>TGA1A_TOBAC (P14232) TGACG-sequence-specific DNA-binding protein TGA-1A (TGA1a)|
           (ASF-1 protein)
          Length = 359

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 169 KESRGSGGGVDQTMRTSRGAMGFGSSYFSLPFGRW 65
           K+    GGGVD +  +  G    G++ F + +G W
Sbjct: 119 KQGMCVGGGVDASQLSYSGTASSGTAVFDMEYGHW 153

>SHC2_HUMAN (P98077) SHC transforming protein 2 (SH2 domain protein C2) (Src|
           homology 2 domain-containing transforming protein C2)
           (Protein Sck)
          Length = 551

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = -1

Query: 238 LRPCQPRGAAHLPTPRVRVCAE*KESRGSGGGVDQTMRTSRGAMGFGSS 92
           L  C+PR AA  P P +  C     SRGS GG        RGA G G +
Sbjct: 49  LGACEPRCAAPCPLPALSRCRG-AGSRGSRGG--------RGAAGSGDA 88

>PHR_THET8 (P61497) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 420

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 18  FVAAYLPPASPVPDSDHLPKGREKYELPK--PMAPL 119
           F   Y   A P+P  + LPKG E+ E+P+  P  PL
Sbjct: 139 FSRLYRGAAPPLPPPEALPKGPEEGEIPREDPGLPL 174

>OMPA_BORAV (Q05146) Outer membrane protein A precursor|
          Length = 194

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 27  AYLPPASPVPDSDHLPKGREKYELPKPMAPLLV 125
           A+  PA+ +P  D +P  ++  E P PMA  +V
Sbjct: 50  AFWTPATGIPGCDGVPVAQQPKEKPAPMAAKVV 82

>EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)|
          Length = 561

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 39  PASPVPDSDHLPKGREKYELPKPMAP 116
           P SP P  DH  + +E Y +P P  P
Sbjct: 84  PGSPYPAPDHSNEDQEVYVVPPPARP 109

>BNR1_YEAST (P40450) BNI1-related protein 1|
          Length = 1375

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 36  PPASPVPDSDHLPKGREKYELPKPMAPLL 122
           PP  P+P+S  + KG   ++L  P AP L
Sbjct: 822 PPPPPLPESLSMNKGPSNHDLVTPPAPPL 850

>K1C13_ONCMY (Q8JFQ6) Keratin, type I cytoskeletal 13 (Cytokeratin-13) (CK-13)|
           (Keratin-13) (K13)
          Length = 492

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 163 SRGSGGGVDQTMRTSRGA-MGFGSSYFS 83
           S G GGG   +MR+  G  MG GSS FS
Sbjct: 13  SGGGGGGGTMSMRSGGGGGMGMGSSRFS 40

>PHR_THET2 (P61496) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 420

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 18  FVAAYLPPASPVPDSDHLPKGREKYELPK--PMAPL 119
           F   +L   +P+P  + LPKG E+ E+P+  P  PL
Sbjct: 139 FARRFLGVEAPLPAPEALPKGPEEGEIPREDPGLPL 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.130    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,940,915
Number of Sequences: 219361
Number of extensions: 407411
Number of successful extensions: 1370
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)