ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast69a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL662881.10| Mouse DNA sequence from clone RP23-321C9 on chr... 40 1.1
2gb|AC113190.8| Homo sapiens chromosome 15, clone RP11-186H10, co... 40 1.1
3gb|AC104236.2| Homo sapiens chromosome 15, clone RP11-24J19, com... 40 1.1
4gb|AC007773.1|AC007773 Homo sapiens chromosome 19, BAC 275282 (C... 40 1.1
5gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 38 4.2
6emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 38 4.2
7gb|AC090377.15| Homo sapiens chromosome 18, clone RP11-866E20, c... 38 4.2
8dbj|AB197035.2| Selaginella uncinata chloroplast DNA, complete g... 38 4.2
9gb|AC093807.3| Homo sapiens BAC clone RP11-330J16 from 4, comple... 38 4.2
10gb|AC016720.9| Homo sapiens BAC clone RP11-326G23 from 2, comple... 38 4.2
11ref|XM_313430.2| Anopheles gambiae str. PEST ENSANGP00000020211 ... 38 4.2
12ref|XM_313432.2| Anopheles gambiae str. PEST ENSANGP00000022422 ... 38 4.2

>emb|AL662881.10| Mouse DNA sequence from clone RP23-321C9 on chromosome 11 Contains part
             of the gene for a novel protein similar to Tensin Tns,
             complete sequence
          Length = 154959

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    aagctaaccatgtgcagccattgc 45
             |||||||| |||||||||||||||
Sbjct: 69832 aagctaactatgtgcagccattgc 69855



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>gb|AC113190.8| Homo sapiens chromosome 15, clone RP11-186H10, complete sequence
          Length = 161765

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 8    agtgggagggagctaagcta 27
            ||||||||||||||||||||
Sbjct: 3117 agtgggagggagctaagcta 3136



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>gb|AC104236.2| Homo sapiens chromosome 15, clone RP11-24J19, complete sequence
          Length = 160392

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      agtgggagggagctaagcta 27
              ||||||||||||||||||||
Sbjct: 102907 agtgggagggagctaagcta 102926



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>gb|AC007773.1|AC007773 Homo sapiens chromosome 19, BAC 275282 (CIT-B-325L16), complete
             sequence
          Length = 180316

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     agtgggagggagctaagcta 27
             ||||||||||||||||||||
Sbjct: 11392 agtgggagggagctaagcta 11411



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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 42      ttgccatgcgccgacgtgc 60
               |||||||||||||||||||
Sbjct: 1016174 ttgccatgcgccgacgtgc 1016192



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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     gcgccgacgtgcgtcacct 67
              |||||||||||||||||||
Sbjct: 322191 gcgccgacgtgcgtcacct 322173



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>gb|AC090377.15| Homo sapiens chromosome 18, clone RP11-866E20, complete sequence
          Length = 192704

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    tcacctgcccgcccccgtc 80
             |||||||||||||||||||
Sbjct: 89991 tcacctgcccgcccccgtc 90009



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>dbj|AB197035.2| Selaginella uncinata chloroplast DNA, complete genome
          Length = 144170

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    ggagctaagctaaccatgt 34
             |||||||||||||||||||
Sbjct: 56575 ggagctaagctaaccatgt 56557



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>gb|AC093807.3| Homo sapiens BAC clone RP11-330J16 from 4, complete sequence
          Length = 171415

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    taaccatgtgcagccattg 44
             |||||||||||||||||||
Sbjct: 26936 taaccatgtgcagccattg 26918



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>gb|AC016720.9| Homo sapiens BAC clone RP11-326G23 from 2, complete sequence
          Length = 154318

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 66    ctgcccgcccccgtcgcaggggc 88
             |||||||||||| ||||||||||
Sbjct: 97546 ctgcccgcccccatcgcaggggc 97568



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>ref|XM_313430.2| Anopheles gambiae str. PEST ENSANGP00000020211 (ENSANGG00000017722),
            partial mRNA
          Length = 12294

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 58   tgcgtcacctgcccgcccccgtcgcag 84
            |||||||||| |||| |||||||||||
Sbjct: 8674 tgcgtcaccttcccgtccccgtcgcag 8700



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>ref|XM_313432.2| Anopheles gambiae str. PEST ENSANGP00000022422 (ENSANGG00000017722),
            partial mRNA
          Length = 12213

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 58   tgcgtcacctgcccgcccccgtcgcag 84
            |||||||||| |||| |||||||||||
Sbjct: 8986 tgcgtcaccttcccgtccccgtcgcag 9012


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 583,241
Number of Sequences: 3902068
Number of extensions: 583241
Number of successful extensions: 44782
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44740
Number of HSP's gapped (non-prelim): 42
length of query: 96
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 75
effective length of database: 17,151,101,840
effective search space: 1286332638000
effective search space used: 1286332638000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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