ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast69a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 pre... 40 0.004
2FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 p... 37 0.025
3FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 pre... 37 0.025
4FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 pre... 34 0.21
5KCNAE_DROME (Q02280) Potassium voltage-gated channel protein eag... 29 6.8

>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +2

Query: 38  STSNSAVNVSTGIVHTTVGTALRATRPLAVYSVDKVLLPMDLFG-PKPPASAP 193
           STS   V + TG+  + +   +    P+ +++VD VLLP +LFG  K P+ AP
Sbjct: 290 STSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELFGKSKSPSPAP 342



to top

>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 38  STSNSAVNVSTGIVHTTVGTALRATRPLAVYSVDKVLLPMDLFG-PKPPASAP 193
           STS   V + TG+  + +   +    P+ +++VD VLLP +LFG    PA AP
Sbjct: 291 STSGDEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELFGKSSSPAPAP 343



to top

>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor|
          Length = 254

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = +2

Query: 47  NSAVNVSTGIVHTTVGTALRATRPLAVYSVDKVLLPMDLFG---PKPPASAP 193
           +  V + +    T V +++ +T P+AVY V++VLLP  +FG   P  PA AP
Sbjct: 153 SGTVRIDSLWTRTKVSSSVFSTDPVAVYQVNRVLLPEAIFGTDVPPMPAPAP 204



to top

>FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 precursor|
          Length = 424

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +2

Query: 56  VNVSTGIVHTTVGTALRATRPLAVYSVDKVLLPMDLF---GPKPPASAP 193
           V + T I    +   L   +PLA+Y+ DKVLLP +LF     + PA AP
Sbjct: 293 VTLKTRINTVKIVDTLIDEQPLAIYATDKVLLPKELFKASAVEAPAPAP 341



to top

>KCNAE_DROME (Q02280) Potassium voltage-gated channel protein eag (Ether-a-go-go|
            protein)
          Length = 1174

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
 Frame = -1

Query: 198  ASGADAGGLGPKRSMGSSTLSTE*TA------SGLVARSAVPTVVCTMPVETLTAL 49
            A GA +GG  P  S G +T   E  A       G     A PT   T PV+T+  +
Sbjct: 930  APGAGSGGNAPDNSSGQTTPGDEICAGCGAGGGGTPTTQAPPTSAVTSPVDTVITI 985


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,209,234
Number of Sequences: 219361
Number of extensions: 411551
Number of successful extensions: 1203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top