Clone Information

BLAST Search Result

Clone Name	bast69b08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PGMB_LACLA (P71447) Beta-phosphoglucomutase (EC 5.4.2.6) (Beta-PGM)	42	8e-04
2	P1254_THEMA (Q9X0Y1) Phosphorylated carbohydrates phosphatase TM...	39	0.004
3	CBBY_RHOSH (P95649) Protein cbbY	39	0.007
4	CBBYP_RALEU (Q04541) Protein cbbY, plasmid	38	0.012
5	CBBYC_RALEU (P40119) Protein cbbY, chromosomal	38	0.012
6	Y488_HAEIN (P44004) Hypothetical protein HI0488	36	0.046
7	YQAB_ECOLI (P77475) Phosphatase yqaB (EC 3.1.3.-)	35	0.079
8	PGMB_ECOLI (P77366) Putative beta-phosphoglucomutase (EC 5.4.2.6...	35	0.079
9	GPH_AQUAE (O67359) Phosphoglycolate phosphatase (EC 3.1.3.18) (P...	34	0.13
10	YIEH_ECOLI (P31467) Phosphatase yieH (EC 3.1.3.-)	34	0.18
11	GPH_NEIMA (Q9JTP5) Phosphoglycolate phosphatase (EC 3.1.3.18) (P...	34	0.18
12	GPH_XANCP (Q8P8H3) Phosphoglycolate phosphatase (EC 3.1.3.18) (P...	33	0.23
13	CBBY_RHOCA (O33513) Protein cbbY	33	0.23
14	PGMB_BACSU (O06995) Putative beta-phosphoglucomutase (EC 5.4.2.6...	33	0.23
15	GPH2_PSEAE (Q9HZ62) Phosphoglycolate phosphatase 2 (EC 3.1.3.18)...	33	0.23
16	GPH_XYLFA (Q9PAM6) Phosphoglycolate phosphatase (EC 3.1.3.18) (P...	33	0.30
17	GPH_XYLFT (Q87BG6) Phosphoglycolate phosphatase (EC 3.1.3.18) (P...	33	0.39
18	AATF_HUMAN (Q9NY61) Protein AATF (Apoptosis-antagonizing transcr...	32	0.51
19	POLG_HCVSA (O91936) Genome polyprotein [Contains: Core protein p...	32	0.87
20	PPAX_CLOPE (Q8XIY6) Putative pyrophosphatase ppaX (EC 3.6.1.1)	31	1.1
21	IRS1_HCMVA (P09715) Protein IRS1 (HQRF1)	30	1.9
22	PPAX_OCEIH (Q8ENK3) Pyrophosphatase ppaX (EC 3.6.1.1)	30	1.9
23	TRS1_HCMVA (P09695) Protein HHLF1	30	1.9
24	P845_THEAC (Q9HJW8) Phosphatase Ta0845 (EC 3.1.3.-)	30	1.9
25	MUTS2_HALSA (Q9HSL6) DNA mismatch repair protein mutS 2	30	1.9
26	ALG2_MOUSE (Q9DBE8) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1...	30	2.5
27	GPHC_RALEU (P40852) Phosphoglycolate phosphatase, chromosomal (E...	30	2.5
28	SYFB_PHOPR (Q6LQ73) Phenylalanyl-tRNA synthetase beta chain (EC ...	30	3.3
29	PLU_DROME (P42570) DNA replication inhibitor plutonium	30	3.3
30	RS13_HALMA (Q00861) 30S ribosomal protein S13P (HmaS13)	30	3.3
31	Y2257_MYCBO (P68910) Hypothetical protein Mb2257	30	3.3
32	Y2232_MYCTU (P68911) Hypothetical protein Rv2232/MT2292	30	3.3
33	RS13_HALSA (Q9V2W4) 30S ribosomal protein S13P (HS13)	29	4.3
34	GPH_RHOCA (O33512) Phosphoglycolate phosphatase (EC 3.1.3.18) (P...	29	4.3
35	ALG2_HUMAN (Q9H553) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1...	29	5.7
36	GPHP_RALEU (P40853) Phosphoglycolate phosphatase, plasmid (EC 3....	29	5.7
37	YHCW_BACSU (P54607) Hypothetical protein yhcW	29	5.7
38	POLG_HCVEV (O39928) Genome polyprotein [Contains: Core protein p...	28	7.4
39	EFGM_DROME (Q9VM33) Probable elongation factor G, mitochondrial ...	28	7.4
40	PUNA_BACSU (P46354) Purine nucleoside phosphorylase 1 (EC 2.4.2....	28	7.4
41	FBN3_HUMAN (Q75N90) Fibrillin-3 precursor	28	7.4
42	YNIC_ECOLI (P77247) Phosphatase yniC (EC 3.1.3.-)	28	9.7
43	YNIC_ECO57 (Q7ADF8) Phosphatase yniC (EC 3.1.3.-)	28	9.7
44	DHH1_NEUCR (Q7S5D9) ATP-dependent RNA helicase dhh-1 (EC 3.6.1.-)	28	9.7
45	SYI_CAMJR (Q5HU41) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	28	9.7
46	SYI_CAMJE (P41257) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	28	9.7
47	PPAX_LISIN (Q928B2) Pyrophosphatase ppaX (EC 3.6.1.1)	28	9.7
48	GPH_SYNP7 (Q55039) Phosphoglycolate phosphatase (EC 3.1.3.18) (P...	28	9.7

>PGMB_LACLA (P71447) Beta-phosphoglucomutase (EC 5.4.2.6) (Beta-PGM)|
          Length = 221

 Score = 41.6 bits (96), Expect = 8e-04
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = +2

Query: 143 EAILFDIDGTLCDSDPFHFRAFRELLQEVGFN 238
           +A+LFD+DG + D+  +HFRA++ L +E+G N
Sbjct: 3   KAVLFDLDGVITDTAEYHFRAWKALAEEIGIN 34

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>P1254_THEMA (Q9X0Y1) Phosphorylated carbohydrates phosphatase TM1254 (EC|
           3.1.3.-)
          Length = 216

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 16/43 (37%), Positives = 29/43 (67%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVPITEEFY 268
           +EA++FD+DG L D++P +F A+R + +    + G P TE+ +
Sbjct: 1   MEAVIFDMDGVLMDTEPLYFEAYRRVAE----SYGKPYTEDLH 39

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>CBBY_RHOSH (P95649) Protein cbbY|
          Length = 230

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVG 232
           +EAILFD+DGTL +++  H RAF E    +G
Sbjct: 2   IEAILFDVDGTLAETEELHRRAFNETFAALG 32

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>CBBYP_RALEU (Q04541) Protein cbbY, plasmid|
          Length = 254

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVGFN 238
           ++A++FD+DGTL D++  H +AF     EVG +
Sbjct: 1   MQALIFDVDGTLADTETAHLQAFNAAFAEVGLD 33

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>CBBYC_RALEU (P40119) Protein cbbY, chromosomal|
          Length = 254

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVGFN 238
           ++A++FD+DGTL D++  H +AF     EVG +
Sbjct: 1   MQALIFDVDGTLADTESAHLQAFNAAFAEVGLD 33

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>Y488_HAEIN (P44004) Hypothetical protein HI0488|
          Length = 200

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 137 PLEAILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVPITEEFYSANISGWHNDALAGAL 316
           P E ++FD+DGTL D+ P H +A+  + ++ G+     I   F  A +     + +  A 
Sbjct: 9   PYEGLIFDMDGTLIDTMPVHAQAWTMVGKKFGYEFDFQIMYNFGGATVRTIAGEMMKAAN 68

Query: 317 FP 322
            P
Sbjct: 69  MP 70

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>YQAB_ECOLI (P77475) Phosphatase yqaB (EC 3.1.3.-)|
          Length = 188

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +2

Query: 149 ILFDIDGTLCDSDPFHFRAFRELLQEVG 232
           ++FD+DGT+ D++P H +A+RE+L   G
Sbjct: 8   LIFDMDGTILDTEPTHRKAWREVLGHYG 35

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>PGMB_ECOLI (P77366) Putative beta-phosphoglucomutase (EC 5.4.2.6) (Beta-PGM)|
          Length = 219

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVGFN 238
           L+ ++FD+DG + D+   HF+A++++  E+G +
Sbjct: 3   LQGVIFDLDGVITDTAHLHFQAWQQIAAEIGIS 35

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>GPH_AQUAE (O67359) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 213

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 24/81 (29%), Positives = 39/81 (48%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVPITEEFYSANISGWHNDALAGALF 319
           +  ILFD+DGTL DS      A  + L+E+G        EE+Y  N++ +    + G + 
Sbjct: 1   MRVILFDLDGTLIDSAKDIALALEKTLKELGL-------EEYYPDNVTKY----IGGGVR 49

Query: 320 PELDHAKAMEFMDRKEALFRK 382
             L+     +F +    +FRK
Sbjct: 50  ALLEKVLKDKFREEYVEVFRK 70

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>YIEH_ECOLI (P31467) Phosphatase yieH (EC 3.1.3.-)|
          Length = 221

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 131 LAPLEAILFDIDGTLCDSDPFHFRAFRELLQEVG 232
           ++ +EA+ FD DGTL DS+    RA+  + QE G
Sbjct: 1   MSRIEAVFFDCDGTLVDSEVICSRAYVTMFQEFG 34

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>GPH_NEIMA (Q9JTP5) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 235

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVG 232
           ++A+ FD+DGTLCDS P    A   +L+++G
Sbjct: 8   VQAVAFDLDGTLCDSVPDLAAAAEAMLEQLG 38

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>GPH_XANCP (Q8P8H3) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 221

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +2

Query: 146 AILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVPITEEFYSANISGWHNDALAGALFPE 325
           A+LFD+DGTL DS P        +L E     G+P         +    + A+    F  
Sbjct: 6   AVLFDLDGTLLDSAPDMLATVNAMLSE----RGLPCITLAQLRPVVSKGSRAMLAVAFAH 61

Query: 326 LD----HAKAMEFMDRKEAL 373
           LD     A   EF+ R EAL
Sbjct: 62  LDAAAREALVPEFLKRYEAL 81

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>CBBY_RHOCA (O33513) Protein cbbY|
          Length = 227

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVGFN 238
           L+A++FD+DGTL +++  H +AF E     G +
Sbjct: 3   LKALIFDVDGTLAETEEVHRQAFNETFAAQGLD 35

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>PGMB_BACSU (O06995) Putative beta-phosphoglucomutase (EC 5.4.2.6) (Beta-PGM)|
          Length = 226

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVGFN---------NGVPITEEFYSANISGWH 292
           ++A++FD+DG + D+  +HF A++ + +++             G+   E   S  I G  
Sbjct: 1   MKAVIFDLDGVITDTAEYHFLAWKHIAEQIDIPFDRDMNERLKGISREESLESILIFGGA 60

Query: 293 NDALAGALFPELDHAKAMEF 352
                 A   EL H K  ++
Sbjct: 61  ETKYTNAEKQELMHRKNRDY 80

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>GPH2_PSEAE (Q9HZ62) Phosphoglycolate phosphatase 2 (EC 3.1.3.18) (PGPase2)|
           (PGP 2)
          Length = 226

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVPITEEFYSANISGWHNDALAGALF 319
           L+A+LFD+DGTL D+ P     F  + Q +   +G+P  +E    ++      A+  A F
Sbjct: 6   LKAVLFDMDGTLLDTAP----DFIAITQAMRAAHGLPPVDEQRVRDVVSGGARAMVAAAF 61

Query: 320 ------PELDHAKAMEFMDR 361
                 PE++  +  EF+DR
Sbjct: 62  GLSLDSPEVEPLR-QEFLDR 80

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>GPH_XYLFA (Q9PAM6) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 229

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 32/79 (40%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +2

Query: 149 ILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVPITEEFYSANISGWHNDALAGALFPEL 328
           +LFD+DGTL DS P        +L   G     PIT       IS      LA A FPEL
Sbjct: 15  VLFDLDGTLLDSAPDMLATANAMLAARG---RAPITLAQLRPVISIGTFRILAVA-FPEL 70

Query: 329 DHAKAM----EFMDRKEAL 373
           D A       EF+ R EAL
Sbjct: 71  DAAAIQGLIPEFLQRYEAL 89

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>GPH_XYLFT (Q87BG6) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 229

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 31/79 (39%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +2

Query: 149 ILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVPITEEFYSANISGWHNDALAGALFPEL 328
           +LFD+DGTL DS P        +L   G     PIT       IS      +A A FPEL
Sbjct: 15  VLFDLDGTLLDSAPDMLATANAMLAARG---RAPITLMQLRPVISRGTFRIIAVA-FPEL 70

Query: 329 DHAKAM----EFMDRKEAL 373
           D A       EF+ R EAL
Sbjct: 71  DAAAIQGLIPEFLQRYEAL 89

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>AATF_HUMAN (Q9NY61) Protein AATF (Apoptosis-antagonizing transcription factor)|
           (Rb-binding protein Che-1)
          Length = 560

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = +2

Query: 50  KNRTARAYRRVTGASDMSAA-------GDRDLRELAPLEAILFDIDGTLCDSDPFHFRAF 208
           + +T R+  RV G  + +A        G+ ++   AP  A L D+D  + D D F+ +  
Sbjct: 409 RTQTKRSVYRVLGKPEPAAQPVPESLPGEPEILPQAPANAHLKDLDEEIFDDDDFYHQLL 468

Query: 209 RELLQ 223
           REL++
Sbjct: 469 RELIE 473

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>POLG_HCVSA (O91936) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3013

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
 Frame = -2

Query: 388  RQLSEQGFLAIHELHGLGVVELREQRAGEGVVVPSADVCAVEFLGDGDSIVETNLLQQLX 209
            +QL+ QG  A+    GL V  +    A   VVV S D     F GD DS+++ N      
Sbjct: 1405 KQLTSQGVNAVAYYRGLDVAVIP---ATGDVVVCSTDALMTGFTGDFDSVIDCN-TTVTQ 1460

Query: 208  XXXXXXXXXXXXXXVDVEQDRLERRQLPQIPVAGGRHVRR---SGDPPVGARGAVLVSAG 38
                            V QD + R Q       G   + R   SG+ P G   +V++   
Sbjct: 1461 TVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRHGIYRYVSSGERPSGIFDSVVLCEC 1520

Query: 37   AQAGDA 20
              AG A
Sbjct: 1521 YDAGCA 1526

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>PPAX_CLOPE (Q8XIY6) Putative pyrophosphatase ppaX (EC 3.6.1.1)|
          Length = 214

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELL----------QEVGFNNGVPITEEFYS 271
           ++A+LFD+DGTL +++    ++F+             +E+  N G P+ E F S
Sbjct: 2   IKAVLFDLDGTLINTNDLILKSFKHTFKTMLDLEPSEEEITMNYGRPLQEIFKS 55

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>IRS1_HCMVA (P09715) Protein IRS1 (HQRF1)|
          Length = 846

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 71  YRRVTGASDMSAAGDRDLRELAPLEAILFDIDGTLCDSDP 190
           Y RVT  S M+  G  DLR+L+P +A +  +   + + DP
Sbjct: 145 YARVTPRSQMNGVGATDLRQLSPRDAWIVLVATVVHEVDP 184

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>PPAX_OCEIH (Q8ENK3) Pyrophosphatase ppaX (EC 3.6.1.1)|
          Length = 214

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVGFN---------NGVPITEEF 265
           +  ILFD+DGTL D++     +F    +E   N         NG P+ + F
Sbjct: 3   IRTILFDLDGTLIDTNTLIKASFEHTFKEYNLNFSNEEILKFNGPPLVDTF 53

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>TRS1_HCMVA (P09695) Protein HHLF1|
          Length = 788

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 71  YRRVTGASDMSAAGDRDLRELAPLEAILFDIDGTLCDSDP 190
           Y RVT  S M+  G  DLR+L+P +A +  +   + + DP
Sbjct: 145 YARVTPRSQMNGVGATDLRQLSPRDAWIVLVATVVHEVDP 184

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>P845_THEAC (Q9HJW8) Phosphatase Ta0845 (EC 3.1.3.-)|
          Length = 208

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVGFN 238
           ++ ++FD DGTL DS      A+++  Q  G N
Sbjct: 5   IKGVIFDFDGTLLDSVELRITAWKKAFQNFGVN 37

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>MUTS2_HALSA (Q9HSL6) DNA mismatch repair protein mutS 2|
          Length = 863

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 77  RVTGASDMSAAGDRDLRELAPLEAILFDIDGTLCDSDPFHFRAFRELLQEV 229
           R+        A  RDLR LA   A++ ++ G L D+D    ++ RE L ++
Sbjct: 364 RLVSRVSRGRANARDLRALADTLAVVPEVRGLLADADARKLQSLREALDDL 414

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>ALG2_MOUSE (Q9DBE8) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1.-)|
           (GDP-Man:Man(1)GlcNAc(2)-PP-dolichol
           mannosyltransferase)
          Length = 415

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 137 PLEAILFDIDGTLCDSDPFHF 199
           PLE+I+  + G LC+ DP HF
Sbjct: 349 PLESIVHKVTGFLCEPDPVHF 369

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>GPHC_RALEU (P40852) Phosphoglycolate phosphatase, chromosomal (EC 3.1.3.18)|
           (PGPase) (PGP)
          Length = 231

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 137 PLEAILFDIDGTLCDSDPFHFRAFRELLQEVG 232
           P  A+L D+DGTL DS P    A   +L + G
Sbjct: 7   PCTAVLIDLDGTLVDSAPDIVEAANRMLADFG 38

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>SYFB_PHOPR (Q6LQ73) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 812

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +2

Query: 119 DLRELAPLEAILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVPITEEFYSA 274
           D+REL  L  +  D+D T   +D F   + R L +EVG  N   +TE    A
Sbjct: 146 DVRELLELNDVAIDVDLTANRADCF---SIRGLAREVGVLNRADVTEPVIDA 194

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>PLU_DROME (P42570) DNA replication inhibitor plutonium|
          Length = 174

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 433 CAQFLQAVQSLEFSYRQLSEQGFLAIHELHGLGVVELR 320
           C   LQ   +L   + QL  +G      +HGLGV ELR
Sbjct: 111 CVATLQKHSALVAYFTQLDSRGVQETQTVHGLGVAELR 148

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>RS13_HALMA (Q00861) 30S ribosomal protein S13P (HmaS13)|
          Length = 177

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 346 GVHGSQGSPVQKVGGRRTQGTGRPEGTV 429
           GV   +G   QKV G+RT+ TGR EGT+
Sbjct: 132 GVRHKRG---QKVRGQRTKSTGRTEGTI 156

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>Y2257_MYCBO (P68910) Hypothetical protein Mb2257|
          Length = 291

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 143 EAILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVPITEEFYSANISG 286
           + ++FD+DGTL DS      +FR  L  +    G P+ E   + +I G
Sbjct: 80  QLVIFDLDGTLTDSARGIVSSFRHALNHI----GAPVPEGDLATHIVG 123

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>Y2232_MYCTU (P68911) Hypothetical protein Rv2232/MT2292|
          Length = 291

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 143 EAILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVPITEEFYSANISG 286
           + ++FD+DGTL DS      +FR  L  +    G P+ E   + +I G
Sbjct: 80  QLVIFDLDGTLTDSARGIVSSFRHALNHI----GAPVPEGDLATHIVG 123

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>RS13_HALSA (Q9V2W4) 30S ribosomal protein S13P (HS13)|
          Length = 171

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +1

Query: 376 QKVGGRRTQGTGRPEGTV 429
           QKV G+RT+ TGR EGT+
Sbjct: 132 QKVRGQRTKSTGRTEGTI 149

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>GPH_RHOCA (O33512) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 219

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 146 AILFDIDGTLCDSDPFHFRAFRELLQEVGF 235
           A++FD+DGTL DS P   +   ++L+  G+
Sbjct: 4   ALIFDLDGTLIDSAPAIHKVSNDVLRARGY 33

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>ALG2_HUMAN (Q9H553) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1.-)|
           (GDP-Man:Man(1)GlcNAc(2)-PP-dolichol
           mannosyltransferase)
          Length = 416

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 137 PLEAILFDIDGTLCDSDPFHF-RAFRELLQE 226
           PLE+I   + G LC+ DP HF  A  + ++E
Sbjct: 349 PLESIDHSVTGFLCEPDPVHFSEAIEKFIRE 379

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>GPHP_RALEU (P40853) Phosphoglycolate phosphatase, plasmid (EC 3.1.3.18)|
           (PGPase) (PGP)
          Length = 231

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 137 PLEAILFDIDGTLCDSDPFHFRAFRELLQEVG 232
           P  A+L D+DGTL D  P    A   +L ++G
Sbjct: 7   PCTAVLIDLDGTLVDCAPDIVEAANRMLADLG 38

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>YHCW_BACSU (P54607) Hypothetical protein yhcW|
          Length = 220

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVG 232
           ++A++FD DG + D++   +   +E+ +E G
Sbjct: 2   IKALIFDFDGLILDTETHEYEVLQEIFEEHG 32

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>POLG_HCVEV (O39928) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3013

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -2

Query: 388  RQLSEQGFLAIHELHGLGVVELREQRAGEGVVVPSADVCAVEFLGDGDSIVETN 227
            +QL+  G  A+    GL V  +    A   VVV S D     F GD DS+++ N
Sbjct: 1405 KQLTSLGVNAVAYYRGLDVAVIP---ATGDVVVCSTDALMTGFTGDFDSVIDCN 1455

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>EFGM_DROME (Q9VM33) Probable elongation factor G, mitochondrial precursor|
           (mEF-G)
          Length = 745

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 418 QAVQSLEFSYRQLSEQGFLAIHELHGLGVVELREQRAGEGVV 293
           Q V  +E  YR+++E+G L+ H+L G   +  R Q  G  +V
Sbjct: 575 QFVPGVEKGYREMAEKGMLSGHKLSG---IRFRLQDGGHHIV 613

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>PUNA_BACSU (P46354) Purine nucleoside phosphorylase 1 (EC 2.4.2.1) (Purine|
           nucleoside phosphorylase I) (PNP I) (PU-NPase I)
           (Inosine phosphorylase)
          Length = 271

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
 Frame = +2

Query: 95  DMSAAGDRDLRELAPLEAILFDID-------GTLCDSDPFHFRAFRELLQEVGFNN-GVP 250
           DMS+A D+DL  LA  E I  D++        T      +   A    L+ +G +  G+ 
Sbjct: 153 DMSSAYDKDLSSLA--EKIAKDLNIPIQKGVYTAVTGPSYETPAEVRFLRTMGSDAVGMS 210

Query: 251 ITEEFYSANISGWH-------NDALAGALFPELDHAKAMEFMDRKEALFRKL 385
              E   AN +G         ++A AG L   L H + ME  ++ +A F KL
Sbjct: 211 TVPEVIVANHAGMRVLGISCISNAAAGILDQPLSHDEVMEVTEKVKAGFLKL 262

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>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor|
          Length = 2809

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -2

Query: 415  AVQSLEFSYRQL----SEQGFLAIHELHGLGVVELREQRAGEG 299
            A++ LE   R +    +EQGF  +H L G+  ++L  +R G G
Sbjct: 2729 ALEGLEGRIRYVIVRGNEQGFFRMHHLRGVSSLQLGRRRPGPG 2771

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>YNIC_ECOLI (P77247) Phosphatase yniC (EC 3.1.3.-)|
          Length = 222

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 146 AILFDIDGTLCDSDPFHFRAFRELLQEVG 232
           A +FD+DG L DS+P   RA  +++  +G
Sbjct: 9   AAIFDMDGLLIDSEPLWDRAELDVMASLG 37

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>YNIC_ECO57 (Q7ADF8) Phosphatase yniC (EC 3.1.3.-)|
          Length = 222

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 146 AILFDIDGTLCDSDPFHFRAFRELLQEVG 232
           A +FD+DG L DS+P   RA  +++  +G
Sbjct: 9   AAIFDMDGLLIDSEPLWDRAELDVMASLG 37

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>DHH1_NEUCR (Q7S5D9) ATP-dependent RNA helicase dhh-1 (EC 3.6.1.-)|
          Length = 569

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 340 GHGVHGSQGSPVQKVGGRR---TQGTGRPEG 423
           G G  G  G   Q  GG+R   TQG G+P+G
Sbjct: 534 GRGFQGQGGRQNQNYGGQRGPRTQGQGQPQG 564

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>SYI_CAMJR (Q5HU41) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 917

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 25/104 (24%), Positives = 42/104 (40%)
 Frame = +2

Query: 71  YRRVTGASDMSAAGDRDLRELAPLEAILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVP 250
           YR++        A   DL++L   E     ID  +       F+A +E      F  G  
Sbjct: 660 YRKIRNTIRFLLANTNDLKDLEVKEFSF--IDKWILSRATKVFKASKEAFFAYEFAKGFS 717

Query: 251 ITEEFYSANISGWHNDALAGALFPELDHAKAMEFMDRKEALFRK 382
           +   F SA++SG + D     L+ + ++A+  +      AL  K
Sbjct: 718 LLLNFLSADLSGIYLDISKDRLYCDSENAQRRKSAQVAMALIAK 761

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>SYI_CAMJE (P41257) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 917

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 25/104 (24%), Positives = 42/104 (40%)
 Frame = +2

Query: 71  YRRVTGASDMSAAGDRDLRELAPLEAILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVP 250
           YR++        A   DL++L   E     ID  +       F+A +E      F  G  
Sbjct: 660 YRKIRNTIRFLLANTNDLKDLEVKEFSF--IDKWILSRATKVFKASKEAFFAYEFAKGFS 717

Query: 251 ITEEFYSANISGWHNDALAGALFPELDHAKAMEFMDRKEALFRK 382
           +   F SA++SG + D     L+ + ++A+  +      AL  K
Sbjct: 718 LLLNFLSADLSGIYLDISKDRLYCDSENAQRRKSAQVAMALMAK 761

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>PPAX_LISIN (Q928B2) Pyrophosphatase ppaX (EC 3.6.1.1)|
          Length = 217

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQE 226
           +  +LFD+DGTL +++    + F+  LQE
Sbjct: 5   ITTLLFDLDGTLINTNELIIKTFQATLQE 33

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>GPH_SYNP7 (Q55039) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 212

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 140 LEAILFDIDGTLCDSDPFHFRAFRELLQEVGFNNGVPITEEFYSANISGW 289
           ++AI+FD DGTL DS P           + G++   PI E  Y A +  W
Sbjct: 1   MQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYD---PIDERDY-AQLRQW 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.138    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,632,605
Number of Sequences: 219361
Number of extensions: 751248
Number of successful extensions: 3002
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 2933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3001
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result