ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast69c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DENR_CAEEL (Q9NAH4) Density-regulated protein homolog 29 5.4
2HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated... 28 9.2

>DENR_CAEEL (Q9NAH4) Density-regulated protein homolog|
          Length = 192

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 272 DTQGAVVLAVVQGPIRGVQCPLRSRFAGLCT 364
           D + AV+ ++  GPI GV  PL+  + G C+
Sbjct: 3   DGETAVIQSLAPGPIDGVSYPLKMVYCGQCS 33



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>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 324 TPRMGPCTTARTTAP 280
           TPR+GP  TART AP
Sbjct: 819 TPRLGPAPTARTAAP 833


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,727,692
Number of Sequences: 219361
Number of extensions: 481963
Number of successful extensions: 1406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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