>CX6A1_MOUSE (P43024) Cytochrome c oxidase polypeptide VIa-liver, mitochondrial|
           precursor (EC 1.9.3.1)
          Length = 111

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +3

Query: 132 HDDAYETAKWEKITIMGAVTCTLLAAWN--LSKGHPHYDEPP--AYPYLRIRNKEFPWG 296
           H +      W+ +T   A+    ++  N  L   H  ++ PP  AYP+LRIR K FPWG
Sbjct: 31  HGEEGSARMWKALTYFVALPGVGVSMLNVFLKSRHEEHERPPFVAYPHLRIRTKPFPWG 89

>COX6A_CAEEL (Q20779) Probable cytochrome c oxidase polypeptide VIa,|
           mitochondrial precursor (EC 1.9.3.1)
          Length = 128

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
 Frame = +3

Query: 159 WEKITIMGAVTC---TLLAAWNLSKGHPHYDEPP--AYPYLRIRNKEFPW--GPNGLFEV 317
           W+KI  + ++ C   T+ AA+   K H  ++ P    Y +L +RNK FPW  G + LF  
Sbjct: 51  WKKIFFIASIPCLALTMYAAFKDHKKHMSHERPEHVEYAFLNVRNKPFPWSDGNHSLFHN 110

Query: 318 K 320
           K
Sbjct: 111 K 111

>CX6A1_BOVIN (P13182) Cytochrome c oxidase polypeptide VIa-liver (EC 1.9.3.1)|
           (SSG)
          Length = 85

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +3

Query: 132 HDDAYETAKWEKITIMGAVTCTLLAAWNL-SKGHPHYDEPP---AYPYLRIRNKEFPWG 296
           H +      W+ +T+  A+    ++  N+  K H   +E P   AYP+LRIR+K FPWG
Sbjct: 5   HGEEGSARMWKALTLFVALPGVGVSMLNVFMKSHHGEEERPEFVAYPHLRIRSKPFPWG 63

>CX6A1_HUMAN (P12074) Cytochrome c oxidase polypeptide VIa-liver, mitochondrial|
           precursor (EC 1.9.3.1)
          Length = 109

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 132 HDDAYETAKWEKITIMGAVTCTLLAAWN--LSKGHPHYDEPP--AYPYLRIRNKEFPWG 296
           H +      W+ +T   A+    ++  N  L   H  ++ P   AYP+LRIR K FPWG
Sbjct: 29  HGEEGSARMWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWG 87

>CX6A1_RABIT (Q9TTT7) Cytochrome c oxidase polypeptide VIa-liver, mitochondrial|
           precursor (EC 1.9.3.1)
          Length = 109

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +3

Query: 132 HDDAYETAKWEKITIMGAVTCTLLAAWN--LSKGHPHYDEPP--AYPYLRIRNKEFPWG 296
           H +      W+ +T   A+    ++  N  L   H  ++ P   AYP+LRIR+K FPWG
Sbjct: 29  HGEEGSARMWKALTYFVALPGVGVSMLNVYLKSHHEEHERPEFIAYPHLRIRSKPFPWG 87

>CX6A1_RAT (P10818) Cytochrome c oxidase polypeptide VIa-liver, mitochondrial|
           precursor (EC 1.9.3.1)
          Length = 111

 Score = 36.2 bits (82), Expect = 0.031
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 132 HDDAYETAKWEKITIMGAVTCTLLAAWN--LSKGHPHYDEPP--AYPYLRIRNKEFPWG 296
           H +      W+ +T   A+    ++  N  L   H  ++ P   AYP+LRIR K FPWG
Sbjct: 31  HGEEGSARIWKALTYFVALPGVGVSMLNVFLKSRHEEHERPEFVAYPHLRIRTKPFPWG 89

>CX6A2_HUMAN (Q02221) Cytochrome c oxidase polypeptide VIa-heart, mitochondrial|
           precursor (EC 1.9.3.1) (COXVIAH)
          Length = 97

 Score = 35.8 bits (81), Expect = 0.040
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +3

Query: 159 WEKITIMGAVTCTLLAAWN--LSKGHPHYDEPPAYPYLRIRNKEFPWGPNG--LFEVKH 323
           W  +T + A+    L  +N  L  GH    E   Y +LRIR K +PWG     LF   H
Sbjct: 28  WRLLTFVLALPSVALCTFNSYLHSGHRERPEFRPYQHLRIRTKPYPWGDGNHTLFHNSH 86

>CX6A2_PONPY (Q5RC38) Cytochrome c oxidase polypeptide VIa-heart, mitochondrial|
           precursor (EC 1.9.3.1) (COXVIAH)
          Length = 97

 Score = 34.7 bits (78), Expect = 0.089
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 159 WEKITIMGAVTCTLLAAWN--LSKGHPHYDEPPAYPYLRIRNKEFPWG 296
           W  +T + A+    L  +N  L  GH    E   Y +LRIR K +PWG
Sbjct: 28  WRLLTFVLALPSVALCTFNSYLHSGHRPRPEFRPYQHLRIRTKPYPWG 75

>CX6A1_ONCMY (O13085) Cytochrome c oxidase polypeptide VIa, mitochondrial|
           precursor (EC 1.9.3.1)
          Length = 102

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 168 ITIMGAVTCTLLAAWNLSKGHPHYDEPP---AYPYLRIRNKEFPWGP--NGLFEVKHDH 329
           + + G   C   A   + +   H  EPP   AY +LRIR K++PWG   + LF   H++
Sbjct: 36  LALPGVAVCIANAYMKMQQ---HSHEPPEFVAYSHLRIRTKKWPWGDGNHSLFHNPHEN 91

>CX6A2_RAT (P10817) Cytochrome c oxidase polypeptide VIa-heart, mitochondrial|
           precursor (EC 1.9.3.1) (COXVIAH) (Fragment)
          Length = 94

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 159 WEKITIMGAVTCTLLAAWNLSKGHPHYDEPPAYPY--LRIRNKEFPWG 296
           W  +T + A+    L + N      H++ P   PY  LRIR K F WG
Sbjct: 25  WRLLTFVLALPSVALCSLNCWMHAGHHERPEFIPYHHLRIRTKPFSWG 72

>CX6A1_CYPCA (O13082) Cytochrome c oxidase polypeptide VIa, mitochondrial|
           precursor (EC 1.9.3.1)
          Length = 102

 Score = 32.0 bits (71), Expect = 0.58
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +3

Query: 222 KGHPHYDEPPA---YPYLRIRNKEFPWGP--NGLFEVKH 323
           K   H  +PP    YP+LRIR K +PWG   + LF   H
Sbjct: 51  KMQAHSHDPPEFVPYPHLRIRTKPWPWGDGNHSLFHNAH 89

>CX6A2_MOUSE (P43023) Cytochrome c oxidase polypeptide VIa-heart, mitochondrial|
           precursor (EC 1.9.3.1) (COXVIAH)
          Length = 97

 Score = 32.0 bits (71), Expect = 0.58
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 159 WEKITIMGAVTCTLLAAWNLSKGHPHYDEPPAYPY--LRIRNKEFPWG 296
           W  +T + A+    L + N      H++ P   PY  LRIR K F WG
Sbjct: 28  WRLLTFVLALPGVALCSLNCWMHAGHHERPEFIPYHHLRIRTKPFAWG 75

>FLAB2_METJA (Q58302) Flagellin B2 precursor|
          Length = 217

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 144 YETAKWEKITIMGAVTCTLLAAWNLSKG 227
           Y +  +  +T  G VT T LAAWNLS G
Sbjct: 112 YNSNAYADLTTGGEVTNTSLAAWNLSGG 139

>IF2_SYMTH (Q67P86) Translation initiation factor IF-2|
          Length = 1044

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 209 VEPLQGPPTLRRAAGLPLPAHPQQGVP 289
           V+P  G  T  RA GL LP  P+ G P
Sbjct: 349 VKPAAGQGTAARAGGLGLPQKPKAGAP 375

>AGO2_DROME (Q9VUQ5) Argonaute 2 protein|
          Length = 1214

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 221 QGPPTLRRAAGLPLPAHPQQGVPLGT 298
           +GPP  ++AA LPLP  P   +  GT
Sbjct: 384 RGPPQQQQAAPLPLPPQPAGSIKRGT 409

>CX6A2_BOVIN (P07471) Cytochrome c oxidase polypeptide VIa-heart, mitochondrial|
           precursor (EC 1.9.3.1) (COXVIAH) (Polypeptide VIb)
          Length = 97

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +3

Query: 159 WEKITIMGAVTCTLLAAWNLSKGHPHYDEPPAYPY--LRIRNKEFPWG 296
           W  +T   A+    L   N      H + P   PY  LRIR K F WG
Sbjct: 28  WRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWG 75

>MUS81_RAT (Q4KM32) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 551

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 221 QGPPTLRRAAGLPLPAHPQQGVPLGTQWP 307
           +GPP   + + +P+P  PQ G      WP
Sbjct: 104 KGPPAQVQGSSMPVPTQPQAGSTNAGYWP 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,881,730
Number of Sequences: 219361
Number of extensions: 625232
Number of successful extensions: 1836
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)