ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast69a08 |
|---|---|
| Clone Library Name | barley_pub |
>PRTZ_HORVU (P06293) Protein Z (Z4) (Major endosperm albumin)| Length = 399 Score = 91.7 bits (226), Expect = 5e-19 Identities = 48/85 (56%), Positives = 56/85 (65%) Frame = +3 Query: 6 ATRDQLAATLGAAEKGDAEGLHXXXXXXXXXXXXXXSGAGGPRVAFANGVFVDASLKLKP 185 ATRDQL A LG GDA+ L+ S GGPR+AFANG+FVDASL LKP Sbjct: 58 ATRDQLVAILGDGGAGDAKELNALAEQVVQFVLANESSTGGPRIAFANGIFVDASLSLKP 117 Query: 186 SFKDLVVGKYKAETQSVDFQTKAPE 260 SF++L V +YKA+TQSVDFQ K E Sbjct: 118 SFEELAVCQYKAKTQSVDFQHKTLE 142
>PDGFA_XENLA (P13698) Platelet-derived growth factor A chain precursor (PDGF| A-chain) (Platelet-derived growth factor alpha polypeptide) (PDGF-1) Length = 226 Score = 30.8 bits (68), Expect = 0.95 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -1 Query: 212 LAHYEILEGRLEFERGVDEDAVGEGDARAASARRVGEHDLHH 87 LAH EI + +R +D D+VG G+ +A+ R +HD HH Sbjct: 35 LAHSEI-RSISDLQRLLDIDSVGGGEDASAANIRSQKHDFHH 75
>SPB6_MOUSE (Q60854) Serpin B6 (Placental thrombin inhibitor) (Protease| inhibitor 6) (PI-6) Length = 378 Score = 30.8 bits (68), Expect = 0.95 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +3 Query: 144 ANGVFVDASLKLKPSFKDLVVGKYKAETQSVDFQTKAPE 260 AN +F D + L SFKD + Y+AE + +DFQ E Sbjct: 93 ANRLFGDKTCDLLASFKDSCLKFYEAELEELDFQGATEE 131
>CBG_SAISC (P50451) Corticosteroid-binding globulin precursor (CBG)| (Transcortin) (Serpin A6) Length = 406 Score = 30.4 bits (67), Expect = 1.2 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Frame = +3 Query: 3 GATRDQLAATLG--AAEKGDAEGLHXXXXXXXXXXXXXXSGAGGPRVAFANGVFVDASLK 176 G TR QL LG EK +AE +H S + N +F+D SL+ Sbjct: 83 GHTRAQLLHGLGFNLTEKSEAE-IHQSFQHLHQLLAESDSSL---EMTLGNALFLDGSLE 138 Query: 177 LKPSFKDLVVGKYKAETQSVDFQ 245 L SF + Y++E +++FQ Sbjct: 139 LLESFSADIKHYYESEVLTLNFQ 161
>SPA3A_MOUSE (Q6P4P1) Serine protease inhibitor A3A precursor (Serpin A3A)| Length = 422 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 147 NGVFVDASLKLKPSFKDLVVGKYKAETQSVDFQ 245 N +F+D L++ FK+ YKAE + DFQ Sbjct: 139 NALFIDKHLQILTEFKEKARALYKAEAFTTDFQ 171
>A1AT_PIG (P50447) Alpha-1-antitrypsin precursor (Alpha-1 protease inhibitor)| (Alpha-1-antiproteinase) Length = 421 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 147 NGVFVDASLKLKPSFKDLVVGKYKAETQSVDFQ 245 NG+F+D KL P F + V Y +E S++F+ Sbjct: 143 NGLFIDEKAKLVPKFLEDVKNLYHSEAFSINFR 175
>A1AT_CALCN (O54763) Alpha-1-antiproteinase precursor (Alpha-1-antitrypsin)| (Alpha-1-proteinase inhibitor) Length = 412 Score = 29.3 bits (64), Expect = 2.8 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +3 Query: 147 NGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 NG+F+D SLKL F + V Y +E S +F Sbjct: 135 NGLFIDQSLKLADKFLEDVKNLYHSEAFSTNF 166
>A1AT_RAT (P17475) Alpha-1-antiproteinase precursor (Alpha-1-antitrypsin)| (Alpha-1-proteinase inhibitor) Length = 411 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +3 Query: 147 NGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 NG+FV+ +LKL F + V Y +E SV+F Sbjct: 134 NGLFVNKNLKLVEKFLEEVKNNYHSEAFSVNF 165
>ALMS_SPETR (O54761) Alpha-1-antitrypsin-like protein GS55-MS precursor| Length = 413 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 147 NGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 NG+F+D +LKL F V Y +E S DF Sbjct: 135 NGLFIDHNLKLLDKFLQDVKNLYHSEAFSTDF 166
>A1AT5_MOUSE (Q00898) Alpha-1-antitrypsin 1-5 precursor (Serine protease| inhibitor 1-5) (Alpha-1 protease inhibitor 5) Length = 413 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 132 RVAFANGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 +++ NG+FV+ LKL F + Y+AE SV+F Sbjct: 129 QLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNF 165
>A1AT4_MOUSE (Q00897) Alpha-1-antitrypsin 1-4 precursor (Serine protease| inhibitor 1-4) (Alpha-1 protease inhibitor 4) Length = 413 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 132 RVAFANGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 +++ NG+FV+ LKL F + Y+AE SV+F Sbjct: 129 QLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNF 165
>A1AT3_MOUSE (Q00896) Alpha-1-antitrypsin 1-3 precursor (Serine protease| inhibitor 1-3) (Alpha-1 protease inhibitor 3) Length = 413 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 132 RVAFANGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 +++ NG+FV+ LKL F + Y+AE SV+F Sbjct: 129 QLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNF 165
>A1AT2_MOUSE (P22599) Alpha-1-antitrypsin 1-2 precursor (Serine protease| inhibitor 1-2) (Alpha-1 protease inhibitor 2) (Alpha-1-antiproteinase) (AAT) Length = 413 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 132 RVAFANGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 +++ NG+FV+ LKL F + Y+AE SV+F Sbjct: 129 QLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNF 165
>A1AT1_MOUSE (P07758) Alpha-1-antitrypsin 1-1 precursor (Serine protease| inhibitor 1-1) (Alpha-1 protease inhibitor 1) (Alpha-1-antiproteinase) (AAT) Length = 413 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 132 RVAFANGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 +++ NG+FV+ LKL F + Y+AE SV+F Sbjct: 129 QLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNF 165
>A1AT6_MOUSE (P81105) Alpha-1-antitrypsin 1-6 precursor (Serine protease| inhibitor 1-6) (Alpha-1 protease inhibitor 6) Length = 412 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 132 RVAFANGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 +++ NG+FV+ LKL F + Y+AE SV+F Sbjct: 129 QLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNF 165
>A1AS_CAVPO (P22325) Alpha-1-antiproteinase S precursor (Alpha-1-antitrypsin)| (Alpha-1-proteinase inhibitor) (APS) Length = 405 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 147 NGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 NG+F+D LKLK F + V Y AE +F Sbjct: 127 NGLFLDQKLKLKEKFSEDVKTLYHAEAFPTNF 158
>A1AF_CAVPO (P22324) Alpha-1-antiproteinase F precursor (Alpha-1-antitrypsin)| (Alpha-1-proteinase inhibitor) (APF) (Fragment) Length = 403 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 147 NGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 NG+F+D LKLK F + V Y AE +F Sbjct: 125 NGLFLDQKLKLKEKFSEDVKTLYHAEAFPTNF 156
>ALLT_SPETR (O54762) Alpha-1-antitrypsin-like protein GS55-LT precursor| Length = 413 Score = 28.1 bits (61), Expect = 6.2 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +3 Query: 147 NGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 NG+F+D ++KL F + + Y +E S DF Sbjct: 135 NGLFIDHNMKLLDKFLEDIKNLYHSEAFSTDF 166
>CBG_RAT (P31211) Corticosteroid-binding globulin precursor (CBG)| (Transcortin) (Serpin A6) Length = 396 Score = 27.7 bits (60), Expect = 8.1 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = +3 Query: 126 GPRVAFANGVFVDASLKLKPSFKDLVVGKYKAETQSVDFQ--TKAPE 260 G + N +F+ LKLK SF V Y++E ++DF+ TKA + Sbjct: 114 GLEMNMGNAMFLLQKLKLKDSFLADVKQYYESEALAIDFEDWTKASQ 160
>ALST_TAMSI (O54759) Alpha-1-antitrypsin-like protein CM55-ST precursor| Length = 413 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 147 NGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 NG+F+D +LKL F + V Y +E S +F Sbjct: 135 NGLFIDRNLKLLDKFLEDVKSLYHSEAFSTNF 166
>ALSI_TAMSI (O54760) Alpha-1-antitrypsin-like protein CM55-SI precursor| Length = 413 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 147 NGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 NG+F+D +LKL F + V Y +E S +F Sbjct: 135 NGLFIDRNLKLLDKFLEDVKSLYHSEAFSTNF 166
>MYF5_BOVIN (P17667) Myogenic factor 5 (Myf-5)| Length = 255 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -2 Query: 238 STDCVSALYLPTTRSLKEGLSLSEASTKTPLAKATRGPPAP 116 S DC+S++ T S + GL L + ++ +P+A P P Sbjct: 203 SLDCLSSIVDRITNSEQPGLPLQDPASLSPVASTDSQPATP 243
>COTR_CAVPO (P22323) Serine proteinase inhibitor A3K precursor (Contrapsin)| (CP) (Serpin A3K) Length = 410 Score = 27.7 bits (60), Expect = 8.1 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 147 NGVFVDASLKLKPSFKDLVVGKYKAETQSVDF 242 NG+F+D +LKLK F V Y AE +F Sbjct: 132 NGLFLDQNLKLKEKFSGDVKTLYHAEAFPTNF 163
>A1AT2_HORSE (P38029) Alpha-1-antiproteinase 2 precursor (Alpha-1-antitrypsin 2)| (Alpha-1-proteinase inhibitor 2) (SPI2) Length = 421 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 147 NGVFVDASLKLKPSFKDLVVGKYKAETQSVDFQ 245 NG+F+D S KL F + V Y +E S++F+ Sbjct: 143 NGLFIDESAKLLDKFLEDVKKLYHSEAFSINFR 175
>RTCA_HALSA (Q9HRE8) Probable RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)| (RNA-3'-phosphate cyclase) (RNA cyclase) Length = 339 Score = 27.7 bits (60), Expect = 8.1 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -1 Query: 173 ERGVDEDAVGEGDARAASARRVGEHDL-HHLLGERVEALGVA--FLRGPE 33 ERGV DAVGE A A +A G + HL + V + VA +R PE Sbjct: 257 ERGVSADAVGENAADALAAFESGPGAVDSHLADQLVPVVAVAGGEVRAPE 306 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,566,540 Number of Sequences: 219361 Number of extensions: 343800 Number of successful extensions: 1621 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1591 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1621 length of database: 80,573,946 effective HSP length: 62 effective length of database: 66,973,564 effective search space used: 1607365536 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
