ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast69c04 |
|---|---|
| Clone Library Name | barley_pub |
>AVT1_YEAST (P47082) Vacuolar amino acid transporter 1| Length = 602 Score = 57.0 bits (136), Expect = 1e-08 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Frame = +3 Query: 99 GTASFVRTCLNGVNALSGVGVLSVPYXXXXXXXXXXXXXXXXXXXCWY-TGLLVGRCMDA 275 G ++ +T N +N L G+G+L++P + T L+ RC+D Sbjct: 206 GQSTAPQTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLDT 265 Query: 276 DPAIRTYPDIGRRAFGPPGRLLVSSFLYAEVYLVAVGFLILDGD 407 DP + +Y D+G AFG GR L+S+ ++ V +IL GD Sbjct: 266 DPTLISYADLGYAAFGTKGRALISALFTLDLLGSGVSLVILFGD 309
>S38A3_RAT (Q9JHZ9) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 34.3 bits (77), Expect = 0.072 Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 15/117 (12%) Frame = +3 Query: 96 DGTASFVRTCLNGVNALSGVGVLSVPYXXXXXXXXXXXXXXXXXXXCWYTGLLVGRCMDA 275 +G SF + N NA+ G G+L + Y + + Sbjct: 62 EGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSG 121 Query: 276 DPAIRTYPDIGRRAFGPPGRL------------LVSSFLY---AEVYLVAVGFLILD 401 IR Y +G RAFG PG+L +SS+LY +E+ LV FL L+ Sbjct: 122 IVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLE 178
>S38A3_HUMAN (Q99624) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 34.3 bits (77), Expect = 0.072 Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 15/117 (12%) Frame = +3 Query: 96 DGTASFVRTCLNGVNALSGVGVLSVPYXXXXXXXXXXXXXXXXXXXCWYTGLLVGRCMDA 275 +G SF + N NA+ G G+L + Y + + Sbjct: 63 EGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSG 122 Query: 276 DPAIRTYPDIGRRAFGPPGRL------------LVSSFLY---AEVYLVAVGFLILD 401 IR Y +G RAFG PG+L +SS+LY +E+ LV FL L+ Sbjct: 123 VVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLE 179
>S38A3_MOUSE (Q9DCP2) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) (mNAT) Length = 505 Score = 34.3 bits (77), Expect = 0.072 Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 15/117 (12%) Frame = +3 Query: 96 DGTASFVRTCLNGVNALSGVGVLSVPYXXXXXXXXXXXXXXXXXXXCWYTGLLVGRCMDA 275 +G SF + N NA+ G G+L + Y + + Sbjct: 62 EGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSG 121 Query: 276 DPAIRTYPDIGRRAFGPPGRL------------LVSSFLY---AEVYLVAVGFLILD 401 IR Y +G RAFG PG+L +SS+LY +E+ LV FL L+ Sbjct: 122 IVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLE 178
>MTR_NEUCR (P38680) N amino acid transport system protein (Methyltryptophan| resistance protein) Length = 470 Score = 32.7 bits (73), Expect = 0.21 Identities = 19/57 (33%), Positives = 29/57 (50%) Frame = +3 Query: 234 CWYTGLLVGRCMDADPAIRTYPDIGRRAFGPPGRLLVSSFLYAEVYLVAVGFLILDG 404 C YT ++G+ P I Y D+GR FG G ++ SF++ + VG +L G Sbjct: 97 CIYTAHVIGQTKLKHPEIAHYADVGRVMFGRWGYEII-SFMFVLQLIFIVGSHVLTG 152
>YJ13_SCHPO (O13681) Hypothetical protein C737.03c in chromosome III| Length = 615 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -3 Query: 160 TPTPDKALTPLRQVRTKLAVPSFRAPFCAAC 68 TPT DK + P +R + SF++PFC C Sbjct: 70 TPTQDKGVGPFYAIRDFPSSSSFQSPFCEKC 100
>DNAA_NOCFA (Q5Z3Z8) Chromosomal replication initiator protein dnaA| Length = 662 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = -3 Query: 385 PTATRYTSAYRKDDTSRRPGGPKARRPMSGYVRIAGSASMQRPTRRPVYQQ 233 PTA R + R + RP P+ RP+ G + G ++ RP P Y Q Sbjct: 98 PTAERAAANPRHARMTSRPERPRGERPVPG---LPGQEAVDRPETLPRYSQ 145
>SIA7E_HUMAN (Q9BVH7) Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase| 5 (EC 2.4.99.-) (GalNAc alpha-2,6-sialyltransferase V) (ST6GalNAc V) (GD1 alpha synthase) (Sialyltransferase 7E) Length = 336 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = -3 Query: 397 RMRKPTATRYTSAYRKDDTSRRPGGPKARRPMSGYVRIA 281 + ++ +AT + + T +RPG P RP+ GY+ +A Sbjct: 46 QQQQASATGSSQPAAESSTQQRPGVPAGPRPLDGYLGVA 84
>VE1_HPV52 (P36730) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 647 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +3 Query: 24 HAVPLLGKKEAARPEQAAQNGARNDGTASFVRTCLN 131 HAV + +K + PE A Q+G G+ C+N Sbjct: 80 HAVSAVKRKFTSSPESAGQDGVEKHGSPRAKHICVN 115
>CYP1_BRUMA (Q27450) Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (PPIase| 1) (Cyclophilin) (BmCYP-1) Length = 843 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -3 Query: 397 RMRKPTATRYTSAYRKDDTSRRPGGPKARRPMSGYVR-IAGSASMQRPTRRPVYQQ 233 R R R +S+ R RR K+R GYVR G + +RPTRR +Y + Sbjct: 707 RSRSNGRRRRSSSRRSRSRDRRH---KSRSRSRGYVRRFEGWSRSRRPTRRELYDE 759
>ZN592_HUMAN (Q92610) Zinc finger protein 592| Length = 1267 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -2 Query: 398 EDEEADGDEVHLGVQERRHEQAAGRPEGAPAYVRVRPDCRVGVHAAPDEE 249 E EE G+EV + +E E+ AG P A P+ R + AP+++ Sbjct: 1200 EPEEGSGEEVPMETRENGLEECAGEPLSAD------PEARRLLGPAPEDD 1243
>HTPX2_METAC (Q8TP15) Probable protease htpX homolog 2 (EC 3.4.24.-)| Length = 294 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +3 Query: 312 RAFGPPGRLLVSSFLYAEVYLVAVGFLILDG 404 R G GR+L + FL A VYL + FL G Sbjct: 7 RDLGLQGRMLFTMFLLAAVYLFFLAFLSYSG 37
>HM20B_MOUSE (Q9Z104) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily E member 1-related (SMARCE1-related protein) (HMG domain protein HMG20B) (Structural DNA-binding protein BRAF35) (BRCA2-associated factor 35) Length = 317 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -3 Query: 331 PGGPKARRPMSGYVRIAGSASMQRPTRRP 245 P GPKA P++GYVR Q TR P Sbjct: 67 PNGPKA--PVTGYVRFLNERREQIRTRHP 93
>HM20B_HUMAN (Q9P0W2) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily E member 1-related (SMARCE1-related protein) (HMG domain protein HMG20B) (Structural DNA-binding protein BRAF35) (BRCA2-associated factor 35) (Sox-lik Length = 317 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -3 Query: 331 PGGPKARRPMSGYVRIAGSASMQRPTRRP 245 P GPKA P++GYVR Q TR P Sbjct: 67 PNGPKA--PVTGYVRFLNERREQIRTRHP 93
>DRP3A_ARATH (Q8S944) Dynamin-related protein 3A (Dynamin-like protein 2)| (Dynamin-like protein 2a) Length = 808 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -2 Query: 161 HPDT*QGVDAVEASSHEAGGAVVPSPVLCRLLRPRGLFLPEK 36 HP+ G AVEA+ H+ + +P PV RP+ P++ Sbjct: 526 HPNFIGGTKAVEAAMHQVKSSRIPHPV----ARPKDTVEPDR 563 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,894,384 Number of Sequences: 219361 Number of extensions: 779123 Number of successful extensions: 2598 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2510 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2594 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
