ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast69a08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z15116.1|HVPAZXG H.vulgare pazx gene encoding protein zx Length = 3283 Score = 389 bits (196), Expect = e-105 Identities = 233/244 (95%), Gaps = 6/244 (2%) Strand = Plus / Plus Query: 9 acgcgtgaccagcttgctgccacgctcggggccgcggagaaaggcgacgccgagggcctc 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 769 acgcgtgaccagcttgctgccacgctcggggccgcggagaaaggcgacgccgagggcctc 828 Query: 69 cacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggcgctggcggc 128 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 829 cacgctctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggcgctggcggc 888 Query: 129 ccgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgctcaaactcaagccttcc 188 || || | |||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct: 889 cctcg---ctccttcgccaa---cgtcttcgtcgactcctcgctcaaactcaagccttcc 942 Query: 189 ttcaaggatctcgtagtgggcaagtacaaggccgagacgcagtccgtggacttccaaact 248 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 943 ttcaaggatctcgtagtgggcaagtacaagggcgagacgcagtccgtggacttccaaact 1002 Query: 249 aagg 252 |||| Sbjct: 1003 aagg 1006
>emb|Y11486.1|TASERPIN T.aestivum mRNA for serpin WZS3 Length = 1332 Score = 210 bits (106), Expect = 2e-51 Identities = 172/194 (88%) Strand = Plus / Plus Query: 60 gagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggc 119 ||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||| | Sbjct: 241 gagggactccacgcactcgccgagcaggtggtgcagttcgtcctcgccgacgcgtccaac 300 Query: 120 gctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgctcaaactc 179 |||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||| Sbjct: 301 atcggcggcccgcgcgtcgccttcgccaacggcgtcttcgtggacgcgtcgctgcagctc 360 Query: 180 aagccttccttcaaggatctcgtagtgggcaagtacaaggccgagacgcagtccgtggac 239 ||||| |||||| |||| |||| |||| ||||||||||||||||| | |||||||||||| Sbjct: 361 aagccatccttccaggagctcgcagtgtgcaagtacaaggccgaggcccagtccgtggac 420 Query: 240 ttccaaactaaggc 253 |||||||||||||| Sbjct: 421 ttccaaactaaggc 434
>gb|BT024177.1| Zea mays clone EL01N0320D07 mRNA sequence Length = 1591 Score = 190 bits (96), Expect = 1e-45 Identities = 165/188 (87%) Strand = Plus / Plus Query: 57 gccgagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcg 116 ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| || Sbjct: 279 gccgacggcctgcacgcgctcgccgagcaggtggtgcagctcgtgctcgccgacggctcc 338 Query: 117 ggcgctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgctcaaa 176 ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| || Sbjct: 339 ggcgccggcggcccgcgcgtcgccttcgccgacggcgtcttcgtcgactcctcgctgaag 398 Query: 177 ctcaagccttccttcaaggatctcgtagtgggcaagtacaaggccgagacgcagtccgtg 236 |||||||| ||||| |||| ||| ||||| ||||||| |||||| || |||||||| Sbjct: 399 ctcaagccggccttcgaggaggtcgccgtgggaaagtacagggccgacacccagtccgtc 458 Query: 237 gacttcca 244 |||||||| Sbjct: 459 gacttcca 466
>emb|Y11485.1|TAESERPIN T.aestivum mRNA for serpin WZS2 Length = 1380 Score = 178 bits (90), Expect = 6e-42 Identities = 162/186 (87%) Strand = Plus / Plus Query: 68 ccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggcgctggcgg 127 |||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||| || Sbjct: 285 ccacgcgctcgccgagcaagtggtccagttcgtgctcgccgacgcgtcctccgctggagg 344 Query: 128 cccgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgctcaaactcaagccttc 187 ||||| |||||||||||||||||||||||||| ||||| ||||| |||||||| || Sbjct: 345 tccgcgtgtcgccttcgccaacggcgtcttcgtggacgcgtcgctgctcctcaagccatc 404 Query: 188 cttcaaggatctcgtagtgggcaagtacaaggccgagacgcagtccgtggacttccaaac 247 |||| | || || | |||| ||||||||||||||||||| || ||||||||||||||||| Sbjct: 405 cttccaagagcttgcagtgtgcaagtacaaggccgagacccaatccgtggacttccaaac 464 Query: 248 taaggc 253 |||||| Sbjct: 465 taaggc 470
>emb|AJ245878.1|TAE245878 Triticum aestivum mRNA for serpin (WSZ1c gene) Length = 1350 Score = 167 bits (84), Expect = 2e-38 Identities = 162/188 (86%) Strand = Plus / Plus Query: 66 ctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggcgctggc 125 |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct: 238 ctccacgcgctcgccgagcaggtggtgcagttcgtgctcgccgacgcgtcctccgctgga 297 Query: 126 ggcccgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgctcaaactcaagcct 185 || |||| ||||||||||||||||| |||||||| ||||| ||||| |||||||| Sbjct: 298 ggtccgcatgtcgccttcgccaacggtgtcttcgtggacgcgtcgctgcccctcaagcca 357 Query: 186 tccttcaaggatctcgtagtgggcaagtacaaggccgagacgcagtccgtggacttccaa 245 |||||| | || || | |||| ||||||||||||| || || || ||||||||||||||| Sbjct: 358 tccttccaagagcttgcagtgtgcaagtacaaggctgacacccaatccgtggacttccaa 417 Query: 246 actaaggc 253 |||||||| Sbjct: 418 actaaggc 425
>ref|XM_463156.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1962 Score = 161 bits (81), Expect = 1e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 56 cgccgagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtc 115 ||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||| || Sbjct: 216 cgccgagggcctccacgcgttcgccgagcagctggtgcagctcgtcctcgccgacgcttc 275 Query: 116 gggcgctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgct 172 ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 276 cggcgccggcggcccgcgcgtcgccttcgccgacggcgtcttcgtcgacgcgtcgct 332 Score = 81.8 bits (41), Expect = 1e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 204 gtgggcaagtacaaggccgagacgcagtccgtggacttccaaactaaggctcctgaa 260 ||||||||||||||||||||||| || ||||| |||||||||||||||||| ||||| Sbjct: 364 gtgggcaagtacaaggccgagacccactccgtagacttccaaactaaggctgctgaa 420
>gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0034J04 map S1466, complete sequence Length = 140012 Score = 161 bits (81), Expect = 1e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 56 cgccgagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtc 115 ||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||| || Sbjct: 126221 cgccgagggcctccacgcgttcgccgagcagctggtgcagctcgtcctcgccgacgcttc 126280 Query: 116 gggcgctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgct 172 ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 126281 cggcgccggcggcccgcgcgtcgccttcgccgacggcgtcttcgtcgacgcgtcgct 126337 Score = 113 bits (57), Expect = 3e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 60 gagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggc 119 ||||| || |||||| |||||||||||||||||||| |||||||||||||| |||| | Sbjct: 132658 gaggggctgcacgcgttcgccgagcaggtggtgcagctcgtgctcgccgactcgtctccc 132717 Query: 120 gctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgac 164 || |||||||| ||||||||||||||| ||||||||||| ||||| Sbjct: 132718 gccggcggccctcgcgtcgccttcgccgacggcgtcttcatcgac 132762 Score = 73.8 bits (37), Expect = 2e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 204 gtgggcaagtacaaggccgagacgcagtccgtggacttccaaactaagg 252 ||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 126369 gtgggcaagtacaaggccgagacccactccgtagacttccaaactaagg 126417 Score = 58.0 bits (29), Expect = 1e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 204 gtgggcaagtacaaggccgagacgcagtccgtggacttccaaactaagg 252 ||||||||||||||||| ||||| || || || |||||||||||||||| Sbjct: 132802 gtgggcaagtacaaggctgagacccactcggtcgacttccaaactaagg 132850
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 161 bits (81), Expect = 1e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 56 cgccgagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtc 115 ||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||| || Sbjct: 22856290 cgccgagggcctccacgcgttcgccgagcagctggtgcagctcgtcctcgccgacgcttc 22856349 Query: 116 gggcgctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgct 172 ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 22856350 cggcgccggcggcccgcgcgtcgccttcgccgacggcgtcttcgtcgacgcgtcgct 22856406 Score = 113 bits (57), Expect = 3e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 60 gagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggc 119 ||||| || |||||| |||||||||||||||||||| |||||||||||||| |||| | Sbjct: 22862727 gaggggctgcacgcgttcgccgagcaggtggtgcagctcgtgctcgccgactcgtctccc 22862786 Query: 120 gctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgac 164 || |||||||| ||||||||||||||| ||||||||||| ||||| Sbjct: 22862787 gccggcggccctcgcgtcgccttcgccgacggcgtcttcatcgac 22862831 Score = 73.8 bits (37), Expect = 2e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 204 gtgggcaagtacaaggccgagacgcagtccgtggacttccaaactaagg 252 ||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 22856438 gtgggcaagtacaaggccgagacccactccgtagacttccaaactaagg 22856486 Score = 58.0 bits (29), Expect = 1e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 204 gtgggcaagtacaaggccgagacgcagtccgtggacttccaaactaagg 252 ||||||||||||||||| ||||| || || || |||||||||||||||| Sbjct: 22862871 gtgggcaagtacaaggctgagacccactcggtcgacttccaaactaagg 22862919
>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence Length = 184783 Score = 161 bits (81), Expect = 1e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 56 cgccgagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtc 115 ||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||| || Sbjct: 58820 cgccgagggcctccacgcgttcgccgagcagctggtgcagctcgtcctcgccgacgcttc 58879 Query: 116 gggcgctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgct 172 ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 58880 cggcgccggcggcccgcgcgtcgccttcgccgacggcgtcttcgtcgacgcgtcgct 58936 Score = 113 bits (57), Expect = 3e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 60 gagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggc 119 ||||| || |||||| |||||||||||||||||||| |||||||||||||| |||| | Sbjct: 65257 gaggggctgcacgcgttcgccgagcaggtggtgcagctcgtgctcgccgactcgtctccc 65316 Query: 120 gctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgac 164 || |||||||| ||||||||||||||| ||||||||||| ||||| Sbjct: 65317 gccggcggccctcgcgtcgccttcgccgacggcgtcttcatcgac 65361 Score = 73.8 bits (37), Expect = 2e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 204 gtgggcaagtacaaggccgagacgcagtccgtggacttccaaactaagg 252 ||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 58968 gtgggcaagtacaaggccgagacccactccgtagacttccaaactaagg 59016 Score = 58.0 bits (29), Expect = 1e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 204 gtgggcaagtacaaggccgagacgcagtccgtggacttccaaactaagg 252 ||||||||||||||||| ||||| || || || |||||||||||||||| Sbjct: 65401 gtgggcaagtacaaggctgagacccactcggtcgacttccaaactaagg 65449
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 161 bits (81), Expect = 1e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 56 cgccgagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtc 115 ||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||| || Sbjct: 22849318 cgccgagggcctccacgcgttcgccgagcagctggtgcagctcgtcctcgccgacgcttc 22849377 Query: 116 gggcgctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgct 172 ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 22849378 cggcgccggcggcccgcgcgtcgccttcgccgacggcgtcttcgtcgacgcgtcgct 22849434 Score = 113 bits (57), Expect = 3e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 60 gagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggc 119 ||||| || |||||| |||||||||||||||||||| |||||||||||||| |||| | Sbjct: 22855755 gaggggctgcacgcgttcgccgagcaggtggtgcagctcgtgctcgccgactcgtctccc 22855814 Query: 120 gctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgac 164 || |||||||| ||||||||||||||| ||||||||||| ||||| Sbjct: 22855815 gccggcggccctcgcgtcgccttcgccgacggcgtcttcatcgac 22855859 Score = 73.8 bits (37), Expect = 2e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 204 gtgggcaagtacaaggccgagacgcagtccgtggacttccaaactaagg 252 ||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct: 22849466 gtgggcaagtacaaggccgagacccactccgtagacttccaaactaagg 22849514 Score = 58.0 bits (29), Expect = 1e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 204 gtgggcaagtacaaggccgagacgcagtccgtggacttccaaactaagg 252 ||||||||||||||||| ||||| || || || |||||||||||||||| Sbjct: 22855899 gtgggcaagtacaaggctgagacccactcggtcgacttccaaactaagg 22855947
>emb|AJ245879.1|TAE245879 Triticum aestivum mRNA for serpin (WSZ2a gene) Length = 1364 Score = 137 bits (69), Expect = 2e-29 Identities = 171/205 (83%) Strand = Plus / Plus Query: 49 aaggcgacgccgagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccg 108 ||||||| || ||| | |||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 258 aaggcgaggctgagaggctccacgcgctcgccgagcaggtggtgcagttcgtgcttgccg 317 Query: 109 acgcgtcgggcgctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgacgcct 168 ||||||| || | | ||||| ||| ||||||| |||||||||||||| ||||| | Sbjct: 318 acgcgtcctatgccgatagtccgcgtgtcaccttcgctaacggcgtcttcgtggacgcat 377 Query: 169 cgctcaaactcaagccttccttcaaggatctcgtagtgggcaagtacaaggccgagacgc 228 |||| |||||||| |||||| |||| || | |||| |||| ||||||||||| | | Sbjct: 378 cgctgccgctcaagccatccttccaggagcttgcagtgtgcaaatacaaggccgaagctc 437 Query: 229 agtccgtggacttccaaactaaggc 253 ||||||||||||||||||||||||| Sbjct: 438 agtccgtggacttccaaactaaggc 462
>emb|Z49890.1|TAWZCISPN T.aestivum WZCI mRNA for serpin Length = 1373 Score = 135 bits (68), Expect = 8e-29 Identities = 166/196 (84%), Gaps = 2/196 (1%) Strand = Plus / Plus Query: 59 cgagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcggg 118 |||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||| Sbjct: 272 cgagggactccacgcgctcgccgagcaggtggtccagtttgtgctcgccgacgcgtcctc 331 Query: 119 cgctggcggc-ccgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgctcaaac 177 | |||| || ||||| ||||| |||||||| ||||||||||| ||||| ||||| | Sbjct: 332 cactggtgggtccgcgtgtcgc-ttcgccaatggcgtcttcgtggacgcgtcgctgctcc 390 Query: 178 tcaagccttccttcaaggatctcgtagtgggcaagtacaaggccgagacgcagtccgtgg 237 ||||||| |||||| | || | | |||| ||||||||||||||||||| || ||||||| Sbjct: 391 tcaagccatccttccaagagattgcagtgtgcaagtacaaggccgagacccaatccgtgg 450 Query: 238 acttccaaactaaggc 253 |||||||||||||||| Sbjct: 451 acttccaaactaaggc 466
>emb|X97636.1|HVSERP H.vulgare mRNA for serpin Length = 1311 Score = 117 bits (59), Expect = 2e-23 Identities = 146/175 (83%) Strand = Plus / Plus Query: 70 acgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggcgctggcggcc 129 |||||||||| |||||||||||||| | ||||||||| | | ||| || | || |||| Sbjct: 248 acgcgctcgcggagcaggtggtgcaatttgtgctcgccaatgagtccagcaccggtggcc 307 Query: 130 cgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgctcaaactcaagccttcct 189 ||||| ||||||||||||||||| |||| ||||| || |||||| ||||||||||||| Sbjct: 308 cgcgcatcgccttcgccaacggcatctttgtcgatgcgtcgctctcgctcaagccttcct 367 Query: 190 tcaaggatctcgtagtgggcaagtacaaggccgagacgcagtccgtggacttcca 244 || |||| |||| ||| || ||||||||||| |||| ||||||||||| ||||| Sbjct: 368 tcgaggagctcgctgtgtgccagtacaaggccaagacacagtccgtggatttcca 422
>emb|X95277.1|HVSER H.vulgare mRNA for serpin Length = 1320 Score = 117 bits (59), Expect = 2e-23 Identities = 152/183 (83%) Strand = Plus / Plus Query: 78 gccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggcgctggcggcccgcgcgtc 137 |||||||||||||||||| ||||||||||||||||||| | |||||||||| || Sbjct: 276 gccgagcaggtggtgcagttcgtgctcgccgacgcgtccatcaactccggcccgcgcatc 335 Query: 138 gccttcgccaacggcgtcttcgtcgacgcctcgctcaaactcaagccttccttcaaggat 197 |||||||||||||| || ||||||||||| |||||| |||||||| |||||| |||| Sbjct: 336 gccttcgccaacggtgttttcgtcgacgcgtcgctctcgctcaagccatccttccaggag 395 Query: 198 ctcgtagtgggcaagtacaaggccgagacgcagtccgtggacttccaaactaaggctcct 257 |||| ||| |||| ||||| | ||| ||||||||||||||| | |||||||||||| Sbjct: 396 ctcgccgtgtgcaactacaaatctgaggtccagtccgtggacttcaagactaaggctcct 455 Query: 258 gaa 260 ||| Sbjct: 456 gaa 458
>ref|XM_463157.1| Oryza sativa (japonica cultivar-group), mRNA Length = 498 Score = 113 bits (57), Expect = 3e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 60 gagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggc 119 ||||| || |||||| |||||||||||||||||||| |||||||||||||| |||| | Sbjct: 253 gaggggctgcacgcgttcgccgagcaggtggtgcagctcgtgctcgccgactcgtctccc 312 Query: 120 gctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgac 164 || |||||||| ||||||||||||||| ||||||||||| ||||| Sbjct: 313 gccggcggccctcgcgtcgccttcgccgacggcgtcttcatcgac 357 Score = 58.0 bits (29), Expect = 1e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 204 gtgggcaagtacaaggccgagacgcagtccgtggacttccaaactaagg 252 ||||||||||||||||| ||||| || || || |||||||||||||||| Sbjct: 397 gtgggcaagtacaaggctgagacccactcggtcgacttccaaactaagg 445
>dbj|AK107194.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-A07, full insert sequence Length = 1428 Score = 113 bits (57), Expect = 3e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 60 gagggcctccacgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggc 119 ||||| || |||||| |||||||||||||||||||| |||||||||||||| |||| | Sbjct: 292 gaggggctgcacgcgttcgccgagcaggtggtgcagctcgtgctcgccgactcgtctccc 351 Query: 120 gctggcggcccgcgcgtcgccttcgccaacggcgtcttcgtcgac 164 || |||||||| ||||||||||||||| ||||||||||| ||||| Sbjct: 352 gccggcggccctcgcgtcgccttcgccgacggcgtcttcatcgac 396 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 204 gtgggcaagtacaaggccgagacgcagtccgtggacttccaaactaaggc 253 ||||||||||||||||| ||||| || || || ||||||||||||||||| Sbjct: 436 gtgggcaagtacaaggctgagacccactcggtcgacttccaaactaaggc 485
>emb|X51726.1|HVPAZ1 Barley Paz1 gene for protein Z Length = 3133 Score = 93.7 bits (47), Expect = 3e-16 Identities = 143/175 (81%) Strand = Plus / Plus Query: 70 acgcgctcgccgagcaggtggtgcaggtcgtgctcgccgacgcgtcgggcgctggcggcc 129 |||||||||| |||||||||||||| | ||||||||| | | ||| || | || |||| Sbjct: 1314 acgcgctcgcggagcaggtggtgcaatttgtgctcgccaatgagtccagcaccggtggcc 1373 Query: 130 cgcgcgtcgccttcgccaacggcgtcttcgtcgacgcctcgctcaaactcaagccttcct 189 ||||| ||||||||||||||||| |||| ||||| || ||| ||||||||||||| Sbjct: 1374 cgcgcatcgccttcgccaacggcatctttgtcgatgcgagtctctcgctcaagccttcct 1433 Query: 190 tcaaggatctcgtagtgggcaagtacaaggccgagacgcagtccgtggacttcca 244 || |||| |||| ||| || ||||||||||| |||| ||||||||||| ||||| Sbjct: 1434 tcgaggagctcgctgtgtgccagtacaaggccaagacacagtccgtggatttcca 1488
>gb|AY106751.1| Zea mays PCO139651 mRNA sequence Length = 1105 Score = 75.8 bits (38), Expect = 6e-11 Identities = 93/110 (84%), Gaps = 1/110 (0%) Strand = Plus / Plus Query: 135 gtcgccttcgccaacggcgtcttcgtcgacgcctcgctcaaactcaagccttccttcaag 194 |||||||||||| |||| |||||||||||| ||||||| || |||||||| ||||| || Sbjct: 8 gtcgccttcgccgacgg-gtcttcgtcgactcctcgctgaagctcaagccggccttcgag 66 Query: 195 gatctcgtagtgggcaagtacaaggccgagacgcagtccgtggacttcca 244 || ||| ||||| ||||||| |||||| || |||||||| |||||||| Sbjct: 67 gagatcgccgtgggaaagtacagggccgacacccagtccgtcgacttcca 116
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 67 tccacgcgctcgccgagcaggt 88 |||||||||||||||||||||| Sbjct: 2426694 tccacgcgctcgccgagcaggt 2426673 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 gcgctcgccgagcaggtggt 91 |||||||||||||||||||| Sbjct: 3061175 gcgctcgccgagcaggtggt 3061194
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 67 tccacgcgctcgccgagcaggt 88 |||||||||||||||||||||| Sbjct: 3641840 tccacgcgctcgccgagcaggt 3641819 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 gcgctcgccgagcaggtggt 91 |||||||||||||||||||| Sbjct: 171199 gcgctcgccgagcaggtggt 171180
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 91 tgcaggtcgtgctcgccgacgc 112 |||||||||||||||||||||| Sbjct: 1901493 tgcaggtcgtgctcgccgacgc 1901514
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 67 tccacgcgctcgccgagcaggt 88 |||||||||||||||||||||| Sbjct: 3384548 tccacgcgctcgccgagcaggt 3384527 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 gcgctcgccgagcaggtggt 91 |||||||||||||||||||| Sbjct: 4023063 gcgctcgccgagcaggtggt 4023044
>ref|NM_191372.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1236 Score = 42.1 bits (21), Expect = 0.85 Identities = 30/33 (90%) Strand = Plus / Plus Query: 141 ttcgccaacggcgtcttcgtcgacgcctcgctc 173 |||||||||||||||| ||||||||| ||||| Sbjct: 301 ttcgccaacggcgtctgggtcgacgccgcgctc 333
>ref|XM_801148.1| Trypanosoma cruzi strain CL Brener imidazolonepropionase (Tc00.1047053509137.30) partial mRNA Length = 1293 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 cgccgagcaggtggtgcaggt 97 ||||||||||||||||||||| Sbjct: 30 cgccgagcaggtggtgcaggt 50
>ref|XM_815954.1| Trypanosoma cruzi strain CL Brener imidazolonepropionase (Tc00.1047053508741.140) partial mRNA Length = 1293 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 cgccgagcaggtggtgcaggt 97 ||||||||||||||||||||| Sbjct: 30 cgccgagcaggtggtgcaggt 50
>emb|AL356417.17| Human DNA sequence from clone RP11-13P5 on chromosome 6 Contains two novel genes, the 5' end of a novel gene (FNDC2) and a CpG island, complete sequence Length = 106427 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 tcaagccttccttcaaggatc 198 ||||||||||||||||||||| Sbjct: 90857 tcaagccttccttcaaggatc 90837
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 tggcggcccgcgcgtcgcctt 142 ||||||||||||||||||||| Sbjct: 435597 tggcggcccgcgcgtcgcctt 435577
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.85 Identities = 30/33 (90%) Strand = Plus / Minus Query: 141 ttcgccaacggcgtcttcgtcgacgcctcgctc 173 |||||||||||||||| ||||||||| ||||| Sbjct: 32244559 ttcgccaacggcgtctgggtcgacgccgcgctc 32244527
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 42.1 bits (21), Expect = 0.85 Identities = 30/33 (90%) Strand = Plus / Minus Query: 141 ttcgccaacggcgtcttcgtcgacgcctcgctc 173 |||||||||||||||| ||||||||| ||||| Sbjct: 115312 ttcgccaacggcgtctgggtcgacgccgcgctc 115280
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 65 cctccacgcgctcgccgagcaggtg 89 ||||| ||||||||||||||||||| Sbjct: 4423207 cctccgcgcgctcgccgagcaggtg 4423183
>dbj|AK106246.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-D07, full insert sequence Length = 1499 Score = 42.1 bits (21), Expect = 0.85 Identities = 30/33 (90%) Strand = Plus / Plus Query: 141 ttcgccaacggcgtcttcgtcgacgcctcgctc 173 |||||||||||||||| ||||||||| ||||| Sbjct: 302 ttcgccaacggcgtctgggtcgacgccgcgctc 334
>ref|XM_366952.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG03028.4) partial mRNA Length = 843 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ccacgcgctcgccgagcagg 87 |||||||||||||||||||| Sbjct: 343 ccacgcgctcgccgagcagg 324
>gb|AC146542.2| Gasterosteus aculeatus clone CH213-58L3, complete sequence Length = 231097 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tcgccttcgccaacggcgtc 155 |||||||||||||||||||| Sbjct: 56716 tcgccttcgccaacggcgtc 56735
>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12 Length = 306650 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tcgccgagcaggtggtgcag 95 |||||||||||||||||||| Sbjct: 190883 tcgccgagcaggtggtgcag 190864
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 gcgctcgccgagcaggtggt 91 |||||||||||||||||||| Sbjct: 319732 gcgctcgccgagcaggtggt 319751
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cgccgagcaggtggtgcagg 96 |||||||||||||||||||| Sbjct: 58356 cgccgagcaggtggtgcagg 58337
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cgccgagcaggtggtgcagg 96 |||||||||||||||||||| Sbjct: 323278 cgccgagcaggtggtgcagg 323259
>gb|AF312879.1|AF312879 Sinorhizobium meliloti methyl-accepting chemotaxis protein McpX (mcpX) gene, complete cds Length = 2367 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tcgccgagcaggtggtgcag 95 |||||||||||||||||||| Sbjct: 1952 tcgccgagcaggtggtgcag 1971
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 ggcgacgccgagggcctccacgcg 74 ||||||||||||||||| |||||| Sbjct: 8254654 ggcgacgccgagggcctgcacgcg 8254677
>ref|XM_310592.2| Anopheles gambiae str. PEST ENSANGP00000025057 (ENSANGG00000016857), partial mRNA Length = 1146 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 cgagcaggtggtgcaggtcgtgct 103 ||||||||||||||||| |||||| Sbjct: 939 cgagcaggtggtgcagggcgtgct 962
>ref|XM_310591.2| Anopheles gambiae str. PEST ENSANGP00000019346 (ENSANGG00000016857), partial mRNA Length = 1287 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 cgagcaggtggtgcaggtcgtgct 103 ||||||||||||||||| |||||| Sbjct: 1080 cgagcaggtggtgcagggcgtgct 1103
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 caggtcgtgctcgccgacgc 112 |||||||||||||||||||| Sbjct: 1595802 caggtcgtgctcgccgacgc 1595821 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,599,308 Number of Sequences: 3902068 Number of extensions: 1599308 Number of successful extensions: 37025 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35440 Number of HSP's gapped (non-prelim): 1577 length of query: 260 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 238 effective length of database: 17,147,199,772 effective search space: 4081033545736 effective search space used: 4081033545736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
