ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast69b10 |
|---|---|
| Clone Library Name | barley_pub |
>ALKK_PSEOL (Q00594) Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-)| (Medium-chain acyl-CoA synthetase) Length = 546 Score = 41.6 bits (96), Expect = 5e-04 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +2 Query: 50 TYLWTLPMFHANGWSFPWGMAVVGGTNVCL-RRVDAAEVYDTIARRGVTHLCGAPVVLNM 226 T L +PMFH N W P+ A+VG V +D A + IA GV+ G PVV Sbjct: 222 TILPVVPMFHVNAWGTPYSAAMVGAKLVLPGPALDGASLSKLIASEGVSIALGVPVVWQG 281 Query: 227 LANAPEG 247 L A G Sbjct: 282 LLAAQAG 288
>MENE_BACSU (P23971) 2-succinylbenzoate--CoA ligase (EC 6.2.1.26) (OSB-CoA| synthetase) (o-succinylbenzoyl-CoA synthetase) Length = 486 Score = 37.4 bits (85), Expect = 0.010 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Frame = +2 Query: 11 MDSLVSWSVPEQPTYLWTLPMFHANGWSFPWGMAVVGGTNVCLRRVDAAEVYDTIARRGV 190 + S ++ + EQ +L LP+FH +G S + + G T V +R ++V +I R V Sbjct: 174 VSSALNLGITEQDRWLIALPLFHISGLSALFKSVIYGMTVVLHQRFSVSDVLHSINRHEV 233 Query: 191 THLCGAPVVLNMLA----NAPEGVR 253 T + +L L PE +R Sbjct: 234 TMISAVQTMLASLLEETNRCPESIR 258
>SDC3_CHICK (P26261) Syndecan-3 precursor| Length = 405 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -2 Query: 222 LSTTGAPQRCVTPRRAMVS*TSAASTRRRQTLVPPTTAIP 103 +STT A + T +R + + A+T R TL PTT+IP Sbjct: 165 ISTTVATSKPTTTQRFLPPFVTKAATTRATTLETPTTSIP 204
>TGIF_PANTR (Q5IS58) 5'-TG-3'-interacting factor (Homeobox protein TGIF)| Length = 401 Score = 29.3 bits (64), Expect = 2.7 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 6/90 (6%) Frame = -2 Query: 261 SGLRTPSGALASMLSTTGAPQRCVTPRRAMVS*TSAASTRRRQTLVPPTTAIPHGKLQ-- 88 S L TPS L S + P RC PR + A RR P +P Q Sbjct: 66 SSLATPSALLGSSCAPPPPPARCPQPRALSPELGTKAGPRR-----PHRWELPRSPSQGA 120 Query: 87 ----PLAWNMGSVHRYVGCSGTDQETSESM 10 P M ++ V SG++ E +SM Sbjct: 121 QGPAPRRRLMETMKGIVAASGSETEDEDSM 150
>THRC_MYCLE (P45837) Probable threonine synthase (EC 4.2.3.1)| Length = 360 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 279 ICTFTGSGLRTPSGALASMLSTTGAP 202 +CT TG+GL+ P AL M S + P Sbjct: 322 VCTITGNGLKDPDTALKDMPSVSPVP 347
>THRC_MYCTU (P66902) Probable threonine synthase (EC 4.2.3.1)| Length = 360 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 279 ICTFTGSGLRTPSGALASMLSTTGAP 202 +CT TG+GL+ P AL M S + P Sbjct: 322 VCTVTGNGLKDPDTALKDMPSVSPVP 347
>THRC_MYCBO (P66903) Probable threonine synthase (EC 4.2.3.1)| Length = 360 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 279 ICTFTGSGLRTPSGALASMLSTTGAP 202 +CT TG+GL+ P AL M S + P Sbjct: 322 VCTVTGNGLKDPDTALKDMPSVSPVP 347
>TGIF_HUMAN (Q15583) 5'-TG-3'-interacting factor (Homeobox protein TGIF)| Length = 401 Score = 28.1 bits (61), Expect = 6.0 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 6/90 (6%) Frame = -2 Query: 261 SGLRTPSGALASMLSTTGAPQRCVTPRRAMVS*TSAASTRRRQTLVPPTTAIPHGKLQ-- 88 S L TPS L S + P RC PR + A RR P +P Q Sbjct: 66 SSLATPSALLGSSCAPPPPPARCPQPRALSQELGTKAGPRR-----PHRWELPRSPSQGA 120 Query: 87 ----PLAWNMGSVHRYVGCSGTDQETSESM 10 P + ++ V SG++ E +SM Sbjct: 121 QGPAPRRRLLETMKGIVAASGSETEDEDSM 150
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 28.1 bits (61), Expect = 6.0 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = -2 Query: 249 TPSGALASMLSTTGAPQRCVTPRRAMVS*TSAASTRRRQ--TLVPPTTAIPHGKLQPL 82 TPS A+ + G+P P + + AA T +Q TL PP PH LQP+ Sbjct: 767 TPS---ATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPM 821
>S27A5_MOUSE (Q4LDG0) Bile acyl-CoA synthetase (EC 6.2.1.7) (BACS) (Bile acid| CoA ligase) (BA-CoA ligase) (BAL) (Cholate--CoA ligase) (Very long chain acyl-CoA synthetase-related protein) (VLACS-related) (VLACSR) (Fatty acid transport protein 5) (FATP-5) Length = 689 Score = 28.1 bits (61), Expect = 6.0 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = +2 Query: 65 LPMFHANGWSFPW-GMAVVGGTNVCLRRVDAAEVYDTIARRGVTHLCGAPVVLNMLANAP 241 LP++H G + G VG T V + A+ + + GVT + +L L N P Sbjct: 333 LPLYHTIGLVLGFLGCLQVGATCVLAPKFSASRFWAECRQHGVTVILYVGEILRYLCNVP 392 Query: 242 E 244 E Sbjct: 393 E 393
>RUNX3_HUMAN (Q13761) Runt-related transcription factor 3 (Core-binding factor,| alpha 3 subunit) (CBF-alpha 3) (Acute myeloid leukemia 2 protein) (Oncogene AML-2) (Polyomavirus enhancer-binding protein 2 alpha C subunit) (PEBP2-alpha C) (PEA2-alpha C) (SL Length = 415 Score = 27.7 bits (60), Expect = 7.9 Identities = 22/77 (28%), Positives = 24/77 (31%) Frame = -2 Query: 249 TPSGALASMLSTTGAPQRCVTPRRAMVS*TSAASTRRRQTLVPPTTAIPHGKLQPLAWNM 70 TPSG S LS G P A S L PP P + P N Sbjct: 283 TPSGTSISSLSVAGMP---------------ATSRFHHTYLPPPYPGAPQNQSGPFQANP 327 Query: 69 GSVHRYVGCSGTDQETS 19 H Y G S + S Sbjct: 328 SPYHLYYGTSSGSYQFS 344 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,285,755 Number of Sequences: 219361 Number of extensions: 493828 Number of successful extensions: 2010 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1968 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2009 length of database: 80,573,946 effective HSP length: 70 effective length of database: 65,218,676 effective search space used: 1565248224 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
