ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast69c01 |
|---|---|
| Clone Library Name | barley_pub |
>LIX1L_MOUSE (Q8BQ89) LIX1-like protein| Length = 337 Score = 30.8 bits (68), Expect = 1.0 Identities = 20/55 (36%), Positives = 26/55 (47%) Frame = -2 Query: 195 GDGGAPTLRCRSTRVTRRQSAHRTPELDPAGGATMPAPQCLHHDVILGGPVLPMP 31 G GG TLR VT ++ TP + P PAP L ++ G P LP+P Sbjct: 14 GVGGRGTLRALRPGVTGAPTSAATPPVGPPPAPPPPAPP-LPPLLLAGAPGLPLP 67
>DNJA3_MOUSE (Q99M87) DnaJ homolog subfamily A member 3, mitochondrial precursor| (Tumorous imaginal discs protein Tid56 homolog) (DnaJ protein Tid-1) (mTid-1) Length = 480 Score = 29.3 bits (64), Expect = 2.9 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +2 Query: 41 NTGPPRMTSWCRHCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAP 187 NTGP M S CR CG GS C +CR + ++ + V P Sbjct: 265 NTGPFVMRSTCRRCGG------RGSIITNPCVVCRGAGQAKQKKRVTIP 307
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 28.5 bits (62), Expect = 5.0 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +2 Query: 68 WCRHCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAPPSPPRTVR 211 WCRHCGA +S+G+RC T+ S+ + P R R Sbjct: 1049 WCRHCGA--------TSAGLRCEWQNNYTQCAPCASLSSCPVCCRNYR 1088
>DNJA3_HUMAN (Q96EY1) DnaJ homolog subfamily A member 3, mitochondrial precursor| (Tumorous imaginal discs protein Tid56 homolog) (DnaJ protein Tid-1) (hTid-1) Length = 480 Score = 28.5 bits (62), Expect = 5.0 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +2 Query: 41 NTGPPRMTSWCRHCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAP 187 NTGP M S CR CG GS C +CR + ++ + V P Sbjct: 265 NTGPFVMRSTCRRCGG------RGSIIISPCVVCRGAGQAKQKKRVMIP 307
>FPG_XANCP (Q8P3C4) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)| (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM) Length = 270 Score = 28.5 bits (62), Expect = 5.0 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 Query: 71 CRHCGAGIVAPPAGSSSGVRCALCRR 148 CRHCG + G + V CA C+R Sbjct: 245 CRHCGGELKHATIGQRATVWCAACQR 270
>FPG_XANC8 (Q4UNU6) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)| (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM) Length = 270 Score = 28.5 bits (62), Expect = 5.0 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 Query: 71 CRHCGAGIVAPPAGSSSGVRCALCRR 148 CRHCG + G + V CA C+R Sbjct: 245 CRHCGGELKHATIGQRATVWCAACQR 270
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 28.5 bits (62), Expect = 5.0 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 15/60 (25%) Frame = -2 Query: 189 GGAPTLRCRSTRVTRRQSAHRTPELDPAGGATM---------------PAPQCLHHDVIL 55 GG+P L RST VTR S H+ + PA + + P P+ HH ++L Sbjct: 267 GGSPGLESRSTAVTRTSSIHQL--IAPASYSPIQPHSLIKHQQIPLHSPPPKVSHHQLLL 324
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 28.5 bits (62), Expect = 5.0 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +2 Query: 68 WCRHCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAPPSPPRTVR 211 WCRHCGA +S+G+RC T+ S+ + P R R Sbjct: 1056 WCRHCGA--------TSAGLRCEWQNNYTQCAPCASLSSCPVCYRNYR 1095
>UXUA2_BACHD (Q9KEZ3) Mannonate dehydratase 2 (EC 4.2.1.8) (D-mannonate| hydrolase 2) Length = 345 Score = 28.5 bits (62), Expect = 5.0 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = -2 Query: 198 GGDGGAPTLRCRSTRVTRRQSAHRTPELDPAGGATMPAPQCLHHDVILGGPVLP 37 GG G R+ + T +S + L AG M A +HD+ GP+ P Sbjct: 256 GGQGRIHFAHARNIKRTGPRSFQESAHLSEAGSVNMVAMLKAYHDIGFTGPLRP 309
>TRI32_MOUSE (Q8CH72) Tripartite motif protein 32 (EC 6.3.2.-)| Length = 655 Score = 28.1 bits (61), Expect = 6.5 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2 Query: 71 CRHCGAGIVAPPAGSSSGVRCALCRRVTRV 160 CR C ++A S +GVRC C ++TR+ Sbjct: 45 CRQCLEKLLA---SSINGVRCPFCSKITRI 71
>VE2_HPV17 (P36785) Regulatory protein E2| Length = 452 Score = 28.1 bits (61), Expect = 6.5 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -2 Query: 201 RGGDGGAPTLRCRSTRVTRRQSAHRTPEL-DPAGGATMP 88 RGG G PT R +S ++R +S R+ AGG P Sbjct: 303 RGGSSGGPTTRSQSRSLSRSRSRSRSRSRGSSAGGGVAP 341
>TRI32_HUMAN (Q13049) Tripartite motif protein 32 (EC 6.3.2.-) (Zinc-finger| protein HT2A) (72 kDa Tat-interacting protein) Length = 653 Score = 28.1 bits (61), Expect = 6.5 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2 Query: 71 CRHCGAGIVAPPAGSSSGVRCALCRRVTRV 160 CR C ++A S +GVRC C ++TR+ Sbjct: 44 CRQCLEKLLA---SSINGVRCPFCSKITRI 70
>ANK2_HUMAN (Q01484) Ankyrin-2 (Brain ankyrin) (Ankyrin-B) (Ankyrin,| nonerythroid) Length = 3924 Score = 28.1 bits (61), Expect = 6.5 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = +2 Query: 71 CRHCGAGIVAPPAGSSSGVRCALCRRVT--RVERHRSVGAPP 190 CRH G I+ PP +C RVT V+RHR PP Sbjct: 984 CRHNGLRIIIPPR------KCTAPTRVTCRLVKRHRLATMPP 1019
>FPG_DESVH (Q726D5) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)| (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM) Length = 364 Score = 27.7 bits (60), Expect = 8.5 Identities = 14/42 (33%), Positives = 17/42 (40%) Frame = +2 Query: 23 SIRGMGNTGPPRMTSWCRHCGAGIVAPPAGSSSGVRCALCRR 148 S R G G P CRHCG + + V C C+R Sbjct: 328 SFRVYGRGGQP-----CRHCGTTLATAQVAGRTTVFCPQCQR 364
>HHEX_HUMAN (Q03014) Homeobox protein PRH (Hematopoietically expressed| homeobox) (Homeobox protein HEX) Length = 270 Score = 27.7 bits (60), Expect = 8.5 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%) Frame = -2 Query: 183 APTLRCRSTRVTRRQSAHRTPELDPAGGATMPAPQCLHHDVI----------LGGPVLPM 34 APTL ++ T S +RTP +P T P HH GGP+ P Sbjct: 48 APTLPSPNSSFTSLVSPYRTPVYEP----TPIHPAFSHHSAAALAAAYGPGGFGGPLYPF 103 Query: 33 PR 28 PR Sbjct: 104 PR 105
>EPHB4_MOUSE (P54761) Ephrin type-B receptor 4 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor MDK-2) (Developmental kinase 2) (Tyrosine kinase MYK-1) Length = 987 Score = 27.7 bits (60), Expect = 8.5 Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 17/63 (26%) Frame = +2 Query: 71 CRHCGAGIVAPPAGSSSGVRC-------------ALCR----RVTRVERHRSVGAPPSPP 199 CR CG G P G S + C LCR R R PPS P Sbjct: 268 CRACGQGTFKPQIGDESCLPCPANSHSNNIGSPVCLCRIGYYRARSDPRSSPCTTPPSAP 327 Query: 200 RTV 208 R+V Sbjct: 328 RSV 330
>ZN759_MOUSE (Q80VM4) Zinc finger protein 579| Length = 562 Score = 27.7 bits (60), Expect = 8.5 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 12/69 (17%) Frame = +2 Query: 29 RGMGNTGPPRMTSWCRHCGAGIVAP-----PAGSSSGVR---CALC----RRVTRVERHR 172 RG G G PR C CG P S SG+R C LC RR + RH Sbjct: 34 RGRGGAGAPRAPLPCPTCGRLFRFPYYLSRHRLSHSGLRPHACPLCPKAFRRPAHLSRHL 93 Query: 173 SVGAPPSPP 199 G P PP Sbjct: 94 R-GHGPQPP 101
>ZN759_HUMAN (Q8NAF0) Zinc finger protein 579| Length = 562 Score = 27.7 bits (60), Expect = 8.5 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 12/69 (17%) Frame = +2 Query: 29 RGMGNTGPPRMTSWCRHCGAGIVAP-----PAGSSSGVR---CALC----RRVTRVERHR 172 RG G G PR C CG P S SG+R C LC RR + RH Sbjct: 32 RGRGGAGAPRAPLPCPTCGRLFRFPYYLSRHRLSHSGLRPHACPLCPKAFRRPAHLSRHL 91 Query: 173 SVGAPPSPP 199 G P PP Sbjct: 92 R-GHGPQPP 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,598,612 Number of Sequences: 219361 Number of extensions: 397334 Number of successful extensions: 1530 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1490 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1529 length of database: 80,573,946 effective HSP length: 47 effective length of database: 70,263,979 effective search space used: 1686335496 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
