccg 63 |||||| ||||||| ||||||||| |||| |||||||||||| ||| ||| ||||||||| Sbjct: 592 gcagcgagttcccgaagaacaccgccacgagcgtcagcaccgccggcaacatcatcaccg 651 Query: 64 acgtgctgtcggtgcccaccaccttccgcccggcgccggggccgctcgccaccgcgccgg 123 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 652 acgtgctgtcgctgcccaccaccttccgccccgcgccggggccgctcgccaccgcgccgg 711 Query: 124 cgtttctgttcacgtgcggagccacgttcctgaccgacggcctcgccgccggcgccaccg 183 |||| ||||||| ||||| ||||||| ||||| | || ||||||| ||||||||||| Sbjct: 712 cgttcttgttcacctgcggccacacgttcttgacccaaggactcgccgacggcgccaccg 771 Query: 184 gcatggcgtcgctcagccgtgcccggttcgcgctcccgacgcagctcgccgccaccttcc 243 |||||| ||| |||||||| ||||| ||||||||||| |||| |||||||| ||||||| Sbjct: 772 gcatggtgtccctcagccgcgcccgcttcgcgctcccaacgcggctcgccgacaccttcg 831 Query: 244 gtttctcccgcaagttcgcgctctgcctcacgtcgacctccgcggccggggtcgtcgnct 303 | ||||||||||||||||||||||||||| | || ||||||||||||| ||||||| || Sbjct: 832 gcttctcccgcaagttcgcgctctgcctccccccggcctccgcggccggcgtcgtcgtct 891 Query: 304 tcgg 307 |||| Sbjct: 892 tcgg 895
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 198 bits (100), Expect = 7e-48 Identities = 192/224 (85%), Gaps = 9/224 (4%) Strand = Plus / Plus Query: 58 tcaccgacgtgctgtcggtgcccaccaccttccgcccggcgccgg---------ggccgc 108 ||||||||||||||||| ||||||||||||||| | |||| |||| |||||| Sbjct: 15505234 tcaccgacgtgctgtcgctgcccaccaccttcccctcggccccggtccggcaagggccgc 15505293 Query: 109 tcgccaccgcgccggcgtttctgttcacgtgcggagccacgttcctgaccgacggcctcg 168 ||||||||||||||||||| |||||||| ||||| |||||| ||||||| | ||||||| Sbjct: 15505294 tcgccaccgcgccggcgttcctgttcacctgcgggcccacgtccctgacccaaggcctcg 15505353 Query: 169 ccgccggcgccaccggcatggcgtcgctcagccgtgcccggttcgcgctcccgacgcagc 228 ||||||||||| | ||||||||||| |||||||| ||||| |||||||||| |||||| Sbjct: 15505354 ccgccggcgccgctggcatggcgtccctcagccgcgcccgcctcgcgctccccgcgcagc 15505413 Query: 229 tcgccgccaccttccgtttctcccgcaagttcgcgctctgcctc 272 | || | ||||||||| ||||||||||||||||||||||||||| Sbjct: 15505414 tggctggcaccttccgcttctcccgcaagttcgcgctctgcctc 15505457
>dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0689B09 Length = 144932 Score = 198 bits (100), Expect = 7e-48 Identities = 192/224 (85%), Gaps = 9/224 (4%) Strand = Plus / Plus Query: 58 tcaccgacgtgctgtcggtgcccaccaccttccgcccggcgccgg---------ggccgc 108 ||||||||||||||||| ||||||||||||||| | |||| |||| |||||| Sbjct: 26089 tcaccgacgtgctgtcgctgcccaccaccttcccctcggccccggtccggcaagggccgc 26148 Query: 109 tcgccaccgcgccggcgtttctgttcacgtgcggagccacgttcctgaccgacggcctcg 168 ||||||||||||||||||| |||||||| ||||| |||||| ||||||| | ||||||| Sbjct: 26149 tcgccaccgcgccggcgttcctgttcacctgcgggcccacgtccctgacccaaggcctcg 26208 Query: 169 ccgccggcgccaccggcatggcgtcgctcagccgtgcccggttcgcgctcccgacgcagc 228 ||||||||||| | ||||||||||| |||||||| ||||| |||||||||| |||||| Sbjct: 26209 ccgccggcgccgctggcatggcgtccctcagccgcgcccgcctcgcgctccccgcgcagc 26268 Query: 229 tcgccgccaccttccgtttctcccgcaagttcgcgctctgcctc 272 | || | ||||||||| ||||||||||||||||||||||||||| Sbjct: 26269 tggctggcaccttccgcttctcccgcaagttcgcgctctgcctc 26312
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 198 bits (100), Expect = 7e-48 Identities = 192/224 (85%), Gaps = 9/224 (4%) Strand = Plus / Plus Query: 58 tcaccgacgtgctgtcggtgcccaccaccttccgcccggcgccgg---------ggccgc 108 ||||||||||||||||| ||||||||||||||| | |||| |||| |||||| Sbjct: 154526 tcaccgacgtgctgtcgctgcccaccaccttcccctcggccccggtccggcaagggccgc 154585 Query: 109 tcgccaccgcgccggcgtttctgttcacgtgcggagccacgttcctgaccgacggcctcg 168 ||||||||||||||||||| |||||||| ||||| |||||| ||||||| | ||||||| Sbjct: 154586 tcgccaccgcgccggcgttcctgttcacctgcgggcccacgtccctgacccaaggcctcg 154645 Query: 169 ccgccggcgccaccggcatggcgtcgctcagccgtgcccggttcgcgctcccgacgcagc 228 ||||||||||| | ||||||||||| |||||||| ||||| |||||||||| |||||| Sbjct: 154646 ccgccggcgccgctggcatggcgtccctcagccgcgcccgcctcgcgctccccgcgcagc 154705 Query: 229 tcgccgccaccttccgtttctcccgcaagttcgcgctctgcctc 272 | || | ||||||||| ||||||||||||||||||||||||||| Sbjct: 154706 tggctggcaccttccgcttctcccgcaagttcgcgctctgcctc 154749
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 158 cgacggcctcgccgccggcgcc 179 |||||||||||||||||||||| Sbjct: 3940653 cgacggcctcgccgccggcgcc 3940674 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 cgacggcctcgccgccggcgc 178 ||||||||||||||||||||| Sbjct: 400616 cgacggcctcgccgccggcgc 400636 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ccgacggcctcgccgccggc 176 |||||||||||||||||||| Sbjct: 2784111 ccgacggcctcgccgccggc 2784092
>ref|NM_193851.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 666 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 144 gccacgttcctgaccgacggcctcg 168 ||||| ||||||||||||||||||| Sbjct: 638 gccaccttcctgaccgacggcctcg 614
>ref|NM_190328.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1599 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 158 cgacggcctcgccgccggcgccaccggca 186 |||||||||||||||| |||||| ||||| Sbjct: 882 cgacggcctcgccgcccgcgccagcggca 910
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06, complete sequence Length = 142068 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 163 gcctcgccgccggcgccaccggcatggcg 191 ||||||||| ||||||||||| ||||||| Sbjct: 39205 gcctcgccggcggcgccaccgccatggcg 39233
>ref|XM_540131.2| PREDICTED: Canis familiaris similar to Hypothetical UPF0184 protein C9orf16 homolog (LOC483016), mRNA Length = 1022 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ccaccttccgcccggcgccgg 102 ||||||||||||||||||||| Sbjct: 58 ccaccttccgcccggcgccgg 78
>ref|NM_004996.2| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (ABCC1), transcript variant 1, mRNA Length = 5927 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 cgccgccggcgccaccggcatggcg 191 ||||||| ||||||||||||||||| Sbjct: 178 cgccgcccgcgccaccggcatggcg 202
>ref|NM_019862.1| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (ABCC1), transcript variant 2, mRNA Length = 5749 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 cgccgccggcgccaccggcatggcg 191 ||||||| ||||||||||||||||| Sbjct: 178 cgccgcccgcgccaccggcatggcg 202
>ref|NM_019899.1| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (ABCC1), transcript variant 4, mRNA Length = 5582 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 cgccgccggcgccaccggcatggcg 191 ||||||| ||||||||||||||||| Sbjct: 178 cgccgcccgcgccaccggcatggcg 202
>ref|NM_019901.1| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (ABCC1), transcript variant 6, mRNA Length = 5801 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 cgccgccggcgccaccggcatggcg 191 ||||||| ||||||||||||||||| Sbjct: 178 cgccgcccgcgccaccggcatggcg 202
>ref|NM_019898.1| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (ABCC1), transcript variant 3, mRNA Length = 5759 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 cgccgccggcgccaccggcatggcg 191 ||||||| ||||||||||||||||| Sbjct: 178 cgccgcccgcgccaccggcatggcg 202
>ref|NM_019900.1| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (ABCC1), transcript variant 5, mRNA Length = 5732 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 cgccgccggcgccaccggcatggcg 191 ||||||| ||||||||||||||||| Sbjct: 178 cgccgcccgcgccaccggcatggcg 202
>ref|NM_019902.1| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (ABCC1), transcript variant 7, mRNA Length = 5780 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 cgccgccggcgccaccggcatggcg 191 ||||||| ||||||||||||||||| Sbjct: 178 cgccgcccgcgccaccggcatggcg 202
>gb|AC130651.2| Homo sapiens chromosome 16 clone CTA-972D3, complete sequence Length = 168190 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 cgccgccggcgccaccggcatggcg 191 ||||||| ||||||||||||||||| Sbjct: 117012 cgccgcccgcgccaccggcatggcg 117036
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 cctcgccgccggcgccaccggcatg 188 ||||||||||||||||| ||||||| Sbjct: 273945 cctcgccgccggcgccatcggcatg 273921
>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065G12 Length = 165006 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 158 cgacggcctcgccgccggcgccaccggca 186 |||||||||||||||| |||||| ||||| Sbjct: 115235 cgacggcctcgccgcccgcgccagcggca 115263
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 cctcgccgccggcgccaccgg 184 ||||||||||||||||||||| Sbjct: 2669940 cctcgccgccggcgccaccgg 2669920
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 ctgaccgacggcctcgccgccggcg 177 |||||||||| |||||||||||||| Sbjct: 2125593 ctgaccgacgccctcgccgccggcg 2125569
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 158 cgacggcctcgccgccggcgccaccggca 186 |||||||||||||||| |||||| ||||| Sbjct: 39313529 cgacggcctcgccgcccgcgccagcggca 39313557 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 144 gccacgttcctgaccgacggcctcg 168 ||||| ||||||||||||||||||| Sbjct: 15327291 gccaccttcctgaccgacggcctcg 15327267
>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0551C06 Length = 149829 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 158 cgacggcctcgccgccggcgccaccggca 186 |||||||||||||||| |||||| ||||| Sbjct: 94775 cgacggcctcgccgcccgcgccagcggca 94803
>dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1045D11 Length = 142320 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 144 gccacgttcctgaccgacggcctcg 168 ||||| ||||||||||||||||||| Sbjct: 4832 gccaccttcctgaccgacggcctcg 4808
>dbj|AP003198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1039D07 Length = 135301 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 144 gccacgttcctgaccgacggcctcg 168 ||||| ||||||||||||||||||| Sbjct: 68650 gccaccttcctgaccgacggcctcg 68626
>dbj|AK108314.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-G07, full insert sequence Length = 821 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 144 gccacgttcctgaccgacggcctcg 168 ||||| ||||||||||||||||||| Sbjct: 724 gccaccttcctgaccgacggcctcg 700
>emb|X78338.1|SATHRMRP Synthetic adenovirus transformed human retina cell line, MRP mRNA Length = 5867 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 cgccgccggcgccaccggcatggcg 191 ||||||| ||||||||||||||||| Sbjct: 119 cgccgcccgcgccaccggcatggcg 143
>gb|L05628.1|HUMMRPX Human multidrug resistance-associated protein (MRP) mRNA, complete cds Length = 5011 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 cgccgccggcgccaccggcatggcg 191 ||||||| ||||||||||||||||| Sbjct: 178 cgccgcccgcgccaccggcatggcg 202
>gb|U07050.1|HSU07050 Human (MRP) gene, 5' regulatory region Length = 2228 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 cgccgccggcgccaccggcatggcg 191 ||||||| ||||||||||||||||| Sbjct: 2187 cgccgcccgcgccaccggcatggcg 2211
>ref|XM_481921.1| Oryza sativa (japonica cultivar-group), mRNA Length = 717 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gccgctcgccaccgcgccgg 123 |||||||||||||||||||| Sbjct: 301 gccgctcgccaccgcgccgg 320 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gccgctcgccaccgcgccgg 123 |||||||||||||||||||| Sbjct: 86 gccgctcgccaccgcgccgg 105
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tccgcccggcgccggggccg 107 |||||||||||||||||||| Sbjct: 2942773 tccgcccggcgccggggccg 2942754
>gb|DQ175936.1| Hordeum vulgare subsp. vulgare clone 33-32A-RB flanking T-DNA insertion sequence Length = 943 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 cgacggcctcgccgccggcg 177 |||||||||||||||||||| Sbjct: 824 cgacggcctcgccgccggcg 805
>emb|AM085146.1| Magnetospirillum gryphiswaldense magnetosome island Length = 130000 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gaccgacggcctcgccgccg 174 |||||||||||||||||||| Sbjct: 30032 gaccgacggcctcgccgccg 30013
>ref|XM_844545.1| PREDICTED: Canis familiaris similar to growth factor receptor-bound protein 10 isoform a (LOC607755), mRNA Length = 1323 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cgcgcgtcagcaccggcggg 50 |||||||||||||||||||| Sbjct: 328 cgcgcgtcagcaccggcggg 309
>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14 Length = 307550 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tccgcccggcgccggggccg 107 |||||||||||||||||||| Sbjct: 96595 tccgcccggcgccggggccg 96576
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cctcgccgccggcgccaccg 183 |||||||||||||||||||| Sbjct: 1389051 cctcgccgccggcgccaccg 1389032
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ccgacggcctcgccgccggc 176 |||||||||||||||||||| Sbjct: 1335346 ccgacggcctcgccgccggc 1335327
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ccgacggcctcgccgccggc 176 |||||||||||||||||||| Sbjct: 4569323 ccgacggcctcgccgccggc 4569304
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13 Length = 346051 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tccgcccggcgccggggccg 107 |||||||||||||||||||| Sbjct: 173593 tccgcccggcgccggggccg 173574
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 cctcgccgccggcgccaccg 183 |||||||||||||||||||| Sbjct: 54395 cctcgccgccggcgccaccg 54414
>dbj|AB226463.1| Aspergillus oryzae cDNA, contig sequence: AoEST3325 Length = 810 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cgtcgacctccgcggccggg 293 |||||||||||||||||||| Sbjct: 674 cgtcgacctccgcggccggg 655
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 ctcgccgccggcgccaccggcatg 188 |||| ||||||||||||||||||| Sbjct: 1178571 ctcggcgccggcgccaccggcatg 1178548
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cgtcgacctccgcggccggg 293 |||||||||||||||||||| Sbjct: 1456712 cgtcgacctccgcggccggg 1456693
>emb|CR390901.1| Gallus gallus finished cDNA, clone ChEST399n18 Length = 885 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 ccgcccggcgccggggccgc 108 |||||||||||||||||||| Sbjct: 77 ccgcccggcgccggggccgc 96
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gccgctcgccaccgcgccgg 123 |||||||||||||||||||| Sbjct: 16377071 gccgctcgccaccgcgccgg 16377090 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gccgctcgccaccgcgccgg 123 |||||||||||||||||||| Sbjct: 16376856 gccgctcgccaccgcgccgg 16376875
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gccgctcgccaccgcgccgg 123 |||||||||||||||||||| Sbjct: 8030785 gccgctcgccaccgcgccgg 8030766 Score = 40.1 bits (20), Expect = 4.0 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 212 cgcgctcccgacgcag-ctcgccgccac 238 |||||||||||||||| ||||||||||| Sbjct: 5653467 cgcgctcccgacgcagcctcgccgccac 5653440
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ctccgcggccggggtcgtcg 300 |||||||||||||||||||| Sbjct: 4945816 ctccgcggccggggtcgtcg 4945835
>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046H10 Length = 155544 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gccgctcgccaccgcgccgg 123 |||||||||||||||||||| Sbjct: 138303 gccgctcgccaccgcgccgg 138284
>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0592E11 Length = 153734 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gccgctcgccaccgcgccgg 123 |||||||||||||||||||| Sbjct: 54554 gccgctcgccaccgcgccgg 54535
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021C04 Length = 162115 Score = 40.1 bits (20), Expect = 4.0 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 212 cgcgctcccgacgcag-ctcgccgccac 238 |||||||||||||||| ||||||||||| Sbjct: 45614 cgcgctcccgacgcagcctcgccgccac 45587
>dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0426E02 Length = 166985 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gccgctcgccaccgcgccgg 123 |||||||||||||||||||| Sbjct: 82923 gccgctcgccaccgcgccgg 82942 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gccgctcgccaccgcgccgg 123 |||||||||||||||||||| Sbjct: 82708 gccgctcgccaccgcgccgg 82727
>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940127D9, complete sequence Length = 102832 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 ctccgcggccggggtcgtcg 300 |||||||||||||||||||| Sbjct: 2749 ctccgcggccggggtcgtcg 2730 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,707,622 Number of Sequences: 3902068 Number of extensions: 1707622 Number of successful extensions: 47033 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 44568 Number of HSP's gapped (non-prelim): 2466 length of query: 307 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 285 effective length of database: 17,147,199,772 effective search space: 4886951935020 effective search space used: 4886951935020 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
