ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E13B_WHEAT (P52409) Glucan endo-1,3-beta-glucosidase precursor (... 50 1e-06
2E133_ARATH (Q9ZU91) Putative glucan endo-1,3-beta-glucosidase 3 ... 47 9e-06
3E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 ... 46 2e-05
4E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 ... 44 8e-05
5EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 ... 35 0.048
6NPC1_HUMAN (O15118) Niemann-Pick C1 protein precursor 30 2.0
7ATS12_HUMAN (P58397) ADAMTS-12 precursor (EC 3.4.24.-) (A disint... 29 2.6
8VANG2_MOUSE (Q91ZD4) Vang-like protein 2 (Van Gogh-like protein ... 29 2.6
9VANG2_HUMAN (Q9ULK5) Vang-like protein 2 (Van Gogh-like protein ... 29 3.4
10HXD1_HUMAN (Q9GZZ0) Homeobox protein Hox-D1 29 3.4
11DLDH_TRYBB (Q04933) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (Di... 28 4.5
12LRP2_RAT (P98158) Low-density lipoprotein receptor-related prote... 28 5.8
13KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-as... 28 7.6
14GLMM_THET2 (Q72JS7) Phosphoglucosamine mutase (EC 5.4.2.10) 28 7.6
15MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains... 28 7.6
16BLT4_HORVU (P25307) BLT4 protein precursor 27 9.9
17GLMM_THET8 (Q5SMH2) Phosphoglucosamine mutase (EC 5.4.2.10) 27 9.9

>E13B_WHEAT (P52409) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
          Length = 461

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 25/52 (48%), Positives = 29/52 (55%)
 Frame = +2

Query: 125 YCVCKSDANPVAMQKAIDYACGKGADCTQITSNGPCFQPISVVAHCSYACTA 280
           +CV K  AN   +Q  I+YACG   DC  I S G CF P S+ AH SY   A
Sbjct: 377 WCVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASYVMNA 427



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>E133_ARATH (Q9ZU91) Putative glucan endo-1,3-beta-glucosidase 3 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 501

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +2

Query: 125 YCVCKSDANPVAMQKAIDYACGKG-ADCTQITSNGPCFQPISVVAHCSYACTA 280
           +C+ K   +   +Q A+D+ACG G  DC+ +     C++P  VVAH +YA  A
Sbjct: 360 FCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNA 412



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>E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 505

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +2

Query: 119 AMYCVCKSDANPVAMQKAIDYACGKG-ADCTQITSNGPCFQPISVVAHCSYA 271
           +M+CV K+DA+   +   +++ACG+G A+C  I    PC+ P  V +H S+A
Sbjct: 360 SMFCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFA 411



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>E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 402

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 125 YCVCKSDANPVAMQKAIDYACGKG-ADCTQITSNGPCFQPISVVAHCSYA 271
           YC+     +   +Q A+D+ACG G ++C++I     C+QP +V  H S+A
Sbjct: 272 YCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFA 321



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>EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Anther-specific protein A6)
          Length = 478

 Score = 35.0 bits (79), Expect = 0.048
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 122 MYCVCKSDANPVAMQKAIDYACGKG-ADCTQITSNGPCFQPISVVAHCSYA 271
           ++CV    AN   +++ +  AC +    C  +     C++P+S+  H SYA
Sbjct: 388 VWCVPVEGANETELEETLRMACAQSNTTCAALAPGRECYEPVSIYWHASYA 438



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>NPC1_HUMAN (O15118) Niemann-Pick C1 protein precursor|
          Length = 1278

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 113 SDAMYCVCKSDANPVAMQKAIDYACGKGADCTQITS 220
           ++AMY  C+    P +  KA+   CGK AD    T+
Sbjct: 153 ANAMYNACRDVEAPSSNDKALGLLCGKDADACNATN 188



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>ATS12_HUMAN (P58397) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 12) (ADAM-TS
            12) (ADAM-TS12)
          Length = 1593

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 17/78 (21%)
 Frame = +2

Query: 116  DAMYCVCKSDANPVAMQKAIDYACGKGAD------------CTQITSNGPCFQPISVVAH 259
            D   C+C     P   +K    AC K AD            C  + +   C  P +V A 
Sbjct: 1507 DQDQCLCDHKPRPPEFKKCNQQACKKSADLLCTKDKLSASFCQTLKAMKKCSVP-TVRAE 1565

Query: 260  CSYAC-----TATTRERR 298
            C ++C     T T R+RR
Sbjct: 1566 CCFSCPQTHITHTQRQRR 1583



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>VANG2_MOUSE (Q91ZD4) Vang-like protein 2 (Van Gogh-like protein 2)|
          (Loop-tail-associated protein) (Loop-tail protein 1)
          Length = 521

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 94 QEHEDQRSRHCSKQRDGAR 38
          ++H D+R RH SK RDG+R
Sbjct: 21 RKHRDRRDRHRSKSRDGSR 39



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>VANG2_HUMAN (Q9ULK5) Vang-like protein 2 (Van Gogh-like protein 2)|
          (Strabismus 1) (Loop-tail protein 1 homolog)
          Length = 521

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 94 QEHEDQRSRHCSKQRDGAR 38
          ++H D+R RH SK RDG R
Sbjct: 21 RKHRDRRDRHRSKSRDGGR 39



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>HXD1_HUMAN (Q9GZZ0) Homeobox protein Hox-D1|
          Length = 328

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 134 CKSDANPVAMQKAIDYACGKGA--DCTQITSNGPCFQPISVVAHCS 265
           C+SDA PVA+Q A     G GA   C  + +  P   P +  A  S
Sbjct: 28  CRSDARPVALQPAFPLGNGDGAFVSCLPLAAARPSPSPPAAPARPS 73



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>DLDH_TRYBB (Q04933) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (Dihydrolipoamide|
           dehydrogenase)
          Length = 479

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
 Frame = +1

Query: 1   LLSALTSAAREELELHPAACCNGGSSGPHALARHVRR-------LRCDVLRVQVGREP 153
           L+ AL     +E+ +      NG ++G  AL   V +       L CD L V VGR P
Sbjct: 230 LVGALKRNGEDEVPMTGIEGVNGTNNGSIALTLEVEQAGGQAETLHCDALLVSVGRRP 287



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>LRP2_RAT (P98158) Low-density lipoprotein receptor-related protein 2|
           precursor (Megalin) (Glycoprotein 330) (gp330)
          Length = 4660

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +2

Query: 134 CKSDANPVAMQKAIDYA--CGKGADCTQITSNGPCFQPISVVAHCSYACTAT 283
           C      +++ K  D    C +G D   +TS   C   +  V +C Y C  T
Sbjct: 272 CPGSGRCISIDKVCDGVPDCPEGDDENNVTSGRTCGMGVCSVLNCEYQCHQT 323



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>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated|
           protein 10.8) (High sulfur keratin-associated protein
           10.8) (Keratin-associated protein 18-8)
           (Keratin-associated protein 18.8)
          Length = 259

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 131 VCKSDANPVAMQKAIDYACGKGADCTQITSNGPCFQPISVVAHCSYA 271
           +C   ++P   Q +   AC   + C Q      C +PI  V  CS A
Sbjct: 137 ICSGASSPCCQQSSCQSACCTFSPCQQACCVPICCKPICCVPVCSGA 183



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>GLMM_THET2 (Q72JS7) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 437

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 70  GSSGPHALARHVRRLRCDVLRVQVGREPGGDAEGHRLRVRQGRRLHPDHL 219
           GS+ P AL+R V  L  D+     G    GD +  +   R+GR  H DH+
Sbjct: 211 GSTHPEALSRFVVELGLDL-----GLAFDGDGDRVQFIDRKGRLFHGDHV 255



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>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor|
            (EGF-like domain-containing protein 3) (Multiple EGF-like
            domain protein 3)
          Length = 1574

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 182  ACGKGADCTQITSNGPCFQPISVVA-HCSYAC 274
            AC KGA C  +T  G CF P      HC  AC
Sbjct: 1137 ACRKGASCHHVT--GACFCPPGWRGPHCEQAC 1166



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>BLT4_HORVU (P25307) BLT4 protein precursor|
          Length = 130

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 194 PCRTRSRWPSASPPG---SRPTCTRSTSHLSRRTWRARA 87
           P RT    P ASPPG   + PT +   S   R T R RA
Sbjct: 81  PARTTPAGPQASPPGAASASPTRSAPVSTALRSTDRTRA 119



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>GLMM_THET8 (Q5SMH2) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 437

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 70  GSSGPHALARHVRRLRCDVLRVQVGREPGGDAEGHRLRVRQGRRLHPDHL 219
           GS+ P AL+R V  L  D+     G    GD +  +   R+GR  H DH+
Sbjct: 211 GSTHPEALSRFVVELGLDL-----GIAFDGDGDRVQFIDRKGRLFHGDHV 255


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,214,410
Number of Sequences: 219361
Number of extensions: 523660
Number of successful extensions: 2028
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2024
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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