>ref|XM_470796.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1110

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 128 cggtgcgcgctctgccgccgcgtgacgcgcgtcgagcg 165
           ||||||||||||||||||  ||||||||||||||||||
Sbjct: 88  cggtgcgcgctctgccgcgccgtgacgcgcgtcgagcg 125

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 128      cggtgcgcgctctgccgccgcgtgacgcgcgtcgagcg 165
                ||||||||||||||||||  ||||||||||||||||||
Sbjct: 15425015 cggtgcgcgctctgccgcgccgtgacgcgcgtcgagcg 15424978



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 124      cgtccggtgcgcgctctgccgccgcgtgacgcgcgtcgagcggc 167
                |||||||||||||||||||| |||| ||||| ||||||| ||||
Sbjct: 15402962 cgtccggtgcgcgctctgccaccgcatgacgtgcgtcgaccggc 15402919



 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 181      cgcgcccccgtcgccgccgcggacgg 206
                |||||| |||||||||||||||||||
Sbjct: 12627832 cgcgccgccgtcgccgccgcggacgg 12627857

>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete
             sequence
          Length = 164705

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 128   cggtgcgcgctctgccgccgcgtgacgcgcgtcgagcg 165
             ||||||||||||||||||  ||||||||||||||||||
Sbjct: 76511 cggtgcgcgctctgccgcgccgtgacgcgcgtcgagcg 76548



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 124   cgtccggtgcgcgctctgccgccgcgtgacgcgcgtcgagcggc 167
             |||||||||||||||||||| |||| ||||| ||||||| ||||
Sbjct: 98564 cgtccggtgcgcgctctgccaccgcatgacgtgcgtcgaccggc 98607

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 128      cggtgcgcgctctgccgccgcgtgacgcgcgtcgagcg 165
                ||||||||||||||||||  ||||||||||||||||||
Sbjct: 15419549 cggtgcgcgctctgccgcgccgtgacgcgcgtcgagcg 15419512



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 124      cgtccggtgcgcgctctgccgccgcgtgacgcgcgtcgagcggc 167
                |||||||||||||||||||| |||| ||||| ||||||| ||||
Sbjct: 15397496 cgtccggtgcgcgctctgccaccgcatgacgtgcgtcgaccggc 15397453



 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 181      cgcgcccccgtcgccgccgcggacgg 206
                |||||| |||||||||||||||||||
Sbjct: 12624595 cgcgccgccgtcgccgccgcggacgg 12624620

>ref|XM_470792.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1203

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 124 cgtccggtgcgcgctctgccgccgcgtgacgcgcgtcgagcggc 167
           |||||||||||||||||||| |||| ||||| ||||||| ||||
Sbjct: 150 cgtccggtgcgcgctctgccaccgcatgacgtgcgtcgaccggc 193

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 2      gtcagctaccacgagctcacctcc 25
              ||||||||||||||||||||||||
Sbjct: 977195 gtcagctaccacgagctcacctcc 977218

>gb|AF377338.1| Myxococcus xanthus putative sensory histidine kinase and
            serine/threonine kinase associate protein KapA (kapA)
            genes, complete cds; and unknown genes
          Length = 5439

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 182  gcgcccccgtcgccgccgcggacg 205
            ||||||||||||||||||||||||
Sbjct: 4538 gcgcccccgtcgccgccgcggacg 4515

>dbj|AP003810.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1119_A04
          Length = 128906

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 2     gtcagctaccacgagctcacctcc 25
             ||||||||||||||||||||||||
Sbjct: 81542 gtcagctaccacgagctcacctcc 81565

>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 188   ccgtcgccgccgcggacggtgcgctct 214
             |||||||||||||||||| ||||||||
Sbjct: 22299 ccgtcgccgccgcggacgatgcgctct 22325

>emb|AJ582817.3| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster, strain
             ATCC12853
          Length = 47050

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 178   gggcgcgcccccgtcgccgccg 199
             ||||||||||||||||||||||
Sbjct: 21471 gggcgcgcccccgtcgccgccg 21492

>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 181   cgcgcccccgtcgccgccgcggacgg 206
             |||||| |||||||||||||||||||
Sbjct: 49157 cgcgccgccgtcgccgccgcggacgg 49132

>dbj|AB164642.1| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster,
            complete cds
          Length = 25467

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 178  gggcgcgcccccgtcgccgccg 199
            ||||||||||||||||||||||
Sbjct: 4180 gggcgcgcccccgtcgccgccg 4201

>emb|AJ628422.2| Streptomyces kanamyceticus partial kanamycin biosynthesis gene cluster,
             strain DSM 40500
          Length = 41576

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 178   gggcgcgcccccgtcgccgccg 199
             ||||||||||||||||||||||
Sbjct: 18244 gggcgcgcccccgtcgccgccg 18265

>gb|DQ278492.1| Lysobacter lactamgenus nonribosomal peptide synthetase - polyketide
            synthase hybrid (cpbI) gene, complete cds
          Length = 15150

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 65   tcgtggtgcaggcactgcggcgcggg 90
            |||||||||||||||||| |||||||
Sbjct: 1640 tcgtggtgcaggcactgctgcgcggg 1615

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 162   agcggcaccgcagcgtgggcgcgcc 186
             |||||||||||||||| ||||||||
Sbjct: 41700 agcggcaccgcagcgttggcgcgcc 41724

>ref|XM_512530.1| PREDICTED: Pan troglodytes similar to GEM interacting protein;
           Gem-interacting protein (LOC455880), mRNA
          Length = 2748

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ggtgcaggcactgcggcgcg 88
           ||||||||||||||||||||
Sbjct: 744 ggtgcaggcactgcggcgcg 763

>gb|AC166162.6| Mus musculus BAC clone RP23-436K10 from chromosome 6, complete sequence
          Length = 181038

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    agctcacctccatccgtggc 34
             ||||||||||||||||||||
Sbjct: 87465 agctcacctccatccgtggc 87446

>ref|XM_364888.1| Magnaporthe grisea 70-15 hypothetical protein (MG09733.4) partial
           mRNA
          Length = 969

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 gccgcgtgacgcgcgtcgag 163
           ||||||||||||||||||||
Sbjct: 326 gccgcgtgacgcgcgtcgag 345

>ref|NM_016573.2| Homo sapiens GEM interacting protein (GMIP), mRNA
          Length = 3532

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ggtgcaggcactgcggcgcg 88
           ||||||||||||||||||||
Sbjct: 744 ggtgcaggcactgcggcgcg 763

>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes
          Length = 37000

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 97    ggcgccgccggccgggtcgagctc 120
             ||||||||||||||| ||||||||
Sbjct: 10560 ggcgccgccggccggttcgagctc 10583

>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome
          Length = 135301

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 97    ggcgccgccggccgggtcgagctc 120
             ||||||||||||||| ||||||||
Sbjct: 41360 ggcgccgccggccggttcgagctc 41383

>gb|BC032057.1| Homo sapiens GEM interacting protein, mRNA (cDNA clone
           IMAGE:5174902)
          Length = 2239

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ggtgcaggcactgcggcgcg 88
           ||||||||||||||||||||
Sbjct: 702 ggtgcaggcactgcggcgcg 721

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 48      ggccgccgaggatgacgtcg 67
               ||||||||||||||||||||
Sbjct: 4042943 ggccgccgaggatgacgtcg 4042962

>gb|AC011458.7| Homo sapiens chromosome 19 clone CTC-412M14, complete sequence
          Length = 105238

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    ggtgcaggcactgcggcgcg 88
             ||||||||||||||||||||
Sbjct: 17676 ggtgcaggcactgcggcgcg 17657

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 72      gcaggcactgcggcgcgggc 91
               ||||||||||||||||||||
Sbjct: 2018734 gcaggcactgcggcgcgggc 2018715

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 48      ggccgccgaggatgacgtcg 67
               ||||||||||||||||||||
Sbjct: 1116277 ggccgccgaggatgacgtcg 1116296

>gb|AC134529.6| Mus musculus BAC clone RP24-503A2 from chromosome 6, complete sequence
          Length = 166392

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     agctcacctccatccgtggc 34
              ||||||||||||||||||||
Sbjct: 158171 agctcacctccatccgtggc 158152

>gb|AF132541.1| Homo sapiens Gem-interacting protein (GMIP) mRNA, complete cds
          Length = 3480

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ggtgcaggcactgcggcgcg 88
           ||||||||||||||||||||
Sbjct: 706 ggtgcaggcactgcggcgcg 725


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,316,059
Number of Sequences: 3902068
Number of extensions: 1316059
Number of successful extensions: 111492
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109593
Number of HSP's gapped (non-prelim): 1899
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)