| Clone Name | bast69a02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121743.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086B04, full insert sequence Length = 1174 Score = 131 bits (66), Expect = 2e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 308 atcccaagacatgctgcggccacgtctggtgctctttggcgactccatcactgagcagtc 367 ||||||||| ||| ||||||| || ||||||| || |||||||||||||| |||||||| Sbjct: 151 atcccaagagatggtgcggccgcgcatggtgctgttcggcgactccatcacggagcagtc 210 Query: 368 cttccgccccggcggttggggagcggcccttgccgacacctactcccgcaaggc 421 ||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| Sbjct: 211 cttccgccccggcggctggggcgccgccctcgccgacacctactcccgcaaggc 264
>dbj|AK070445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052C15, full insert sequence Length = 1237 Score = 131 bits (66), Expect = 2e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 308 atcccaagacatgctgcggccacgtctggtgctctttggcgactccatcactgagcagtc 367 ||||||||| ||| ||||||| || ||||||| || |||||||||||||| |||||||| Sbjct: 218 atcccaagagatggtgcggccgcgcatggtgctgttcggcgactccatcacggagcagtc 277 Query: 368 cttccgccccggcggttggggagcggcccttgccgacacctactcccgcaaggc 421 ||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| Sbjct: 278 cttccgccccggcggctggggcgccgccctcgccgacacctactcccgcaaggc 331
>dbj|AK060164.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B04, full insert sequence Length = 1015 Score = 131 bits (66), Expect = 2e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 308 atcccaagacatgctgcggccacgtctggtgctctttggcgactccatcactgagcagtc 367 ||||||||| ||| ||||||| || ||||||| || |||||||||||||| |||||||| Sbjct: 106 atcccaagagatggtgcggccgcgcatggtgctgttcggcgactccatcacggagcagtc 165 Query: 368 cttccgccccggcggttggggagcggcccttgccgacacctactcccgcaaggc 421 ||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| Sbjct: 166 cttccgccccggcggctggggcgccgccctcgccgacacctactcccgcaaggc 219
>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete sequence Length = 163279 Score = 129 bits (65), Expect = 8e-27 Identities = 101/113 (89%) Strand = Plus / Minus Query: 308 atcccaagacatgctgcggccacgtctggtgctctttggcgactccatcactgagcagtc 367 ||||||||| ||| ||||||| || ||||||| || |||||||||||||| |||||||| Sbjct: 120082 atcccaagagatggtgcggccgcgcatggtgctgttcggcgactccatcacggagcagtc 120023 Query: 368 cttccgccccggcggttggggagcggcccttgccgacacctactcccgcaagg 420 ||||||||||||||| ||||| || ||||| |||||||||||||||||||||| Sbjct: 120022 cttccgccccggcggctggggcgccgccctcgccgacacctactcccgcaagg 119970
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 129 bits (65), Expect = 8e-27 Identities = 101/113 (89%) Strand = Plus / Plus Query: 308 atcccaagacatgctgcggccacgtctggtgctctttggcgactccatcactgagcagtc 367 ||||||||| ||| ||||||| || ||||||| || |||||||||||||| |||||||| Sbjct: 17252197 atcccaagagatggtgcggccgcgcatggtgctgttcggcgactccatcacggagcagtc 17252256 Query: 368 cttccgccccggcggttggggagcggcccttgccgacacctactcccgcaagg 420 ||||||||||||||| ||||| || ||||| |||||||||||||||||||||| Sbjct: 17252257 cttccgccccggcggctggggcgccgccctcgccgacacctactcccgcaagg 17252309
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 129 bits (65), Expect = 8e-27 Identities = 101/113 (89%) Strand = Plus / Plus Query: 308 atcccaagacatgctgcggccacgtctggtgctctttggcgactccatcactgagcagtc 367 ||||||||| ||| ||||||| || ||||||| || |||||||||||||| |||||||| Sbjct: 17261237 atcccaagagatggtgcggccgcgcatggtgctgttcggcgactccatcacggagcagtc 17261296 Query: 368 cttccgccccggcggttggggagcggcccttgccgacacctactcccgcaagg 420 ||||||||||||||| ||||| || ||||| |||||||||||||||||||||| Sbjct: 17261297 cttccgccccggcggctggggcgccgccctcgccgacacctactcccgcaagg 17261349
>ref|NM_197003.1| Oryza sativa (japonica cultivar-group) putative esterase (OSJNBa0026O12.11), mRNA Length = 720 Score = 119 bits (60), Expect = 8e-24 Identities = 81/88 (92%) Strand = Plus / Plus Query: 334 tggtgctctttggcgactccatcactgagcagtccttccgccccggcggttggggagcgg 393 ||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| || | Sbjct: 17 tggtgctgttcggcgactccatcacggagcagtccttccgccccggcggctggggcgccg 76 Query: 394 cccttgccgacacctactcccgcaaggc 421 |||| ||||||||||||||||||||||| Sbjct: 77 ccctcgccgacacctactcccgcaaggc 104
>gb|AY105174.1| Zea mays PCO126977 mRNA sequence Length = 1224 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 336 gtgctctttggcgactccatcactgagcagtccttccgccccggcggttggggagcggcc 395 |||||||| || ||||||||||| |||||||||||||||||||| || ||||| || || Sbjct: 352 gtgctcttcggggactccatcaccgagcagtccttccgccccggtggctggggtgccgca 411 Query: 396 cttgccgacacctactcccgcaaggc 421 || || || |||||||| |||||||| Sbjct: 412 ctggctgatacctactcgcgcaaggc 437
>gb|AY104364.1| Zea mays PCO105529 mRNA sequence Length = 1358 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 322 tgcggccacgtctggtgctctttggcgactccatcactgagcagtccttc 371 ||||||| || ||||||||||| ||||||||||| || |||| ||||||| Sbjct: 369 tgcggccgcggctggtgctcttcggcgactccataaccgagctgtccttc 418
>ref|NM_188432.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 717 Score = 50.1 bits (25), Expect = 0.006 Identities = 73/89 (82%) Strand = Plus / Plus Query: 333 ctggtgctctttggcgactccatcactgagcagtccttccgccccggcggttggggagcg 392 ||||||||||| |||||||||||||| |||| |||||| | |||||| ||||| || Sbjct: 13 ctggtgctcttcggcgactccatcaccgagctctccttcgccgacggcggctggggcgcc 72 Query: 393 gcccttgccgacacctactcccgcaaggc 421 ||||| |||||| || | |||||||||| Sbjct: 73 gccctcgccgaccacttcgcccgcaaggc 101
>dbj|AK061229.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A03, full insert sequence Length = 1016 Score = 50.1 bits (25), Expect = 0.006 Identities = 73/89 (82%) Strand = Plus / Plus Query: 333 ctggtgctctttggcgactccatcactgagcagtccttccgccccggcggttggggagcg 392 ||||||||||| |||||||||||||| |||| |||||| | |||||| ||||| || Sbjct: 118 ctggtgctcttcggcgactccatcaccgagctctccttcgccgacggcggctggggcgcc 177 Query: 393 gcccttgccgacacctactcccgcaaggc 421 ||||| |||||| || | |||||||||| Sbjct: 178 gccctcgccgaccacttcgcccgcaaggc 206
>ref|NM_193318.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 483 Score = 48.1 bits (24), Expect = 0.023 Identities = 60/72 (83%) Strand = Plus / Plus Query: 333 ctggtgctctttggcgactccatcactgagcagtccttccgccccggcggttggggagcg 392 ||||||||||| |||||| ||||||| |||| |||||| | ||||||| ||||| || Sbjct: 254 ctggtgctcttcggcgacaccatcaccgagctctccttcgccgccggcggctggggcgcc 313 Query: 393 gcccttgccgac 404 ||||| |||||| Sbjct: 314 gccctcgccgac 325
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.023 Identities = 60/72 (83%) Strand = Plus / Plus Query: 333 ctggtgctctttggcgactccatcactgagcagtccttccgccccggcggttggggagcg 392 ||||||||||| |||||| ||||||| |||| |||||| | ||||||| ||||| || Sbjct: 20097236 ctggtgctcttcggcgacaccatcaccgagctctccttcgccgccggcggctggggcgcc 20097295 Query: 393 gcccttgccgac 404 ||||| |||||| Sbjct: 20097296 gccctcgccgac 20097307 Score = 48.1 bits (24), Expect = 0.023 Identities = 60/72 (83%) Strand = Plus / Minus Query: 333 ctggtgctctttggcgactccatcactgagcagtccttccgccccggcggttggggagcg 392 ||||||||||| |||||||||||||| |||| |||||| | |||||| ||||| || Sbjct: 6243762 ctggtgctcttcggcgactccatcaccgagctctccttcgccgacggcggctggggcgcc 6243703 Query: 393 gcccttgccgac 404 ||||| |||||| Sbjct: 6243702 gccctcgccgac 6243691
>dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0051H17 Length = 187471 Score = 48.1 bits (24), Expect = 0.023 Identities = 60/72 (83%) Strand = Plus / Plus Query: 333 ctggtgctctttggcgactccatcactgagcagtccttccgccccggcggttggggagcg 392 ||||||||||| |||||| ||||||| |||| |||||| | ||||||| ||||| || Sbjct: 3614 ctggtgctcttcggcgacaccatcaccgagctctccttcgccgccggcggctggggcgcc 3673 Query: 393 gcccttgccgac 404 ||||| |||||| Sbjct: 3674 gccctcgccgac 3685
>dbj|AP004233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17 Length = 139014 Score = 48.1 bits (24), Expect = 0.023 Identities = 60/72 (83%) Strand = Plus / Plus Query: 333 ctggtgctctttggcgactccatcactgagcagtccttccgccccggcggttggggagcg 392 ||||||||||| |||||| ||||||| |||| |||||| | ||||||| ||||| || Sbjct: 95198 ctggtgctcttcggcgacaccatcaccgagctctccttcgccgccggcggctggggcgcc 95257 Query: 393 gcccttgccgac 404 ||||| |||||| Sbjct: 95258 gccctcgccgac 95269
>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17 Length = 180186 Score = 48.1 bits (24), Expect = 0.023 Identities = 60/72 (83%) Strand = Plus / Minus Query: 333 ctggtgctctttggcgactccatcactgagcagtccttccgccccggcggttggggagcg 392 ||||||||||| |||||||||||||| |||| |||||| | |||||| ||||| || Sbjct: 105960 ctggtgctcttcggcgactccatcaccgagctctccttcgccgacggcggctggggcgcc 105901 Query: 393 gcccttgccgac 404 ||||| |||||| Sbjct: 105900 gccctcgccgac 105889
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 48.1 bits (24), Expect = 0.023 Identities = 60/72 (83%) Strand = Plus / Minus Query: 333 ctggtgctctttggcgactccatcactgagcagtccttccgccccggcggttggggagcg 392 ||||||||||| |||||||||||||| |||| |||||| | |||||| ||||| || Sbjct: 14828 ctggtgctcttcggcgactccatcaccgagctctccttcgccgacggcggctggggcgcc 14769 Query: 393 gcccttgccgac 404 ||||| |||||| Sbjct: 14768 gccctcgccgac 14757
>ref|NM_125687.2| Arabidopsis thaliana carboxylic ester hydrolase/ hydrolase, acting on ester bonds AT5G62930 mRNA, complete cds Length = 1013 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Plus Query: 376 ccggcggttggggagcggcccttgccgacacctactcccgcaaggc 421 |||||||||||||| | || ||||||||| | ||||| |||||||| Sbjct: 80 ccggcggttggggatctgctcttgccgacgcttactctcgcaaggc 125
>gb|AY124825.1| Arabidopsis thaliana AT5g62930/MQB2_230 mRNA, complete cds Length = 729 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Plus Query: 376 ccggcggttggggagcggcccttgccgacacctactcccgcaaggc 421 |||||||||||||| | || ||||||||| | ||||| |||||||| Sbjct: 56 ccggcggttggggatctgctcttgccgacgcttactctcgcaaggc 101
>gb|AF462837.1|AF462837 Arabidopsis thaliana AT5g62930/MQB2_230 mRNA, complete cds Length = 1013 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Plus Query: 376 ccggcggttggggagcggcccttgccgacacctactcccgcaaggc 421 |||||||||||||| | || ||||||||| | ||||| |||||||| Sbjct: 80 ccggcggttggggatctgctcttgccgacgcttactctcgcaaggc 125
>emb|BX831608.1|CNS09ZRN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH18ZF08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 956 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Plus Query: 376 ccggcggttggggagcggcccttgccgacacctactcccgcaaggc 421 |||||||||||||| | || ||||||||| | ||||| |||||||| Sbjct: 61 ccggcggttggggatctgctcttgccgacgcttactctcgcaaggc 106
>emb|BX833303.1|CNS09ZAW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL43ZE12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 966 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Plus Query: 376 ccggcggttggggagcggcccttgccgacacctactcccgcaaggc 421 |||||||||||||| | || ||||||||| | ||||| |||||||| Sbjct: 61 ccggcggttggggatctgctcttgccgacgcttactctcgcaaggc 106
>emb|BX832574.1|CNS09ZN7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH81ZD06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 875 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Plus Query: 376 ccggcggttggggagcggcccttgccgacacctactcccgcaaggc 421 |||||||||||||| | || ||||||||| | ||||| |||||||| Sbjct: 69 ccggcggttggggatctgctcttgccgacgcttactctcgcaaggc 114
>emb|BX833549.1|CNS09Z73 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL61ZH09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 884 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Plus Query: 376 ccggcggttggggagcggcccttgccgacacctactcccgcaaggc 421 |||||||||||||| | || ||||||||| | ||||| |||||||| Sbjct: 27 ccggcggttggggatctgctcttgccgacgcttactctcgcaaggc 72
>dbj|AB009053.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2 Length = 78145 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Plus Query: 376 ccggcggttggggagcggcccttgccgacacctactcccgcaaggc 421 |||||||||||||| | || ||||||||| | ||||| |||||||| Sbjct: 69603 ccggcggttggggatctgctcttgccgacgcttactctcgcaaggc 69648
>dbj|AB008491.1| Arabidopsis thaliana ARR6 gene for response regulator 6, complete cds Length = 3600 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Minus Query: 376 ccggcggttggggagcggcccttgccgacacctactcccgcaaggc 421 |||||||||||||| | || ||||||||| | ||||| |||||||| Sbjct: 976 ccggcggttggggatctgctcttgccgacgcttactctcgcaaggc 931
>ref|XM_419943.1| PREDICTED: Gallus gallus similar to hypothetical protein 4833421E05Rik (LOC421930), mRNA Length = 1086 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 334 tggtgctctttggcgactccatcactgag 362 |||||||||| || ||||||||||||||| Sbjct: 251 tggtgctcttcggggactccatcactgag 279
>emb|BX931783.1| Gallus gallus finished cDNA, clone ChEST799l18 Length = 905 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 334 tggtgctctttggcgactccatcactgag 362 |||||||||| || ||||||||||||||| Sbjct: 69 tggtgctcttcggggactccatcactgag 97
>emb|BX930468.1| Gallus gallus finished cDNA, clone ChEST634c19 Length = 889 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 334 tggtgctctttggcgactccatcactgag 362 |||||||||| || ||||||||||||||| Sbjct: 55 tggtgctcttcggggactccatcactgag 83
>emb|AL590989.15| Human DNA sequence from clone RP11-149P14 on chromosome 1 Contains a pseudogene similar to part of cytochrome b, the 5' end of a novel gene and a CpG island, complete sequence Length = 110121 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gctccctctccgcccccctg 79 |||||||||||||||||||| Sbjct: 26827 gctccctctccgcccccctg 26846
>gb|AF327371.1| Sinorhizobium meliloti plasmid pRm1132f, complete sequence Length = 7212 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 cgcggcggcgctccctctccgccc 74 |||||||||||||| ||||||||| Sbjct: 5650 cgcggcggcgctccttctccgccc 5627
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 tccccggagtgctccgccac 114 |||||||||||||||||||| Sbjct: 1266264 tccccggagtgctccgccac 1266283 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,005,018 Number of Sequences: 3902068 Number of extensions: 3005018 Number of successful extensions: 46983 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46860 Number of HSP's gapped (non-prelim): 123 length of query: 421 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 399 effective length of database: 17,147,199,772 effective search space: 6841732709028 effective search space used: 6841732709028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)