ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 345 7e-92
2dbj|AK066951.1| Oryza sativa (japonica cultivar-group) cDNA clon... 345 7e-92
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 280 3e-72
4dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic D... 280 3e-72
5ref|NM_101573.2| Arabidopsis thaliana unknown protein AT1G17130 ... 117 3e-23
6gb|BT012261.1| Arabidopsis thaliana At1g17130 gene, complete cds 117 3e-23
7gb|BT011615.1| Arabidopsis thaliana At1g17130 mRNA, complete cds 117 3e-23
8gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 geno... 100 7e-18
9ref|XM_423475.1| PREDICTED: Gallus gallus similar to hypothetica... 52 0.001
10ref|XM_849652.1| PREDICTED: Canis familiaris similar to CG8435-P... 46 0.091
11ref|XM_776932.1| PREDICTED: Strongylocentrotus purpuratus simila... 46 0.091
12ref|XM_523380.1| PREDICTED: Pan troglodytes LOC467988 (LOC467988... 44 0.36
13ref|NM_002428.2| Homo sapiens matrix metallopeptidase 15 (membra... 44 0.36
14gb|BC055428.1| Homo sapiens matrix metallopeptidase 15 (membrane... 44 0.36
15gb|BC036495.1| Homo sapiens matrix metallopeptidase 15 (membrane... 44 0.36
16gb|BC006412.1| Homo sapiens matrix metallopeptidase 15 (membrane... 44 0.36
17emb|AL356119.31| Human DNA sequence from clone RP5-856H7 on chro... 44 0.36
18emb|Z48482.1|HSMMPM2 H.sapiens mRNA for membrane-type matrix met... 44 0.36
19ref|NM_206855.1| Homo sapiens quaking homolog, KH domain RNA bin... 44 0.36
20ref|NM_206854.1| Homo sapiens quaking homolog, KH domain RNA bin... 44 0.36
21ref|NM_006775.1| Homo sapiens quaking homolog, KH domain RNA bin... 44 0.36
22ref|NM_206853.1| Homo sapiens quaking homolog, KH domain RNA bin... 44 0.36
23gb|BT007979.1| Synthetic construct Homo sapiens matrix metallopr... 44 0.36
24gb|BT006715.1| Homo sapiens matrix metalloproteinase 15 (membran... 44 0.36
25gb|AC012182.7| Homo sapiens chromosome 16 clone RP11-332G1, comp... 44 0.36
26gb|AY118949.1| Drosophila melanogaster LD32459 full insert cDNA 44 0.36
27emb|CR626096.1| full-length cDNA clone CS0DI023YA16 of Placenta ... 44 0.36
28emb|CR596713.1| full-length cDNA clone CS0DI028YF13 of Placenta ... 44 0.36
29ref|NM_137248.2| Drosophila melanogaster CG8435-RA (CG8435), mRNA 44 0.36
30gb|AC104612.1| Drosophila melanogaster, chromosome 2R, region 52... 44 0.36
31gb|AC007572.5|AC007572 Drosophila melanogaster, chromosome 2R, r... 44 0.36
32dbj|AB067808.2| Homo sapiens gene for RNA binding protein HQK, c... 44 0.36
33gb|AF272349.1| Homo sapiens quaking protein 3 (QK3) mRNA, partia... 44 0.36
34gb|AE003808.4| Drosophila melanogaster chromosome 2R, section 42... 44 0.36
35gb|AC004320.1|AC004320 Drosophila melanogaster (P1 DS07424 (D214... 44 0.36
36dbj|D85510.1| Homo sapiens mRNA for SMCP-2, partial cds 44 0.36
37dbj|D86331.1| Human MT2-MMP gene for matrix metalloprotein, comp... 44 0.36
38dbj|AB067801.1| Homo sapiens mRNA for RNA binding protein HQK-7B... 44 0.36
39dbj|AB067800.1| Homo sapiens mRNA for RNA binding protein HQK-7,... 44 0.36
40dbj|AB067799.1| Homo sapiens mRNA for RNA binding protein HQK-6,... 44 0.36
41dbj|AB067798.1| Homo sapiens mRNA for RNA binding protein HQK-5,... 44 0.36
42gb|AC079926.7| Homo sapiens BAC clone RP11-620E11 from 4, comple... 42 1.4
43dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
44dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
45emb|BX001038.6| Zebrafish DNA sequence from clone CH211-12M10 in... 42 1.4
46ref|NM_208323.1| Eremothecium gossypii ABR024Cp (ABR024C), mRNA 42 1.4
47gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.4
48ref|NM_008609.3| Mus musculus matrix metallopeptidase 15 (Mmp15)... 40 5.6
49gb|BC057952.1| Mus musculus matrix metallopeptidase 15, mRNA (cD... 40 5.6
50gb|BC047278.1| Mus musculus matrix metallopeptidase 15, mRNA (cD... 40 5.6
51gb|AC147546.1| Rattus norvegicus chromosome 1 clone RP32-323A19 ... 40 5.6
52emb|AL713999.28| Human DNA sequence from clone RP11-263K19 on ch... 40 5.6
53emb|AL591378.2| Human DNA sequence from clone RP11-64P15 on chro... 40 5.6
54gb|AY316591.1| Homo sapiens pyruvate kinase, liver and RBC (PKLR... 40 5.6
55emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; s... 40 5.6
56emb|CR450696.6| Zebrafish DNA sequence from clone CH211-147K9 in... 40 5.6
57gb|AC074276.18| Homo sapiens 3 BAC RP11-113A11 (Roswell Park Can... 40 5.6
58ref|XM_238034.3| PREDICTED: Rattus norvegicus matrix metalloprot... 40 5.6
59emb|BX004818.16| Zebrafish DNA sequence from clone DKEY-64O12, c... 40 5.6
60gb|U47654.1|HSU47654 Homo sapiens pyruvate kinase PK-R isoenzyme... 40 5.6
61gb|AC165414.9| Mus musculus chromosome 8, clone RP23-424A21, com... 40 5.6
62ref|NM_181871.2| Homo sapiens pyruvate kinase, liver and RBC (PK... 40 5.6
63ref|NM_000298.4| Homo sapiens pyruvate kinase, liver and RBC (PK... 40 5.6
64dbj|D86332.1| Mus musculus mRNA for membrane type-2 matrix metal... 40 5.6 
>dbj|AK071911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059D18, full
           insert sequence
          Length = 1443

 Score =  345 bits (174), Expect = 7e-92
 Identities = 264/294 (89%)
 Strand = Plus / Plus

                                                                       
Query: 121 cggcgcgatgggtgagcggaaggtgctgaacaagtactatccgccggacttcgacccggc 180
           ||||| |||||||||||| |||||||||||||||||||| || ||||||||||||||| |
Sbjct: 215 cggcgagatgggtgagcgcaaggtgctgaacaagtactaccctccggacttcgacccgtc 274

                                                                       
Query: 181 gaagatcccgcgtcggaagcagcctaagaaccagcagatcaaggtgcgcatgatgcttcc 240
           |||||||||||| |||  |||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 275 gaagatcccgcggcggcggcagcccaagaaccagcagatcaaggtgcgcatgatgctccc 334

                                                                       
Query: 241 catgagcatccggtgtggcacctgcggcacctacatctacaagggcaccaaattcaactc 300
           |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 335 catgagcatccgctgcggcacctgcggcacctacatctacaagggcaccaagttcaactc 394

                                                                       
Query: 301 gcgcaaggaggactgcatcggcgagacatacttgggcatacaaatatttagattttactt 360
           |||||||||||||  |   ||||||| |||| |||| |||||||||||||| ||||||||
Sbjct: 395 gcgcaaggaggacgtcgaaggcgagaaatacctggggatacaaatatttaggttttactt 454

                                                                 
Query: 361 caagtgtactaggtgctcagctgagattaccttcaaaacagaccctcaaaattc 414
           ||||||||| |  || ||||||||||| || |||||||| |||||||| |||||
Sbjct: 455 caagtgtacgaaatgttcagctgagataactttcaaaacggaccctcagaattc 508
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>dbj|AK066951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090C12, full
           insert sequence
          Length = 1612

 Score =  345 bits (174), Expect = 7e-92
 Identities = 264/294 (89%)
 Strand = Plus / Plus

                                                                       
Query: 121 cggcgcgatgggtgagcggaaggtgctgaacaagtactatccgccggacttcgacccggc 180
           ||||| |||||||||||| |||||||||||||||||||| || ||||||||||||||| |
Sbjct: 224 cggcgagatgggtgagcgcaaggtgctgaacaagtactaccctccggacttcgacccgtc 283

                                                                       
Query: 181 gaagatcccgcgtcggaagcagcctaagaaccagcagatcaaggtgcgcatgatgcttcc 240
           |||||||||||| |||  |||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 284 gaagatcccgcggcggcggcagcccaagaaccagcagatcaaggtgcgcatgatgctccc 343

                                                                       
Query: 241 catgagcatccggtgtggcacctgcggcacctacatctacaagggcaccaaattcaactc 300
           |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 344 catgagcatccgctgcggcacctgcggcacctacatctacaagggcaccaagttcaactc 403

                                                                       
Query: 301 gcgcaaggaggactgcatcggcgagacatacttgggcatacaaatatttagattttactt 360
           |||||||||||||  |   ||||||| |||| |||| |||||||||||||| ||||||||
Sbjct: 404 gcgcaaggaggacgtcgaaggcgagaaatacctggggatacaaatatttaggttttactt 463

                                                                 
Query: 361 caagtgtactaggtgctcagctgagattaccttcaaaacagaccctcaaaattc 414
           ||||||||| |  || ||||||||||| || |||||||| |||||||| |||||
Sbjct: 464 caagtgtacgaaatgttcagctgagataactttcaaaacggaccctcagaattc 517
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  280 bits (141), Expect = 3e-72
 Identities = 180/193 (93%)
 Strand = Plus / Plus

                                                                            
Query: 121      cggcgcgatgggtgagcggaaggtgctgaacaagtactatccgccggacttcgacccggc 180
                ||||| |||||||||||| |||||||||||||||||||| || ||||||||||||||| |
Sbjct: 22928288 cggcgagatgggtgagcgcaaggtgctgaacaagtactaccctccggacttcgacccgtc 22928347

                                                                            
Query: 181      gaagatcccgcgtcggaagcagcctaagaaccagcagatcaaggtgcgcatgatgcttcc 240
                |||||||||||| |||  |||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 22928348 gaagatcccgcggcggcggcagcccaagaaccagcagatcaaggtgcgcatgatgctccc 22928407

                                                                            
Query: 241      catgagcatccggtgtggcacctgcggcacctacatctacaagggcaccaaattcaactc 300
                |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 22928408 catgagcatccgctgcggcacctgcggcacctacatctacaagggcaccaagttcaactc 22928467

                             
Query: 301      gcgcaaggaggac 313
                |||||||||||||
Sbjct: 22928468 gcgcaaggaggac 22928480



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                            
Query: 328      atacttgggcatacaaatatttagattttacttcaagtgtactaggtgctcagctgagat 387
                |||| |||| |||||||||||||| ||||||||||||||||| |  || |||||||||||
Sbjct: 22929437 atacctggggatacaaatatttaggttttacttcaagtgtacgaaatgttcagctgagat 22929496

                                           
Query: 388      taccttcaaaacagaccctcaaaattc 414
                 || |||||||| |||||||| |||||
Sbjct: 22929497 aactttcaaaacggaccctcagaattc 22929523
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>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0700A11
          Length = 136321

 Score =  280 bits (141), Expect = 3e-72
 Identities = 180/193 (93%)
 Strand = Plus / Plus

                                                                          
Query: 121    cggcgcgatgggtgagcggaaggtgctgaacaagtactatccgccggacttcgacccggc 180
              ||||| |||||||||||| |||||||||||||||||||| || ||||||||||||||| |
Sbjct: 131845 cggcgagatgggtgagcgcaaggtgctgaacaagtactaccctccggacttcgacccgtc 131904

                                                                          
Query: 181    gaagatcccgcgtcggaagcagcctaagaaccagcagatcaaggtgcgcatgatgcttcc 240
              |||||||||||| |||  |||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 131905 gaagatcccgcggcggcggcagcccaagaaccagcagatcaaggtgcgcatgatgctccc 131964

                                                                          
Query: 241    catgagcatccggtgtggcacctgcggcacctacatctacaagggcaccaaattcaactc 300
              |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 131965 catgagcatccgctgcggcacctgcggcacctacatctacaagggcaccaagttcaactc 132024

                           
Query: 301    gcgcaaggaggac 313
              |||||||||||||
Sbjct: 132025 gcgcaaggaggac 132037



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                          
Query: 328    atacttgggcatacaaatatttagattttacttcaagtgtactaggtgctcagctgagat 387
              |||| |||| |||||||||||||| ||||||||||||||||| |  || |||||||||||
Sbjct: 132994 atacctggggatacaaatatttaggttttacttcaagtgtacgaaatgttcagctgagat 133053

                                         
Query: 388    taccttcaaaacagaccctcaaaattc 414
               || |||||||| |||||||| |||||
Sbjct: 133054 aactttcaaaacggaccctcagaattc 133080
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>ref|NM_101573.2| Arabidopsis thaliana unknown protein AT1G17130 mRNA, complete cds
          Length = 1615

 Score =  117 bits (59), Expect = 3e-23
 Identities = 194/239 (81%)
 Strand = Plus / Plus

                                                                       
Query: 128 atgggtgagcggaaggtgctgaacaagtactatccgccggacttcgacccggcgaagatc 187
           ||||| || ||||||||||| |||||||| ||||||||||||||||| || |||||| | 
Sbjct: 117 atgggagaacggaaggtgctaaacaagtattatccgccggacttcgatcctgcgaagctt 176

                                                                       
Query: 188 ccgcgtcggaagcagcctaagaaccagcagatcaaggtgcgcatgatgcttcccatgagc 247
           |  || |    || ||| |||||||||||||||||||| || ||||||||||| ||||| 
Sbjct: 177 caacggctccggcggccgaagaaccagcagatcaaggttcgtatgatgcttccaatgagt 236

                                                                       
Query: 248 atccggtgtggcacctgcggcacctacatctacaagggcaccaaattcaactcgcgcaag 307
            |||| || || |||||||| | ||| ||||||||||| ||||| ||||| || || || 
Sbjct: 237 gtccgatgcggtacctgcggaaactatatctacaagggaaccaagttcaattcccgtaaa 296

                                                                      
Query: 308 gaggactgcatcggcgagacatacttgggcatacaaatatttagattttacttcaagtg 366
           || |||  ||| |||||||| ||  | || || |||||||||||||| |||||||||||
Sbjct: 297 gaagacgtcattggcgagacgtatctcgggattcaaatatttagattctacttcaagtg 355
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>gb|BT012261.1| Arabidopsis thaliana At1g17130 gene, complete cds
          Length = 996

 Score =  117 bits (59), Expect = 3e-23
 Identities = 194/239 (81%)
 Strand = Plus / Plus

                                                                       
Query: 128 atgggtgagcggaaggtgctgaacaagtactatccgccggacttcgacccggcgaagatc 187
           ||||| || ||||||||||| |||||||| ||||||||||||||||| || |||||| | 
Sbjct: 1   atgggagaacggaaggtgctaaacaagtattatccgccggacttcgatcctgcgaagctt 60

                                                                       
Query: 188 ccgcgtcggaagcagcctaagaaccagcagatcaaggtgcgcatgatgcttcccatgagc 247
           |  || |    || ||| |||||||||||||||||||| || ||||||||||| ||||| 
Sbjct: 61  caacggctccggcggccgaagaaccagcagatcaaggttcgtatgatgcttccaatgagt 120

                                                                       
Query: 248 atccggtgtggcacctgcggcacctacatctacaagggcaccaaattcaactcgcgcaag 307
            |||| || || |||||||| | ||| ||||||||||| ||||| ||||| || || || 
Sbjct: 121 gtccgatgcggtacctgcggaaactatatctacaagggaaccaagttcaattcccgtaaa 180

                                                                      
Query: 308 gaggactgcatcggcgagacatacttgggcatacaaatatttagattttacttcaagtg 366
           || |||  ||| |||||||| ||  | || || |||||||||||||| |||||||||||
Sbjct: 181 gaagacgtcattggcgagacgtatctcgggattcaaatatttagattctacttcaagtg 239
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>gb|BT011615.1| Arabidopsis thaliana At1g17130 mRNA, complete cds
          Length = 1308

 Score =  117 bits (59), Expect = 3e-23
 Identities = 194/239 (81%)
 Strand = Plus / Plus

                                                                       
Query: 128 atgggtgagcggaaggtgctgaacaagtactatccgccggacttcgacccggcgaagatc 187
           ||||| || ||||||||||| |||||||| ||||||||||||||||| || |||||| | 
Sbjct: 88  atgggagaacggaaggtgctaaacaagtattatccgccggacttcgatcctgcgaagctt 147

                                                                       
Query: 188 ccgcgtcggaagcagcctaagaaccagcagatcaaggtgcgcatgatgcttcccatgagc 247
           |  || |    || ||| |||||||||||||||||||| || ||||||||||| ||||| 
Sbjct: 148 caacggctccggcggccgaagaaccagcagatcaaggttcgtatgatgcttccaatgagt 207

                                                                       
Query: 248 atccggtgtggcacctgcggcacctacatctacaagggcaccaaattcaactcgcgcaag 307
            |||| || || |||||||| | ||| ||||||||||| ||||| ||||| || || || 
Sbjct: 208 gtccgatgcggtacctgcggaaactatatctacaagggaaccaagttcaattcccgtaaa 267

                                                                      
Query: 308 gaggactgcatcggcgagacatacttgggcatacaaatatttagattttacttcaagtg 366
           || |||  ||| |||||||| ||  | || || |||||||||||||| |||||||||||
Sbjct: 268 gaagacgtcattggcgagacgtatctcgggattcaaatatttagattctacttcaagtg 326
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>gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, complete
             sequence
          Length = 114935

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 140/170 (82%)
 Strand = Plus / Minus

                                                                         
Query: 128   atgggtgagcggaaggtgctgaacaagtactatccgccggacttcgacccggcgaagatc 187
             ||||| || ||||||||||| |||||||| ||||||||||||||||| || |||||| | 
Sbjct: 69173 atgggagaacggaaggtgctaaacaagtattatccgccggacttcgatcctgcgaagctt 69114

                                                                         
Query: 188   ccgcgtcggaagcagcctaagaaccagcagatcaaggtgcgcatgatgcttcccatgagc 247
             |  || |    || ||| |||||||||||||||||||| || ||||||||||| ||||| 
Sbjct: 69113 caacggctccggcggccgaagaaccagcagatcaaggttcgtatgatgcttccaatgagt 69054

                                                               
Query: 248   atccggtgtggcacctgcggcacctacatctacaagggcaccaaattcaa 297
              |||| || || |||||||| | ||| ||||||||||| ||||| |||||
Sbjct: 69053 gtccgatgcggtacctgcggaaactatatctacaagggaaccaagttcaa 69004



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 341   caaatatttagattttacttcaagtg 366
             |||||||||||||| |||||||||||
Sbjct: 68536 caaatatttagattctacttcaagtg 68511
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>ref|XM_423475.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ10374
           (LOC425754), mRNA
          Length = 511

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 137 cggaaggtgctgaacaagtactatccgccggacttcgacccggcgaagatcccg 190
           ||||| ||| ||||||| || || |||||||||||||| || ||||||||||||
Sbjct: 84  cggaaagtgttgaacaaatattacccgccggacttcgatcccgcgaagatcccg 137
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>ref|XM_849652.1| PREDICTED: Canis familiaris similar to CG8435-PA (LOC611929), mRNA
          Length = 1024

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 272 tacatctacaagggcaccaaattcaactcgcgcaaggag 310
           ||||||||||||||||  || |||||| |||||||||||
Sbjct: 194 tacatctacaagggcaagaagttcaacgcgcgcaaggag 232
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>ref|XM_776932.1| PREDICTED: Strongylocentrotus purpuratus similar to CG15084-PA
           (LOC576648), mRNA
          Length = 1815

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 154 gtactatccgccggacttcgacccggc 180
           ||||||||||||||||||||| |||||
Sbjct: 45  gtactatccgccggacttcgatccggc 71
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>ref|XM_523380.1| PREDICTED: Pan troglodytes LOC467988 (LOC467988), mRNA
          Length = 2844

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 268  cacctacatctacaagggcaccaaat 293
            ||||||| ||||||||||||||||||
Sbjct: 2409 cacctacttctacaagggcaccaaat 2434
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>ref|NM_002428.2| Homo sapiens matrix metallopeptidase 15 (membrane-inserted) (MMP15),
            mRNA
          Length = 4456

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 268  cacctacatctacaagggcaccaaat 293
            ||||||| ||||||||||||||||||
Sbjct: 2548 cacctacttctacaagggcaccaaat 2573
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>gb|BC055428.1| Homo sapiens matrix metallopeptidase 15 (membrane-inserted), mRNA
            (cDNA clone MGC:51077 IMAGE:4811572), complete cds
          Length = 4263

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 268  cacctacatctacaagggcaccaaat 293
            ||||||| ||||||||||||||||||
Sbjct: 2361 cacctacttctacaagggcaccaaat 2386
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>gb|BC036495.1| Homo sapiens matrix metallopeptidase 15 (membrane-inserted), mRNA
            (cDNA clone MGC:43196 IMAGE:5263145), complete cds
          Length = 4268

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 268  cacctacatctacaagggcaccaaat 293
            ||||||| ||||||||||||||||||
Sbjct: 2366 cacctacttctacaagggcaccaaat 2391
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>gb|BC006412.1| Homo sapiens matrix metallopeptidase 15 (membrane-inserted), mRNA
            (cDNA clone IMAGE:3607064)
          Length = 3458

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 268  cacctacatctacaagggcaccaaat 293
            ||||||| ||||||||||||||||||
Sbjct: 1480 cacctacttctacaagggcaccaaat 1505
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>emb|AL356119.31| Human DNA sequence from clone RP5-856H7 on chromosome 6 Contains the 5'
             part of the alternatively spliced gene for the human
             orthologs of mouse QKI-7 and QKI-7B (KH Domain RNA Binding
             proteins) and zebrafish ZKQ-1 (Quaking protein homolog)
             and a CpG island, complete sequence
          Length = 75152

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 64    cgcccctccctcctctccggcg 85
             ||||||||||||||||||||||
Sbjct: 24199 cgcccctccctcctctccggcg 24220
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>emb|Z48482.1|HSMMPM2 H.sapiens mRNA for membrane-type matrix metalloproteinase 2
          Length = 3530

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 268  cacctacatctacaagggcaccaaat 293
            ||||||| ||||||||||||||||||
Sbjct: 1623 cacctacttctacaagggcaccaaat 1648
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>ref|NM_206855.1| Homo sapiens quaking homolog, KH domain RNA binding (mouse) (QKI),
           transcript variant 4, mRNA
          Length = 7919

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 64  cgcccctccctcctctccggcg 85
           ||||||||||||||||||||||
Sbjct: 485 cgcccctccctcctctccggcg 506
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>ref|NM_206854.1| Homo sapiens quaking homolog, KH domain RNA binding (mouse) (QKI),
           transcript variant 3, mRNA
          Length = 6972

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 64  cgcccctccctcctctccggcg 85
           ||||||||||||||||||||||
Sbjct: 485 cgcccctccctcctctccggcg 506
to top
>ref|NM_006775.1| Homo sapiens quaking homolog, KH domain RNA binding (mouse) (QKI),
           transcript variant 1, mRNA
          Length = 4731

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 64  cgcccctccctcctctccggcg 85
           ||||||||||||||||||||||
Sbjct: 485 cgcccctccctcctctccggcg 506
to top
>ref|NM_206853.1| Homo sapiens quaking homolog, KH domain RNA binding (mouse) (QKI),
           transcript variant 2, mRNA
          Length = 5693

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 64  cgcccctccctcctctccggcg 85
           ||||||||||||||||||||||
Sbjct: 485 cgcccctccctcctctccggcg 506
to top
>gb|BT007979.1| Synthetic construct Homo sapiens matrix metalloproteinase 15
            (membrane-inserted) mRNA, partial cds
          Length = 1695

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 268  cacctacatctacaagggcaccaaat 293
            ||||||| ||||||||||||||||||
Sbjct: 1260 cacctacttctacaagggcaccaaat 1285
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>gb|BT006715.1| Homo sapiens matrix metalloproteinase 15 (membrane-inserted) mRNA,
            complete cds
          Length = 1695

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 268  cacctacatctacaagggcaccaaat 293
            ||||||| ||||||||||||||||||
Sbjct: 1260 cacctacttctacaagggcaccaaat 1285
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>gb|AC012182.7| Homo sapiens chromosome 16 clone RP11-332G1, complete sequence
          Length = 188926

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 268    cacctacatctacaagggcaccaaat 293
              ||||||| ||||||||||||||||||
Sbjct: 120220 cacctacttctacaagggcaccaaat 120245
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>gb|AY118949.1| Drosophila melanogaster LD32459 full insert cDNA
          Length = 1151

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 272 tacatctacaagggcaccaaattcaactcgcgcaaggaggac 313
           ||||| ||||||||||  ||||||||| | ||||||||||||
Sbjct: 207 tacatatacaagggcaagaaattcaacgctcgcaaggaggac 248



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 149 aacaagtactatccgccggacttcgacccggcgaagatcccgcg 192
           ||||| |||||||| ||||||||||| ||  ||||||| |||||
Sbjct: 84  aacaaatactatcccccggacttcgatccatcgaagattccgcg 127
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>emb|CR626096.1| full-length cDNA clone CS0DI023YA16 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1886

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 64  cgcccctccctcctctccggcg 85
           ||||||||||||||||||||||
Sbjct: 349 cgcccctccctcctctccggcg 370
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>emb|CR596713.1| full-length cDNA clone CS0DI028YF13 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1850

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 268 cacctacatctacaagggcaccaaat 293
           ||||||| ||||||||||||||||||
Sbjct: 52  cacctacttctacaagggcaccaaat 77
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>ref|NM_137248.2| Drosophila melanogaster CG8435-RA (CG8435), mRNA
          Length = 1136

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 272 tacatctacaagggcaccaaattcaactcgcgcaaggaggac 313
           ||||| ||||||||||  ||||||||| | ||||||||||||
Sbjct: 211 tacatatacaagggcaagaaattcaacgctcgcaaggaggac 252



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 149 aacaagtactatccgccggacttcgacccggcgaagatcccgcg 192
           ||||| |||||||| ||||||||||| ||  ||||||| |||||
Sbjct: 88  aacaaatactatcccccggacttcgatccatcgaagattccgcg 131
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>gb|AC104612.1| Drosophila melanogaster, chromosome 2R, region 52F-53A, BAC clone
             BACR29I14, complete sequence
          Length = 169877

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 272   tacatctacaagggcaccaaattcaactcgcgcaaggaggac 313
             ||||| ||||||||||  ||||||||| | ||||||||||||
Sbjct: 93425 tacatatacaagggcaagaaattcaacgctcgcaaggaggac 93466
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>gb|AC007572.5|AC007572 Drosophila melanogaster, chromosome 2R, region 53A-53B, BAC clone
             BACR21B04, complete sequence
          Length = 156823

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 272   tacatctacaagggcaccaaattcaactcgcgcaaggaggac 313
             ||||| ||||||||||  ||||||||| | ||||||||||||
Sbjct: 25343 tacatatacaagggcaagaaattcaacgctcgcaaggaggac 25302
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>dbj|AB067808.2| Homo sapiens gene for RNA binding protein HQK, complete cds
          Length = 12194

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 64  cgcccctccctcctctccggcg 85
           ||||||||||||||||||||||
Sbjct: 485 cgcccctccctcctctccggcg 506
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>gb|AF272349.1| Homo sapiens quaking protein 3 (QK3) mRNA, partial cds
          Length = 2489

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 64  cgcccctccctcctctccggcg 85
           ||||||||||||||||||||||
Sbjct: 367 cgcccctccctcctctccggcg 388
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>gb|AE003808.4| Drosophila melanogaster chromosome 2R, section 42 of 73 of the complete
              sequence
          Length = 260367

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                        
Query: 272    tacatctacaagggcaccaaattcaactcgcgcaaggaggac 313
              ||||| ||||||||||  ||||||||| | ||||||||||||
Sbjct: 227847 tacatatacaagggcaagaaattcaacgctcgcaaggaggac 227806
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>gb|AC004320.1|AC004320 Drosophila melanogaster (P1 DS07424 (D214)) DNA sequence, complete
             sequence
          Length = 63433

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 272   tacatctacaagggcaccaaattcaactcgcgcaaggaggac 313
             ||||| ||||||||||  ||||||||| | ||||||||||||
Sbjct: 23093 tacatatacaagggcaagaaattcaacgctcgcaaggaggac 23134
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>dbj|D85510.1| Homo sapiens mRNA for SMCP-2, partial cds
          Length = 2925

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 268  cacctacatctacaagggcaccaaat 293
            ||||||| ||||||||||||||||||
Sbjct: 1090 cacctacttctacaagggcaccaaat 1115
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>dbj|D86331.1| Human MT2-MMP gene for matrix metalloprotein, complete cds
          Length = 1893

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 268  cacctacatctacaagggcaccaaat 293
            ||||||| ||||||||||||||||||
Sbjct: 1298 cacctacttctacaagggcaccaaat 1323
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>dbj|AB067801.1| Homo sapiens mRNA for RNA binding protein HQK-7B, complete cds
          Length = 7912

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 64  cgcccctccctcctctccggcg 85
           ||||||||||||||||||||||
Sbjct: 486 cgcccctccctcctctccggcg 507
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>dbj|AB067800.1| Homo sapiens mRNA for RNA binding protein HQK-7, complete cds
          Length = 6965

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 64  cgcccctccctcctctccggcg 85
           ||||||||||||||||||||||
Sbjct: 486 cgcccctccctcctctccggcg 507
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>dbj|AB067799.1| Homo sapiens mRNA for RNA binding protein HQK-6, complete cds
          Length = 5686

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 64  cgcccctccctcctctccggcg 85
           ||||||||||||||||||||||
Sbjct: 486 cgcccctccctcctctccggcg 507
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>dbj|AB067798.1| Homo sapiens mRNA for RNA binding protein HQK-5, complete cds
          Length = 4664

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 64  cgcccctccctcctctccggcg 85
           ||||||||||||||||||||||
Sbjct: 486 cgcccctccctcctctccggcg 507
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>gb|AC079926.7| Homo sapiens BAC clone RP11-620E11 from 4, complete sequence
          Length = 186187

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 341    caaatatttagattttacttc 361
              |||||||||||||||||||||
Sbjct: 106994 caaatatttagattttacttc 107014
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 115     aggcggcggcgcgatgggtgagcgg 139
               |||||||| ||||||||||||||||
Sbjct: 8690979 aggcggcgacgcgatgggtgagcgg 8691003
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>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0037N01
          Length = 174085

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 115    aggcggcggcgcgatgggtgagcgg 139
              |||||||| ||||||||||||||||
Sbjct: 105961 aggcggcgacgcgatgggtgagcgg 105985
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>emb|BX001038.6| Zebrafish DNA sequence from clone CH211-12M10 in linkage group 17,
              complete sequence
          Length = 180659

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 337    catacaaatatttagatttta 357
              |||||||||||||||||||||
Sbjct: 142837 catacaaatatttagatttta 142817
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>ref|NM_208323.1| Eremothecium gossypii ABR024Cp (ABR024C), mRNA
          Length = 843

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 149 aacaagtactatccgccggacttcgaccc 177
           ||||||||||| |||||||||| ||||||
Sbjct: 22  aacaagtactacccgccggactacgaccc 50
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>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II,
              complete sequence
          Length = 867699

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 149    aacaagtactatccgccggacttcgaccc 177
              ||||||||||| |||||||||| ||||||
Sbjct: 440098 aacaagtactacccgccggactacgaccc 440070
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>ref|NM_008609.3| Mus musculus matrix metallopeptidase 15 (Mmp15), mRNA
          Length = 4346

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 268  cacctacatctacaagggcaccaa 291
            ||||||| ||||||||||||||||
Sbjct: 2095 cacctacttctacaagggcaccaa 2118
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>gb|BC057952.1| Mus musculus matrix metallopeptidase 15, mRNA (cDNA clone MGC:68241
            IMAGE:5342023), complete cds
          Length = 3909

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 268  cacctacatctacaagggcaccaa 291
            ||||||| ||||||||||||||||
Sbjct: 1665 cacctacttctacaagggcaccaa 1688
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>gb|BC047278.1| Mus musculus matrix metallopeptidase 15, mRNA (cDNA clone MGC:54739
            IMAGE:6390113), complete cds
          Length = 4346

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 268  cacctacatctacaagggcaccaa 291
            ||||||| ||||||||||||||||
Sbjct: 2095 cacctacttctacaagggcaccaa 2118
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>gb|AC147546.1| Rattus norvegicus chromosome 1 clone RP32-323A19 map q33, complete
             sequence
          Length = 118946

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 330   acttgggcatacaaatatttagatttta 357
             ||||||||| ||||||||||| ||||||
Sbjct: 35505 acttgggcaaacaaatatttaaatttta 35478
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>emb|AL713999.28| Human DNA sequence from clone RP11-263K19 on chromosome 1 Contains the 3'
              end of the TRIM46 gene for tripartite motif-containing 46,
              the MUC1 gene for mucin 1 (transmembrane), the THBS3 gene
              for thrombospondin 3, two novel genes, the MTX1 gene for
              metaxin 1, the gene for a novel protein similar to
              glucosidase (beta; acid (includes glucosylceramidase))
              (GBA), a metaxin 1 (MTX1) pseudogene, the GBA gene for
              glucosidase (beta; acid (includes glucosylceramidase)), the
              C1orf2 gene for chromosome 1 open reading frame 2, the
              SCAMP3 gene for secretory carrier membrane protein 3, the
              CLK2 gene for CDC-like kinase 2, the HCN3 gene for
              hyperpolarization activated cyclic nucleotide-gated
              potassium channel 3, the PKLR gene for pyruvate kinase
              (liver and RBC) and three CpG islands, complete sequence
          Length = 133525

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     gagacgcccctccctcctct 79
              ||||||||||||||||||||
Sbjct: 118853 gagacgcccctccctcctct 118834
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>emb|AL591378.2| Human DNA sequence from clone RP11-64P15 on chromosome X Contains the
             5' end of a novel gene and a CpG island, complete sequence
          Length = 166016

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   catacaaatatttagatttt 356
             ||||||||||||||||||||
Sbjct: 64033 catacaaatatttagatttt 64014
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>gb|AY316591.1| Homo sapiens pyruvate kinase, liver and RBC (PKLR) gene, complete cds
          Length = 13322

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    gagacgcccctccctcctct 79
             ||||||||||||||||||||
Sbjct: 11372 gagacgcccctccctcctct 11391
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>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2
          Length = 178073

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   cacctgcggcacctacatct 278
             ||||||||||||||||||||
Sbjct: 87994 cacctgcggcacctacatct 88013
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>emb|CR450696.6| Zebrafish DNA sequence from clone CH211-147K9 in linkage group 25,
              complete sequence
          Length = 187055

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    agatcaaggtgcgcatgatg 235
              ||||||||||||||||||||
Sbjct: 118811 agatcaaggtgcgcatgatg 118830
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>gb|AC074276.18| Homo sapiens 3 BAC RP11-113A11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191241

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 345    tatttagattttacttcaagtgta 368
              ||||||| ||||||||||||||||
Sbjct: 145947 tatttagtttttacttcaagtgta 145924
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>ref|XM_238034.3| PREDICTED: Rattus norvegicus matrix metalloproteinase 15 (predicted)
            (Mmp15_predicted), mRNA
          Length = 4045

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 268  cacctacatctacaagggcaccaa 291
            ||||||| ||||||||||||||||
Sbjct: 3630 cacctacttctacaagggcaccaa 3653
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>emb|BX004818.16| Zebrafish DNA sequence from clone DKEY-64O12, complete sequence
          Length = 215899

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   acaaatatttagattttact 359
             ||||||||||||||||||||
Sbjct: 39500 acaaatatttagattttact 39481
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>gb|U47654.1|HSU47654 Homo sapiens pyruvate kinase PK-R isoenzyme gene, partial cds; and
            pyruvate kinase PK-L isoenzyme gene, complete cds
          Length = 8409

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   gagacgcccctccctcctct 79
            ||||||||||||||||||||
Sbjct: 7677 gagacgcccctccctcctct 7696
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>gb|AC165414.9| Mus musculus chromosome 8, clone RP23-424A21, complete sequence
          Length = 192707

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 268   cacctacatctacaagggcaccaa 291
             ||||||| ||||||||||||||||
Sbjct: 66643 cacctacttctacaagggcaccaa 66666
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>ref|NM_181871.2| Homo sapiens pyruvate kinase, liver and RBC (PKLR), nuclear gene
            encoding mitochondrial protein, transcript variant 2,
            mRNA
          Length = 2433

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   gagacgcccctccctcctct 79
            ||||||||||||||||||||
Sbjct: 1699 gagacgcccctccctcctct 1718
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>ref|NM_000298.4| Homo sapiens pyruvate kinase, liver and RBC (PKLR), nuclear gene
            encoding mitochondrial protein, transcript variant 1,
            mRNA
          Length = 2483

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   gagacgcccctccctcctct 79
            ||||||||||||||||||||
Sbjct: 1749 gagacgcccctccctcctct 1768
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>dbj|D86332.1| Mus musculus mRNA for membrane type-2 matrix metalloproteinase,
            complete cds
          Length = 3339

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 268  cacctacatctacaagggcaccaa 291
            ||||||| ||||||||||||||||
Sbjct: 1591 cacctacttctacaagggcaccaa 1614


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,234,840
Number of Sequences: 3902068
Number of extensions: 3234840
Number of successful extensions: 61594
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61425
Number of HSP's gapped (non-prelim): 164
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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