>CCD94_MOUSE (Q9D6J3) Coiled-coil domain-containing protein 94|
          Length = 314

 Score =  149 bits (377), Expect = 2e-36
 Identities = 67/96 (69%), Positives = 78/96 (81%)
 Frame = +2

Query: 128 MGERKVLNKYYPPDFDPAKIPRRKQPKNQQIKVRMMLPMSIRCGTCGTYIYKGTKFNSRK 307
           M ERKVLNKYYPPDFDP+KIP+ K PK++Q  VR+M P ++RC TCG YIYKG KFN+RK
Sbjct: 1   MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60

Query: 308 EDCIGETYLGIQIFRFYFKCTRCSAEITFKTDPQNS 415
           E    E YLG+ IFRFY KCTRC AEITFKTDP+N+
Sbjct: 61  ETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENT 96

>CCD94_HUMAN (Q9BW85) Coiled-coil domain-containing protein 94|
          Length = 323

 Score =  149 bits (377), Expect = 2e-36
 Identities = 67/96 (69%), Positives = 78/96 (81%)
 Frame = +2

Query: 128 MGERKVLNKYYPPDFDPAKIPRRKQPKNQQIKVRMMLPMSIRCGTCGTYIYKGTKFNSRK 307
           M ERKVLNKYYPPDFDP+KIP+ K PK++Q  VR+M P ++RC TCG YIYKG KFN+RK
Sbjct: 1   MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60

Query: 308 EDCIGETYLGIQIFRFYFKCTRCSAEITFKTDPQNS 415
           E    E YLG+ IFRFY KCTRC AEITFKTDP+N+
Sbjct: 61  ETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENT 96

>CWF16_SCHPO (Q9P7C5) Cell cycle control protein cwf16|
          Length = 270

 Score =  120 bits (302), Expect = 1e-27
 Identities = 59/101 (58%), Positives = 73/101 (72%), Gaps = 5/101 (4%)
 Frame = +2

Query: 128 MGERKVLNKYYPPDFDPAKIPRRKQPKNQ-----QIKVRMMLPMSIRCGTCGTYIYKGTK 292
           M ERKVLNKY PPD+DP+  P +K+ K Q     ++ VR+M P S+RC TCG YIYKG K
Sbjct: 1   MSERKVLNKYIPPDYDPSIRPPKKKKKFQGPNGGKLTVRLMTPFSMRCHTCGEYIYKGKK 60

Query: 293 FNSRKEDCIGETYLGIQIFRFYFKCTRCSAEITFKTDPQNS 415
           FN+RKE   GE Y  I I RFY +CTRC+AEITF TDP+++
Sbjct: 61  FNARKEK-TGEKYFSIDILRFYIRCTRCAAEITFITDPKHA 100

>YKJ5_YEAST (P28320) 32.3 kDa protein in CWP1-MBR1 intergenic region|
          Length = 278

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 9/105 (8%)
 Frame = +2

Query: 128 MGERKVLNKYYPPDFDPAKIPRRKQPKNQQIK--------VRMMLPMSIRCGTCGTYIYK 283
           M ERK +NKYYPPD++P +  +  +   +++K        +R+M P S+RC  C  YI K
Sbjct: 1   MSERKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPK 60

Query: 284 GTKFNSRKEDCIGETYL-GIQIFRFYFKCTRCSAEITFKTDPQNS 415
             KFN +KE  + E YL  I+I+R    C RC+  I F+TDP NS
Sbjct: 61  SRKFNGKKE-LLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNS 104

>YS19_CAEEL (Q09651) Hypothetical protein ZK1307.9|
          Length = 369

 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
 Frame = +2

Query: 128 MGERKVLNKYYPPDFD-------------PAKIPRRKQPKNQQIKVRMMLPMSIRCGTCG 268
           MGERK  N YYPPDF+              A   R K+     + +R  +P +I C  C 
Sbjct: 1   MGERKGQNFYYPPDFNYKTHKSLNGYHGTHALRERAKKIDQGILVIRFEMPFNIWCLGCH 60

Query: 269 TYIYKGTKFNSRKEDCIGETYLGIQIFRFYFKCTRCSAEITFKTDPQN 412
            ++  G ++N+ K+  IG  Y    +  F  KC  C      +TDP+N
Sbjct: 61  NHVGMGVRYNAEKKK-IG-MYYTTPLHEFRMKCHLCDNYYVIRTDPKN 106

>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase D) (CANP D) (Small optic lobes protein)
          Length = 1594

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 235 ASHEHPVWHLRHLHL---QGHQIQLAQGGLHRRDILGHT 342
           A H HP  H  +LH    + HQ QL    LH+R + G +
Sbjct: 193 ADHSHPHHHHHYLHQELEEQHQHQLHSQHLHKRHLKGRS 231

>MTAP_MOUSE (Q9CQ65) S-methyl-5-thioadenosine phosphorylase (EC 2.4.2.28)|
           (5'-methylthioadenosine phosphorylase) (MTA
           phosphorylase) (MTAPase)
          Length = 283

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 203 PKNQQIKVRMMLPMSIRCGTCGTYI-YKGTKFNSRKEDCIGETY 331
           PK +++ +     + +RC + GT +  +G +F+SR E  I  T+
Sbjct: 146 PKTREVLIETAKKLGLRCHSKGTIVTIEGPRFSSRAESLIFRTW 189

>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2164

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 41   RRP*NDRDAPPSSPARP---T*CSG*LSGGGAMGERKVLNKYYPPDFDPAKIPRRKQPKN 211
            RRP ++ D  P    RP   T  +    G G  GERK  +++ PP  D  +   R++ +N
Sbjct: 883  RRPGDEPDDRPERRPRPRDATRPARAADGEGDDGERKRRHRHGPPAHDDRERRHRRRKEN 942

Query: 212  Q 214
            Q
Sbjct: 943  Q 943

>PEX6_HUMAN (Q13608) Peroxisome assembly factor 2 (PAF-2) (Peroxisomal-type|
           ATPase 1) (Peroxin-6) (Peroxisomal biogenesis factor 6)
          Length = 980

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
 Frame = -1

Query: 93  VGRAGEEGGASRS-------FQGRRVWVAKARE 16
           +G  G+  G SRS       FQG  VWVA+ARE
Sbjct: 198 LGGTGDSLGVSRSCLRGLGLFQGEWVWVAQARE 230

>MURG_SYMTH (Q67Q48) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 374

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 232 DASHEHPVWHLRHLHLQGHQIQLAQGGLHRRDI 330
           + +H H  W+ R L  +G  I L +GGL   D+
Sbjct: 288 NVTHNHQEWNARTLERRGAAIVLREGGLTPADL 320

>RCOR1_MOUSE (Q8CFE3) REST corepressor 1 (Protein CoREST)|
          Length = 477

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 116 GGGAMGERKVLNKYYP--PDFDPAKIPRRKQPKN 211
           GGG M   +V  +Y    PDFDPAK+ RR Q ++
Sbjct: 92  GGGGM---RVGPQYQAAVPDFDPAKLARRSQERD 122

>RCOR1_HUMAN (Q9UKL0) REST corepressor 1 (Protein CoREST)|
          Length = 482

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 116 GGGAMGERKVLNKYYP--PDFDPAKIPRRKQPKN 211
           GGG M   +V  +Y    PDFDPAK+ RR Q ++
Sbjct: 98  GGGGM---RVGPQYQAVVPDFDPAKLARRSQERD 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,470,647
Number of Sequences: 219361
Number of extensions: 759547
Number of successful extensions: 1960
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1952
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)