ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast69a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY029259.1| Hordeum vulgare alpha-L-arabinofuranosidase/beta-... 729 0.0
2ref|XM_474061.1| Oryza sativa (japonica cultivar-group), predic... 464 e-127
3dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 464 e-127
4dbj|AK071973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 464 e-127
5emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4,... 307 1e-80
6emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4,... 307 1e-80
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 307 1e-80
8dbj|AB234292.1| Raphanus sativus RsAraf1 mRNA for alpha-L-arabin... 46 0.079
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.079
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.079
11dbj|AB125492.1| Sternotherus odoratus DNA, CryIIE SINE and its f... 42 1.2
12ref|XM_317438.2| Anopheles gambiae str. PEST ENSANGP00000023635 ... 42 1.2
13gb|U42214.1|AGU42214 Anopheles gambiae engrailed gene, complete cds 42 1.2
14gb|U42429.1|AGU42429 Anopheles gambiae engrailed mRNA, complete cds 42 1.2
15gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 4.9
16gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
17gb|AE009264.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 4.9
18gb|AE008348.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 4.9
19gb|AY553855.1| Escherichia coli strain A2363 plasmid pTJ100 iron... 40 4.9
20emb|AJ851089.1| Uncultured bacterium pRSB107 plasmid 40 4.9
21gb|DQ381420.1| Escherichia coli plasmid pAPEC-O1-ColBM, complete... 40 4.9
22gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.9
23gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 4.9
24ref|XM_310553.2| Anopheles gambiae str. PEST ENSANGP00000017316 ... 40 4.9
25emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 4.9
26dbj|AB074877.1| Agrobacterium tumefaciens gene cluster (PalR, Pa... 40 4.9
27gb|AY545598.5| Escherichia coli plasmid pAPEC-O2-ColV, complete ... 40 4.9 
>gb|AY029259.1| Hordeum vulgare alpha-L-arabinofuranosidase/beta-D-xylosidase
            isoenzyme ARA-I mRNA, complete cds
          Length = 2647

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    tttgacggcgacccccggcagctcgccttcggcagcctcggccccaaggacgtgtgcacg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 tttgacggcgacccccggcagctcgccttcggcagcctcggccccaaggacgtgtgcacg 1228

                                                                        
Query: 61   tcttccaaccgggagctggcacgcgagacggcgcgccagggcatcgtgctcctcaagaac 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 tcttccaaccgggagctggcacgcgagacggcgcgccagggcatcgtgctcctcaagaac 1288

                                                                        
Query: 121  agcggcgcgctgccgctctcggcaaagtccatcaagtccatggccgtcattgggcccaac 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 agcggcgcgctgccgctctcggcaaagtccatcaagtccatggccgtcattgggcccaac 1348

                                                                        
Query: 181  gccaatgccagcttcaccatgatcggcaactacgaaggcacaccgtgcaagtacacgacg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 gccaatgccagcttcaccatgatcggcaactacgaaggcacaccgtgcaagtacacgacg 1408

                                                                        
Query: 241  ccgctccagggcctgggcgccaaggtcaacaccgtgtaccagccggggtgcaccaacgtc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 ccgctccagggcctgggcgccaaggtcaacaccgtgtaccagccggggtgcaccaacgtc 1468

                                                                        
Query: 301  gggtgcagcgggaacagcctacagctcagtaccgccgtggcggccgcagccagtgccgac 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 gggtgcagcgggaacagcctacagctcagtaccgccgtggcggccgcagccagtgccgac 1528

                    
Query: 361  gtgaccgt 368
            ||||||||
Sbjct: 1529 gtgaccgt 1536
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>ref|XM_474061.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2298

 Score =  464 bits (234), Expect = e-127
 Identities = 303/326 (92%)
 Strand = Plus / Plus

                                                                        
Query: 4    gacggcgacccccggcagctcgccttcggcagcctcggccccaaggacgtgtgcacgtct 63
            |||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 1096 gacggcgacccgaggaagctccccttcggcagcctcggccccaaggacgtgtgcacgtcg 1155

                                                                        
Query: 64   tccaaccgggagctggcacgcgagacggcgcgccagggcatcgtgctcctcaagaacagc 123
            || |||| ||||||||| |||||| | ||||||||||||||||| ||||||||||||| |
Sbjct: 1156 tcgaaccaggagctggcccgcgaggccgcgcgccagggcatcgtcctcctcaagaacacc 1215

                                                                        
Query: 124  ggcgcgctgccgctctcggcaaagtccatcaagtccatggccgtcattgggcccaacgcc 183
            ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 1216 ggcgcgctgccgctctccgccaagtccatcaagtccatggccgtcattggccccaacgcc 1275

                                                                        
Query: 184  aatgccagcttcaccatgatcggcaactacgaaggcacaccgtgcaagtacacgacgccg 243
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1276 aatgccagcttcaccatgatcggcaactacgaaggtacgccgtgcaagtacacgacgccg 1335

                                                                        
Query: 244  ctccagggcctgggcgccaaggtcaacaccgtgtaccagccggggtgcaccaacgtcggg 303
            ||||||||||| |||||||| |||  |||||||||||||||||| |||||||||||||||
Sbjct: 1336 ctccagggcctcggcgccaacgtcgccaccgtgtaccagccgggatgcaccaacgtcggg 1395

                                      
Query: 304  tgcagcgggaacagcctacagctcag 329
            ||||||||||||||||| ||||||||
Sbjct: 1396 tgcagcgggaacagcctccagctcag 1421
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>dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065A06, full
            insert sequence
          Length = 2821

 Score =  464 bits (234), Expect = e-127
 Identities = 303/326 (92%)
 Strand = Plus / Plus

                                                                        
Query: 4    gacggcgacccccggcagctcgccttcggcagcctcggccccaaggacgtgtgcacgtct 63
            |||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 1265 gacggcgacccgaggaagctccccttcggcagcctcggccccaaggacgtgtgcacgtcg 1324

                                                                        
Query: 64   tccaaccgggagctggcacgcgagacggcgcgccagggcatcgtgctcctcaagaacagc 123
            || |||| ||||||||| |||||| | ||||||||||||||||| ||||||||||||| |
Sbjct: 1325 tcgaaccaggagctggcccgcgaggccgcgcgccagggcatcgtcctcctcaagaacacc 1384

                                                                        
Query: 124  ggcgcgctgccgctctcggcaaagtccatcaagtccatggccgtcattgggcccaacgcc 183
            ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 1385 ggcgcgctgccgctctccgccaagtccatcaagtccatggccgtcattggccccaacgcc 1444

                                                                        
Query: 184  aatgccagcttcaccatgatcggcaactacgaaggcacaccgtgcaagtacacgacgccg 243
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1445 aatgccagcttcaccatgatcggcaactacgaaggtacgccgtgcaagtacacgacgccg 1504

                                                                        
Query: 244  ctccagggcctgggcgccaaggtcaacaccgtgtaccagccggggtgcaccaacgtcggg 303
            ||||||||||| |||||||| |||  |||||||||||||||||| |||||||||||||||
Sbjct: 1505 ctccagggcctcggcgccaacgtcgccaccgtgtaccagccgggatgcaccaacgtcggg 1564

                                      
Query: 304  tgcagcgggaacagcctacagctcag 329
            ||||||||||||||||| ||||||||
Sbjct: 1565 tgcagcgggaacagcctccagctcag 1590
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>dbj|AK071973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J07, full
           insert sequence
          Length = 1746

 Score =  464 bits (234), Expect = e-127
 Identities = 303/326 (92%)
 Strand = Plus / Plus

                                                                       
Query: 4   gacggcgacccccggcagctcgccttcggcagcctcggccccaaggacgtgtgcacgtct 63
           |||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 226 gacggcgacccgaggaagctccccttcggcagcctcggccccaaggacgtgtgcacgtcg 285

                                                                       
Query: 64  tccaaccgggagctggcacgcgagacggcgcgccagggcatcgtgctcctcaagaacagc 123
           || |||| ||||||||| |||||| | ||||||||||||||||| ||||||||||||| |
Sbjct: 286 tcgaaccaggagctggcccgcgaggccgcgcgccagggcatcgtcctcctcaagaacacc 345

                                                                       
Query: 124 ggcgcgctgccgctctcggcaaagtccatcaagtccatggccgtcattgggcccaacgcc 183
           ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 346 ggcgcgctgccgctctccgccaagtccatcaagtccatggccgtcattggccccaacgcc 405

                                                                       
Query: 184 aatgccagcttcaccatgatcggcaactacgaaggcacaccgtgcaagtacacgacgccg 243
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 406 aatgccagcttcaccatgatcggcaactacgaaggtacgccgtgcaagtacacgacgccg 465

                                                                       
Query: 244 ctccagggcctgggcgccaaggtcaacaccgtgtaccagccggggtgcaccaacgtcggg 303
           ||||||||||| |||||||| |||  |||||||||||||||||| |||||||||||||||
Sbjct: 466 ctccagggcctcggcgccaacgtcgccaccgtgtaccagccgggatgcaccaacgtcggg 525

                                     
Query: 304 tgcagcgggaacagcctacagctcag 329
           ||||||||||||||||| ||||||||
Sbjct: 526 tgcagcgggaacagcctccagctcag 551
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>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01,
              complete sequence
          Length = 153643

 Score =  307 bits (155), Expect = 1e-80
 Identities = 200/215 (93%)
 Strand = Plus / Minus

                                                                          
Query: 4      gacggcgacccccggcagctcgccttcggcagcctcggccccaaggacgtgtgcacgtct 63
              |||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 143495 gacggcgacccgaggaagctccccttcggcagcctcggccccaaggacgtgtgcacgtcg 143436

                                                                          
Query: 64     tccaaccgggagctggcacgcgagacggcgcgccagggcatcgtgctcctcaagaacagc 123
              || |||| ||||||||| |||||| | ||||||||||||||||| ||||||||||||| |
Sbjct: 143435 tcgaaccaggagctggcccgcgaggccgcgcgccagggcatcgtcctcctcaagaacacc 143376

                                                                          
Query: 124    ggcgcgctgccgctctcggcaaagtccatcaagtccatggccgtcattgggcccaacgcc 183
              ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 143375 ggcgcgctgccgctctccgccaagtccatcaagtccatggccgtcattggccccaacgcc 143316

                                                 
Query: 184    aatgccagcttcaccatgatcggcaactacgaagg 218
              |||||||||||||||||||||||||||||||||||
Sbjct: 143315 aatgccagcttcaccatgatcggcaactacgaagg 143281



 Score =  165 bits (83), Expect = 1e-37
 Identities = 101/107 (94%)
 Strand = Plus / Minus

                                                                          
Query: 223    ccgtgcaagtacacgacgccgctccagggcctgggcgccaaggtcaacaccgtgtaccag 282
              |||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||
Sbjct: 143180 ccgtgcaagtacacgacgccgctccagggcctcggcgccaacgtcgccaccgtgtaccag 143121

                                                             
Query: 283    ccggggtgcaccaacgtcgggtgcagcgggaacagcctacagctcag 329
              ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 143120 ccgggatgcaccaacgtcgggtgcagcgggaacagcctccagctcag 143074
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>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
             complete sequence
          Length = 126659

 Score =  307 bits (155), Expect = 1e-80
 Identities = 200/215 (93%)
 Strand = Plus / Minus

                                                                         
Query: 4     gacggcgacccccggcagctcgccttcggcagcctcggccccaaggacgtgtgcacgtct 63
             |||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 19782 gacggcgacccgaggaagctccccttcggcagcctcggccccaaggacgtgtgcacgtcg 19723

                                                                         
Query: 64    tccaaccgggagctggcacgcgagacggcgcgccagggcatcgtgctcctcaagaacagc 123
             || |||| ||||||||| |||||| | ||||||||||||||||| ||||||||||||| |
Sbjct: 19722 tcgaaccaggagctggcccgcgaggccgcgcgccagggcatcgtcctcctcaagaacacc 19663

                                                                         
Query: 124   ggcgcgctgccgctctcggcaaagtccatcaagtccatggccgtcattgggcccaacgcc 183
             ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 19662 ggcgcgctgccgctctccgccaagtccatcaagtccatggccgtcattggccccaacgcc 19603

                                                
Query: 184   aatgccagcttcaccatgatcggcaactacgaagg 218
             |||||||||||||||||||||||||||||||||||
Sbjct: 19602 aatgccagcttcaccatgatcggcaactacgaagg 19568



 Score =  165 bits (83), Expect = 1e-37
 Identities = 101/107 (94%)
 Strand = Plus / Minus

                                                                         
Query: 223   ccgtgcaagtacacgacgccgctccagggcctgggcgccaaggtcaacaccgtgtaccag 282
             |||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||
Sbjct: 19467 ccgtgcaagtacacgacgccgctccagggcctcggcgccaacgtcgccaccgtgtaccag 19408

                                                            
Query: 283   ccggggtgcaccaacgtcgggtgcagcgggaacagcctacagctcag 329
             ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 19407 ccgggatgcaccaacgtcgggtgcagcgggaacagcctccagctcag 19361
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  307 bits (155), Expect = 1e-80
 Identities = 200/215 (93%)
 Strand = Plus / Minus

                                                                            
Query: 4        gacggcgacccccggcagctcgccttcggcagcctcggccccaaggacgtgtgcacgtct 63
                |||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 32624761 gacggcgacccgaggaagctccccttcggcagcctcggccccaaggacgtgtgcacgtcg 32624702

                                                                            
Query: 64       tccaaccgggagctggcacgcgagacggcgcgccagggcatcgtgctcctcaagaacagc 123
                || |||| ||||||||| |||||| | ||||||||||||||||| ||||||||||||| |
Sbjct: 32624701 tcgaaccaggagctggcccgcgaggccgcgcgccagggcatcgtcctcctcaagaacacc 32624642

                                                                            
Query: 124      ggcgcgctgccgctctcggcaaagtccatcaagtccatggccgtcattgggcccaacgcc 183
                ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 32624641 ggcgcgctgccgctctccgccaagtccatcaagtccatggccgtcattggccccaacgcc 32624582

                                                   
Query: 184      aatgccagcttcaccatgatcggcaactacgaagg 218
                |||||||||||||||||||||||||||||||||||
Sbjct: 32624581 aatgccagcttcaccatgatcggcaactacgaagg 32624547



 Score =  165 bits (83), Expect = 1e-37
 Identities = 101/107 (94%)
 Strand = Plus / Minus

                                                                            
Query: 223      ccgtgcaagtacacgacgccgctccagggcctgggcgccaaggtcaacaccgtgtaccag 282
                |||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||
Sbjct: 32624446 ccgtgcaagtacacgacgccgctccagggcctcggcgccaacgtcgccaccgtgtaccag 32624387

                                                               
Query: 283      ccggggtgcaccaacgtcgggtgcagcgggaacagcctacagctcag 329
                ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 32624386 ccgggatgcaccaacgtcgggtgcagcgggaacagcctccagctcag 32624340
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>dbj|AB234292.1| Raphanus sativus RsAraf1 mRNA for alpha-L-arabinofuranosidase,
            complete cds
          Length = 2444

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 211  tacgaaggcacaccgtgcaagtacacgacgccgct 245
            ||||||||||||||||| |||||||| || |||||
Sbjct: 1363 tacgaaggcacaccgtgtaagtacacaacaccgct 1397
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 94       cgccagggcatcgtgctcctcaagaac 120
                |||||||||||||| ||||||||||||
Sbjct: 27861311 cgccagggcatcgtcctcctcaagaac 27861337



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 89       cggcgcgccagggcatcgtgctcctcaagaac 120
                ||||||| ||||| ||||| ||||||||||||
Sbjct: 26342611 cggcgcggcaggggatcgtcctcctcaagaac 26342580
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 94       cgccagggcatcgtgctcctcaagaac 120
                |||||||||||||| ||||||||||||
Sbjct: 27885299 cgccagggcatcgtcctcctcaagaac 27885325



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 89       cggcgcgccagggcatcgtgctcctcaagaac 120
                ||||||| ||||| ||||| ||||||||||||
Sbjct: 26656339 cggcgcggcaggggatcgtcctcctcaagaac 26656308
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>dbj|AB125492.1| Sternotherus odoratus DNA, CryIIE SINE and its flanking sequence of
           KSo05
          Length = 1114

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 143 caaagtccatcaagtccatgg 163
           |||||||||||||||||||||
Sbjct: 819 caaagtccatcaagtccatgg 839
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>ref|XM_317438.2| Anopheles gambiae str. PEST ENSANGP00000023635 (ENSANGG00000020659),
            partial mRNA
          Length = 1713

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 334  gccgtggcggccgcagccagtgccg 358
            |||||||| ||||||||||||||||
Sbjct: 1002 gccgtggccgccgcagccagtgccg 978
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>gb|U42214.1|AGU42214 Anopheles gambiae engrailed gene, complete cds
          Length = 7727

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 334  gccgtggcggccgcagccagtgccg 358
            |||||||| ||||||||||||||||
Sbjct: 1883 gccgtggctgccgcagccagtgccg 1859
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>gb|U42429.1|AGU42429 Anopheles gambiae engrailed mRNA, complete cds
          Length = 2205

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 334  gccgtggcggccgcagccagtgccg 358
            |||||||| ||||||||||||||||
Sbjct: 1077 gccgtggctgccgcagccagtgccg 1053
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    gaacagcggcgcgctgccgc 136
              ||||||||||||||||||||
Sbjct: 142920 gaacagcggcgcgctgccgc 142901
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>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0004D06, complete sequence
          Length = 157547

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 89    cggcgcgccagggcatcgtgctcctcaagaac 120
             ||||||| ||||| ||||| ||||||||||||
Sbjct: 43913 cggcgcggcaggggatcgtcctcctcaagaac 43882
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>gb|AE009264.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 34 of
            187 of the complete sequence
          Length = 13282

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 179  acgccaatgccagcttcaccatga 202
            ||||||||| ||||||||||||||
Sbjct: 5904 acgccaatgacagcttcaccatga 5927
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>gb|AE008348.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 152 of
            187 of the complete sequence
          Length = 10775

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 179  acgccaatgccagcttcaccatga 202
            ||||||||| ||||||||||||||
Sbjct: 2328 acgccaatgacagcttcaccatga 2305
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>gb|AY553855.1| Escherichia coli strain A2363 plasmid pTJ100 iron acquisition
           operon, complete sequence
          Length = 8097

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 300 cgggtgcagcgggaacagcc 319
           ||||||||||||||||||||
Sbjct: 678 cgggtgcagcgggaacagcc 659
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>emb|AJ851089.1| Uncultured bacterium pRSB107 plasmid
          Length = 120592

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    cgggtgcagcgggaacagcc 319
              ||||||||||||||||||||
Sbjct: 104131 cgggtgcagcgggaacagcc 104150
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>gb|DQ381420.1| Escherichia coli plasmid pAPEC-O1-ColBM, complete sequence
          Length = 174241

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    cgggtgcagcgggaacagcc 319
              ||||||||||||||||||||
Sbjct: 148739 cgggtgcagcgggaacagcc 148758
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 8       gcgacccccggcagctcgcc 27
               ||||||||||||||||||||
Sbjct: 4541924 gcgacccccggcagctcgcc 4541943



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 12      cccccggcagctcgccttcg 31
               ||||||||||||||||||||
Sbjct: 3390923 cccccggcagctcgccttcg 3390942
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    cgctccagggcctgggcgcc 261
              ||||||||||||||||||||
Sbjct: 459720 cgctccagggcctgggcgcc 459701
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>ref|XM_310553.2| Anopheles gambiae str. PEST ENSANGP00000017316 (ENSANGG00000014827),
            partial mRNA
          Length = 2904

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 6    cggcgacccccggcagctcg 25
            ||||||||||||||||||||
Sbjct: 1997 cggcgacccccggcagctcg 2016
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     cggcagctcgccttcggcag 35
              ||||||||||||||||||||
Sbjct: 871794 cggcagctcgccttcggcag 871813
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>dbj|AB074877.1| Agrobacterium tumefaciens gene cluster (PalR, PalE, PalF, PalG, PalK,
            PalA, PalB) for palatinose transport, complete cds
          Length = 8204

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 179  acgccaatgccagcttcaccatga 202
            ||||||||| ||||||||||||||
Sbjct: 7143 acgccaatgacagcttcaccatga 7166
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>gb|AY545598.5| Escherichia coli plasmid pAPEC-O2-ColV, complete sequence
          Length = 184501

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cgggtgcagcgggaacagcc 319
             ||||||||||||||||||||
Sbjct: 98823 cgggtgcagcgggaacagcc 98804


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,882,615
Number of Sequences: 3902068
Number of extensions: 1882615
Number of successful extensions: 36946
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36566
Number of HSP's gapped (non-prelim): 380
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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